Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p23170 Brassica napus HOM05D002601 ORTHO05D002884 7.2e-101 370.5 184 100.0
BolC8t49951H Brassica oleracea HOM05D002601 ORTHO05D002884 1.0e-91 340.1 215 83.7
A05p00780 Brassica napus HOM05D002601 ORTHO05D002884 2.8e-28 129.4 162 51.2
BraA05t19081Z Brassica rapa HOM05D002601 ORTHO05D002884 2.8e-28 129.4 162 51.2
C04p00940 Brassica napus HOM05D002601 ORTHO05D002884 1.4e-27 127.1 162 50.6
BolC4t21732H Brassica oleracea HOM05D002601 ORTHO05D002884 1.4e-27 127.1 162 50.6
Carub.0004s2976 Capsella rubella HOM05D002601 ORTHO05D002884 2.4e-27 126.3 162 50.0
CARHR142390 Cardamine hirsuta HOM05D002601 ORTHO05D002884 4.1e-27 125.6 161 49.1
Thhalv10001468m.g Eutrema salsugineum HOM05D002601 ORTHO05D002884 9.0e-27 124.4 160 49.4
Sp4g29020 Schrenkiella parvula HOM05D002601 ORTHO05D002884 2.6e-26 122.9 162 49.4
AT2G47020 Arabidopsis thaliana HOM05D002601 ORTHO05D002884 4.5e-26 122.1 162 48.8
AL4G46510 Arabidopsis lyrata HOM05D002601 ORTHO05D002884 5.0e-25 118.6 162 48.1
Aa31LG1G28380 Aethionema arabicum HOM05D002601 ORTHO05D002884 6.5e-25 118.2 162 48.1
MBI19_g32739_MAGBIO Magnolia biondii HOM05D002601 ORTHO05D002884 6.5e-25 118.2 145 49.7
MELO3C011817.2 Cucumis melo HOM05D002601 ORTHO05D002884 8.5e-25 117.9 161 45.3
Atru.chr5.881 Acer truncatum HOM05D002601 ORTHO05D002884 2.5e-24 116.3 160 46.9
Ciclev10020151m.g Citrus clementina HOM05D002601 ORTHO05D002884 4.2e-24 115.5 162 46.3
HanXRQChr06g0167981 Helianthus annuus HOM05D002601 ORTHO05D002884 7.2e-24 114.8 161 46.0
Actinidia31995 Actinidia chinensis HOM05D002601 ORTHO05D002884 9.4e-24 114.4 159 47.2
CsaV3_5G029740 Cucumis sativus L. HOM05D002601 ORTHO05D002884 9.4e-24 114.4 161 44.1
Lsat_1_v5_gn_8_167200 Lactuca sativa HOM05D002601 ORTHO05D002884 9.4e-24 114.4 161 45.3
Oeu038072.1 Olea europaea HOM05D002601 ORTHO05D002884 9.4e-24 114.4 162 45.7
Dinv26832 Davidia involucrata HOM05D002601 ORTHO05D002884 1.6e-23 113.6 159 47.2
Nitab4.5_0000338g0140 Nicotiana tabacum HOM05D002601 ORTHO05D002884 1.6e-23 113.6 160 45.6
MD05G1002600 Malus domestica HOM05D002601 ORTHO05D002884 2.1e-23 113.2 162 45.7
GSVIVG01028263001 Vitis vinifera HOM05D002601 ORTHO05D002884 2.1e-23 113.2 157 46.5
CSS0028996 Camellia sinensis var. sinensis HOM05D002601 ORTHO05D002884 2.7e-23 112.8 162 46.3
CSS0029568 Camellia sinensis var. sinensis HOM05D002601 ORTHO05D002884 2.7e-23 112.8 162 45.7
Haze_05132 Corylus avellana HOM05D002601 ORTHO05D002884 2.7e-23 112.8 160 45.6
ClCG11G013230 Citrullus lanatus HOM05D002601 ORTHO05D002884 3.6e-23 112.5 161 43.5
Lj1A9T42 Lonicera japonica HOM05D002601 ORTHO05D002884 3.6e-23 112.5 160 46.2
Rhsim12G0087500 Rhododendron simsii HOM05D002601 ORTHO05D002884 4.6e-23 112.1 159 46.5
Nitab4.5_0004137g0010 Nicotiana tabacum HOM05D002601 ORTHO05D002884 6.1e-23 111.7 160 44.4
TWI59G0984 Tripterygium wilfordii HOM05D002601 ORTHO05D002884 6.1e-23 111.7 162 45.7
TAR365G0121 Trochodendron aralioides HOM05D002601 ORTHO05D002884 6.1e-23 111.7 159 45.3
Phvul.001G217500 Phaseolus vulgaris HOM05D002601 ORTHO05D002884 7.9e-23 111.3 167 44.3
Potri.014G114000 Populus trichocarpa HOM05D002601 ORTHO05D002884 7.9e-23 111.3 166 45.2
Sabra14G0084100 Salix brachista HOM05D002601 ORTHO05D002884 7.9e-23 111.3 166 45.2
Sed0003280 Sechium edule HOM05D002601 ORTHO05D002884 7.9e-23 111.3 161 42.2
Thecc.01G323900 Theobroma cacao HOM05D002601 ORTHO05D002884 7.9e-23 111.3 162 45.1
VMungo1383G1635 Vigna mungo HOM05D002601 ORTHO05D002884 7.9e-23 111.3 162 45.7
Eucgr.K00577 Eucalyptus grandis HOM05D002601 ORTHO05D002884 1.0e-22 110.9 160 45.6
Lj1g0008552 Lotus japonicus HOM05D002601 ORTHO05D002884 1.0e-22 110.9 169 43.8
Prupe.7G036500 Prunus persica HOM05D002601 ORTHO05D002884 1.0e-22 110.9 160 45.0
RcHm_v2.0_Chr2g0125161 Rosa chinensis HOM05D002601 ORTHO05D002884 1.0e-22 110.9 162 43.8
Cfa004893 Carpinus fangiana HOM05D002601 ORTHO05D002884 1.4e-22 110.5 166 45.2
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.4e-22 110.5 157 45.9
Gohir.A11G103900 Gossypium hirsutum HOM05D002601 ORTHO05D002884 1.4e-22 110.5 159 44.7
Gohir.D11G108700 Gossypium hirsutum HOM05D002601 ORTHO05D002884 1.4e-22 110.5 159 44.0
Peaxi162Scf00116g01410 Petunia axillaris HOM05D002601 ORTHO05D002884 1.4e-22 110.5 160 44.4
vmacro01416 Vaccinium macrocarpon HOM05D002601 ORTHO05D002884 1.4e-22 110.5 159 46.5
arahy.Tifrunner.gnm1.ann1.5MFX44 Arachis hypogaea HOM05D002601 ORTHO05D002884 1.8e-22 110.2 169 42.6
arahy.Tifrunner.gnm1.ann1.ZJVA8M Arachis hypogaea HOM05D002601 ORTHO05D002884 1.8e-22 110.2 169 42.6
Cc10_g11970 Coffea canephora HOM05D002601 ORTHO05D002884 1.8e-22 110.2 159 44.7
Gorai.007G116300 Gossypium raimondii HOM05D002601 ORTHO05D002884 1.8e-22 110.2 159 44.0
Nn3g21920 Nelumbo nucifera HOM05D002601 ORTHO05D002884 1.8e-22 110.2 159 45.9
Sc05g0000100 Simmondsia chinensis HOM05D002601 ORTHO05D002884 1.8e-22 110.2 160 44.4
TPR.G2425 Trifolium pratense HOM05D002601 ORTHO05D002884 1.8e-22 110.2 169 42.6
ATR0796G161 Amborella trichopoda HOM05D002601 ORTHO05D002884 2.3e-22 109.8 159 47.2
Ca_09242_v3 Cicer arietinum L. HOM05D002601 ORTHO05D002884 2.3e-22 109.8 169 43.8
Sopen03g020430 Solanum pennellii HOM05D002601 ORTHO05D002884 2.3e-22 109.8 160 43.8
Aqoxy2G02514 Aquilegia oxysepala HOM05D002601 ORTHO05D002884 3.9e-22 109.0 157 44.6
CANSAT25G2156 Cannabis sativa HOM05D002601 ORTHO05D002884 3.9e-22 109.0 162 43.8
Glyma.03G223500 Glycine max HOM05D002601 ORTHO05D002884 3.9e-22 109.0 162 43.2
Ah.11g045880 Amaranthus hybridus HOM05D002601 ORTHO05D002884 5.1e-22 108.6 160 43.8
Cpa.g.sc41.90 Carica papaya HOM05D002601 ORTHO05D002884 5.1e-22 108.6 159 43.4
Migut.N00922 Erythranthe guttata HOM05D002601 ORTHO05D002884 5.1e-22 108.6 160 42.5
Solyc03g078020.4 Solanum lycopersicum HOM05D002601 ORTHO05D002884 5.1e-22 108.6 160 43.1
Psat3g017240 Pisum sativum HOM05D002601 ORTHO05D002884 6.7e-22 108.2 169 43.2
Cfa004894 Carpinus fangiana HOM05D002601 ORTHO05D002884 8.8e-22 107.8 199 41.2
CAN.G173.3 Capsicum annuum HOM05D002601 ORTHO05D002884 1.1e-21 107.5 160 43.1
Migut.O00616 Erythranthe guttata HOM05D002601 ORTHO05D002884 1.1e-21 107.5 160 41.9
FAN05G1271 Fragaria x ananassa HOM05D002601 ORTHO05D002884 1.1e-21 107.5 162 43.2
Zm00001eb417410 Zea mays HOM05D002601 ORTHO05D002884 1.1e-21 107.5 142 47.2
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 1.5e-21 107.1 159 44.7
PSO170G2438 Papaver somniferum HOM05D002601 ORTHO05D002884 1.5e-21 107.1 159 43.4
PGR142G1756 Punica granatum HOM05D002601 ORTHO05D002884 1.5e-21 107.1 159 42.1
FAN09G3341 Fragaria x ananassa HOM05D002601 ORTHO05D002884 2.5e-21 106.3 162 43.2
Manes.05G010000 Manihot esculenta HOM05D002601 ORTHO05D002884 3.3e-21 105.9 159 45.3
BcaC07g39303 Brassica carinata HOM05D002601 ORTHO05D002884 4.3e-21 105.5 135 52.6
PSO357G0226 Papaver somniferum HOM05D002601 ORTHO05D002884 4.3e-21 105.5 159 42.1
EL10As5g23616 Beta vulgaris HOM05D002601 ORTHO05D002884 5.7e-21 105.1 160 41.9
AUR62011696 Chenopodium quinoa HOM05D002601 ORTHO05D002884 5.7e-21 105.1 160 41.9
COL.COLO4_23144 Corchorus olitorius HOM05D002601 ORTHO05D002884 5.7e-21 105.1 188 41.0
Lalb_Chr18g0046441 Lupinus albus HOM05D002601 ORTHO05D002884 5.7e-21 105.1 169 42.0
QL12p034519 Quercus lobata HOM05D002601 ORTHO05D002884 5.7e-21 105.1 192 40.1
Duzib138G1823 Durio zibethinus HOM05D002601 ORTHO05D002884 7.4e-21 104.8 158 44.3
HPP92_021932 Vanilla planifolia HOM05D002601 ORTHO05D002884 2.8e-20 102.8 159 43.4
unitig_22.g5838 Utricularia gibba HOM05D002601 ORTHO05D002884 1.1e-19 100.9 163 42.3
arahy.Tifrunner.gnm1.ann1.C6NCIG Arachis hypogaea HOM05D002601 ORTHO05D002884 2.6e-18 96.3 130 46.2
Medtr7g110570 Medicago truncatula HOM05D002601 ORTHO05D002884 3.4e-18 95.9 168 41.1
Pp3c21_7210 Physcomitrium patens HOM05D002601 ORTHO05D002884 7.7e-18 94.7 162 39.5
ECA236G2374 Erigeron canadensis HOM05D002601 ORTHO05D002884 1.0e-17 94.4 161 39.1
AUR62024555 Chenopodium quinoa HOM05D002601 ORTHO05D002884 1.3e-17 94.0 185 36.2
AagrBONN_evm.TU.Sc2ySwM_368.2207 Anthoceros agrestis HOM05D002601 ORTHO05D002884 1.4e-16 90.5 159 35.2
MBI19_g48072_MAGBIO Magnolia biondii HOM05D002601 ORTHO05D002884 3.2e-16 89.4 46 95.7
THA.LOC104802120 Tarenaya hassleriana HOM05D002601 ORTHO05D002884 3.2e-16 89.4 46 95.7
CiPaw.07G124400 Carya illinoinensis HOM05D002601 ORTHO05D002884 4.2e-16 89.0 46 95.7
SGA_v2.0_scaffold58G20339 Striga asiatica HOM05D002601 ORTHO05D002884 1.6e-15 87.0 148 38.5
FAN02G1341 Fragaria x ananassa HOM05D002601 ORTHO05D002884 4.7e-15 85.5 46 91.3
HanXRQChr15g0470391 Helianthus annuus HOM05D002601 ORTHO05D002884 1.0e-14 84.3 43 95.3
arahy.Tifrunner.gnm1.ann1.3UK522 Arachis hypogaea HOM05D002601 ORTHO05D002884 3.9e-14 82.4 46 87.0
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 3.9e-14 82.4 46 84.8
Mapoly0052s0112 Marchantia polymorpha HOM05D002601 ORTHO05D002884 5.1e-14 82.0 46 84.8
SMO358G0456 Selaginella moellendorffii HOM05D002601 ORTHO05D002884 3.3e-13 79.3 143 34.3
SalBow2G3536 Salvia bowleyana HOM05D002601 ORTHO05D002884 4.4e-13 79.0 46 80.4
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 1.4e-11 73.9 38 92.1
HanXRQChr03g0072591 Helianthus annuus HOM05D002601 ORTHO05D002884 4.1e-11 72.4 46 82.6
SMO358G0152 Selaginella moellendorffii HOM05D002601 ORTHO05D002884 5.3e-11 72.0 44 70.5
SMO358G0272 Selaginella moellendorffii HOM05D013303 ORTHO05D002884 5.3e-11 72.0 44 70.5
SMO358G0468 Selaginella moellendorffii HOM05D002601 ORTHO05D002884 7.0e-11 71.6 44 68.2
Haze_27346 Corylus avellana HOM05D002601 ORTHO05D002884 2.0e-10 70.1 46 63.0
DCAR_018245 Daucus carota HOM05D002601 ORTHO05D002884 3.5e-10 69.3 134 36.6
Cre06.g289350 Chlamydomonas reinhardtii HOM05D002601 ORTHO05D002884 1.0e-09 67.8 50 62.0
SMO134G0159 Selaginella moellendorffii HOM05D002601 ORTHO05D002884 1.7e-09 67.0 44 65.9
MCO04G181 Micromonas commoda HOM05D002601 ORTHO05D002884 2.9e-09 66.2 44 65.9
arahy.Tifrunner.gnm1.ann1.69M8FP Arachis hypogaea HOM05D002601 ORTHO05D002884 1.1e-08 64.3 35 82.9
arahy.Tifrunner.gnm1.ann1.MD0I2C Arachis hypogaea HOM05D002601 ORTHO05D002884 1.1e-08 64.3 35 82.9
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 5.5e-08 62.0 38 84.2
Potri.002G188200 Populus trichocarpa HOM05D002601 ORTHO05D002884 1.2e-07 60.8 79 49.4
AagrBONN_evm.TU.Sc2ySwM_344.4940 Anthoceros agrestis HOM05D001672 ORTHO05D007349 1.0e-06 57.8 62 46.8
Ciclev10000955m.g Citrus clementina HOM05D001672 ORTHO05D007349 1.4e-06 57.4 48 56.2
arahy.Tifrunner.gnm1.ann1.N70081 Arachis hypogaea HOM05D002601 ORTHO05D002884 1.8e-06 57.0 31 87.1
Prupe.6G313600 Prunus persica HOM05D001672 ORTHO05D007349 2.3e-06 56.6 54 50.0
Aa31LG2G11500 Aethionema arabicum HOM05D001672 ORTHO05D007349 3.0e-06 56.2 54 51.9
AL1G65980 Arabidopsis lyrata HOM05D001672 ORTHO05D007349 3.0e-06 56.2 54 51.9
BcaC02g10734 Brassica carinata HOM05D001672 ORTHO05D007349 3.0e-06 56.2 54 51.9
BcaC06g31771 Brassica carinata HOM05D001672 ORTHO05D007349 3.0e-06 56.2 54 51.9
C04p27150 Brassica napus HOM05D001672 ORTHO05D007349 3.0e-06 56.2 54 51.9
BolC4t24075H Brassica oleracea HOM05D001672 ORTHO05D007349 3.0e-06 56.2 54 51.9
Thhalv10023424m.g Eutrema salsugineum HOM05D001672 ORTHO05D007349 3.0e-06 56.2 54 51.9
MD04G1193600 Malus domestica HOM05D001672 ORTHO05D007349 3.0e-06 56.2 55 56.4
MD12G1206300 Malus domestica HOM05D001672 ORTHO05D007349 3.0e-06 56.2 55 56.4
Sp2g06480 Schrenkiella parvula HOM05D001672 ORTHO05D007349 3.0e-06 56.2 54 51.9
arahy.Tifrunner.gnm1.ann1.Q60T31 Arachis hypogaea HOM05D002601 ORTHO05D002884 4.0e-06 55.8 125 36.8
Carub.0002s0779 Capsella rubella HOM05D001672 ORTHO05D007349 4.0e-06 55.8 54 51.9
CARHR055350 Cardamine hirsuta HOM05D001672 ORTHO05D007349 4.0e-06 55.8 54 50.0
COL.COLO4_04155 Corchorus olitorius HOM05D001672 ORTHO05D007349 4.0e-06 55.8 54 50.0
PSO357G0676 Papaver somniferum HOM05D001672 ORTHO05D007349 4.0e-06 55.8 54 50.0
Hund07142 Selenicereus undatus HOM05D001672 ORTHO05D007349 4.0e-06 55.8 62 46.8
A03p66640 Brassica napus HOM05D001672 ORTHO05D007349 5.2e-06 55.5 54 50.0
BraA03t15722Z Brassica rapa HOM05D001672 ORTHO05D007349 5.2e-06 55.5 54 50.0
CANSAT54G1215 Cannabis sativa HOM05D001672 ORTHO05D007349 5.2e-06 55.5 62 48.4
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 5.2e-06 55.5 54 51.9
FvH4_6g07390 Fragaria vesca HOM05D001672 ORTHO05D007349 5.2e-06 55.5 62 48.4
FAN02G2468 Fragaria x ananassa HOM05D001672 ORTHO05D007349 5.2e-06 55.5 62 48.4
FAN05G1868 Fragaria x ananassa HOM05D001672 ORTHO05D007349 5.2e-06 55.5 62 48.4
FAN09G3274 Fragaria x ananassa HOM05D001672 ORTHO05D007349 5.2e-06 55.5 62 48.4
FAN14G3268 Fragaria x ananassa HOM05D001672 ORTHO05D007349 5.2e-06 55.5 62 48.4
RcHm_v2.0_Chr3g0456991 Rosa chinensis HOM05D001672 ORTHO05D007349 5.2e-06 55.5 62 48.4
SalBow3G1034 Salvia bowleyana HOM05D001672 ORTHO05D007349 5.2e-06 55.5 60 53.3
SEGI_33328 Sequoiadendron giganteum HOM05D001672 ORTHO05D007349 5.2e-06 55.5 62 46.8
SEGI_37907 Sequoiadendron giganteum HOM05D001672 ORTHO05D007349 5.2e-06 55.5 62 46.8
Ah.06g188840 Amaranthus hybridus HOM05D001672 ORTHO05D007349 6.7e-06 55.1 60 50.0
SalBow2G0993 Salvia bowleyana HOM05D002601 ORTHO05D002884 6.7e-06 55.1 32 78.1
Atru.BG.131.p Acer truncatum HOM05D001672 ORTHO05D007349 8.8e-06 54.7 54 50.0
AT1G56350 Arabidopsis thaliana HOM05D001672 ORTHO05D007349 8.8e-06 54.7 54 48.1
Lalb_Chr18g0046081 Lupinus albus HOM05D001672 ORTHO05D007349 8.8e-06 54.7 54 51.9
PSO170G2861 Papaver somniferum HOM05D001672 ORTHO05D007349 8.8e-06 54.7 37 62.2


User provided reference genes

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