Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 3.3e-153 545.0 285 100.0
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 3.3e-153 545.0 285 100.0
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 3.3e-153 545.0 285 100.0
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.7e-149 532.7 285 97.5
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 2.2e-149 532.3 285 97.5
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 8.8e-146 520.4 285 95.1
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 3.3e-145 518.5 285 94.0
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 2.0e-142 509.2 285 90.9
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 2.0e-142 509.2 285 92.3
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 2.0e-142 509.2 285 92.3
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 2.0e-142 509.2 285 92.3
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 8.5e-141 503.8 285 89.8
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 3.2e-140 501.9 285 91.2
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 3.6e-139 498.4 285 90.5
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.1e-137 493.4 285 88.8
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.4e-135 486.5 284 89.8
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 3.5e-134 481.9 285 86.3
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.7e-133 479.6 277 87.7
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 5.4e-119 431.4 286 78.0
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 6.8e-106 387.9 285 71.9
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.3e-104 383.6 251 80.5
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 2.4e-103 379.4 285 70.2
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 4.1e-103 378.6 282 70.2
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.0e-103 377.9 285 71.2
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 2.7e-102 375.9 285 70.5
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 6.0e-102 374.8 285 69.8
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 6.0e-102 374.8 285 70.5
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.0e-101 374.0 285 70.2
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 2.3e-101 372.9 285 68.8
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 3.9e-101 372.1 281 68.7
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 5.0e-101 371.7 289 67.1
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 1.5e-100 370.2 282 68.8
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.9e-100 369.8 282 68.4
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 5.6e-100 368.2 257 73.9
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 9.5e-100 367.5 282 68.1
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.2e-99 367.1 282 68.4
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 1.6e-99 366.7 285 68.1
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 2.8e-99 365.9 286 67.8
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.1e-98 364.0 286 65.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 8.9e-98 360.9 284 66.2
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 8.9e-98 360.9 282 69.5
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.4e-97 359.0 284 66.2
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 4.4e-97 358.6 286 68.2
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 5.8e-97 358.2 284 65.8
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 7.5e-97 357.8 286 67.1
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.3e-96 357.1 277 67.9
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.3e-96 357.1 276 66.3
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.3e-96 357.1 284 65.1
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.7e-96 356.7 284 66.5
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.2e-96 356.3 286 67.8
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 2.9e-96 355.9 276 68.5
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 2.9e-96 355.9 285 66.7
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 6.4e-96 354.8 287 66.2
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 6.4e-96 354.8 279 67.7
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.4e-95 353.6 285 65.6
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 1.9e-95 353.2 283 65.7
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 2.4e-95 352.8 277 67.1
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 7.0e-95 351.3 285 65.6
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 7.0e-95 351.3 285 65.6
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.7e-94 349.4 287 65.9
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 2.7e-94 349.4 283 65.4
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.5e-94 349.0 271 69.4
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 4.6e-94 348.6 282 65.2
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 6.0e-94 348.2 287 65.5
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 6.0e-94 348.2 285 64.6
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 7.8e-94 347.8 278 66.2
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 7.8e-94 347.8 285 66.7
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.3e-93 347.1 276 65.6
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 1.7e-93 346.7 245 72.7
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.3e-93 346.3 278 65.8
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 2.3e-93 346.3 287 64.8
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 3.0e-93 345.9 275 66.5
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 3.0e-93 345.9 279 65.6
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 3.9e-93 345.5 287 65.5
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 5.0e-93 345.1 271 68.6
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 1.1e-92 344.0 284 64.4
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 1.5e-92 343.6 277 65.3
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 1.5e-92 343.6 284 64.1
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 1.5e-92 343.6 293 62.1
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.9e-92 343.2 277 66.1
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.9e-92 343.2 290 63.8
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.5e-92 342.8 284 65.5
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 3.3e-92 342.4 293 62.5
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.3e-92 342.0 244 71.7
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 4.3e-92 342.0 274 65.0
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 4.3e-92 342.0 286 65.7
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 7.3e-92 341.3 243 72.8
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 7.3e-92 341.3 293 62.5
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 9.5e-92 340.9 296 64.5
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.6e-91 340.1 289 64.4
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 4.7e-91 338.6 227 75.8
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 3.1e-90 335.9 277 63.5
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 8.9e-90 334.3 285 63.9
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 2.0e-89 333.2 321 59.2
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 2.9e-88 329.3 278 64.0
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.9e-88 328.6 282 62.8
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 4.9e-88 328.6 285 63.2
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 4.9e-88 328.6 226 71.7
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.1e-87 327.4 226 71.2
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 4.1e-87 325.5 278 65.1
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 2.1e-86 323.2 216 75.5
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 7.8e-86 321.2 282 61.3
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 7.8e-86 321.2 246 67.9
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.3e-85 320.5 281 61.2
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.1e-84 317.4 277 61.7
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.7e-83 312.0 291 60.8
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 6.2e-83 311.6 253 64.4
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 8.1e-83 311.2 277 61.7
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.8e-82 310.1 285 60.7
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.7e-80 303.5 283 60.8
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 2.2e-80 303.1 228 69.7
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 3.2e-79 299.3 241 63.9
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 3.0e-77 292.7 233 63.1
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 4.3e-76 288.9 283 56.9
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.6e-75 287.0 234 64.1
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 4.7e-75 285.4 234 64.1
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.5e-73 280.4 286 55.9
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 2.1e-70 270.0 215 67.0
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 2.3e-69 266.5 300 47.3
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 1.9e-68 263.5 289 51.2
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 3.3e-68 262.7 237 57.4
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.3e-67 260.8 260 53.1
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.4e-60 235.0 197 54.8
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.2e-59 231.9 197 54.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.1e-59 231.5 197 53.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.8e-58 230.3 197 53.8
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.5e-57 225.7 217 58.1
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 7.4e-52 208.4 271 48.7
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.6e-51 207.2 150 68.0
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.6e-49 198.4 136 72.1
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.2e-48 196.8 137 73.0
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.9e-48 195.7 218 52.8
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.5e-47 193.4 197 48.2
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 3.2e-47 193.0 245 50.2
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.3e-45 186.8 231 48.9
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.1e-38 162.2 178 52.2
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 1.3e-35 154.5 100 79.0
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 1.3e-35 154.5 100 79.0
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-35 153.7 178 47.8
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.5e-31 139.0 182 41.2
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 2.6e-28 130.2 90 73.3
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 5.7e-28 129.0 118 58.5
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.7e-28 128.3 199 36.7
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 2.2e-24 117.1 225 33.8
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 5.0e-24 115.9 76 73.7
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.9e-23 114.0 213 39.0
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 9.4e-23 111.7 217 31.8
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.1e-22 109.0 197 41.1
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.4e-18 97.1 67 68.7
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 5.3e-18 95.9 51 88.2
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.0e-17 94.0 65 66.2
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-17 93.6 65 66.2
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 1.0e-16 91.7 91 50.5
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.9e-16 90.1 60 68.3
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.6e-14 83.2 66 62.1
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 1.8e-13 80.9 90 52.2
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 3.0e-13 80.1 59 71.2
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 3.0e-13 80.1 59 71.2
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 3.4e-12 76.6 61 65.6
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.5e-12 75.5 53 66.0
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 4.5e-09 66.2 44 75.0
BraA03t14352Z Brassica rapa HOM05D004641 ORTHO05D022007 1.7e-08 64.3 46 69.6


User provided reference genes

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