Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 2.5e-134 482.3 272 100.0
C08p22560 Brassica napus HOM05D003373 ORTHO05D004419 2.5e-134 482.3 272 100.0
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 7.3e-134 480.7 272 99.6
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 9.6e-118 427.2 274 91.2
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 1.1e-116 423.7 275 90.5
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 2.4e-108 396.0 248 88.3
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 3.4e-107 392.1 248 87.5
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 2.2e-106 389.4 276 87.0
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 5.1e-103 378.3 248 86.3
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 6.7e-103 377.9 246 85.4
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 1.7e-101 373.2 248 85.5
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 1.0e-98 364.0 272 79.0
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 1.9e-81 306.6 254 70.9
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 3.7e-77 292.4 267 65.2
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 1.2e-75 287.3 268 65.3
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 1.2e-70 270.8 268 61.6
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 1.3e-61 240.7 265 58.1
BcaB03g14104 Brassica carinata HOM05D003373 ORTHO05D004419 8.3e-61 238.0 193 73.6
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 6.6e-50 201.8 276 49.6
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 2.5e-49 199.9 274 50.4
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 3.1e-47 193.0 268 50.7
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 4.4e-46 189.1 282 48.9
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 4.4e-46 189.1 282 49.6
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 1.3e-45 187.6 272 48.5
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 2.9e-45 186.4 271 48.0
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 4.9e-45 185.7 271 48.7
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 5.4e-44 182.2 268 46.6
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 7.1e-44 181.8 273 47.6
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 1.2e-43 181.0 274 47.4
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 2.1e-43 180.3 274 47.4
C02p06900 Brassica napus HOM05D003373 ORTHO05D004419 2.7e-43 179.9 91 100.0
C02p07020 Brassica napus HOM05D003373 ORTHO05D004419 2.7e-43 179.9 91 100.0
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 2.7e-43 179.9 267 47.2
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 4.6e-43 179.1 234 48.7
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 4.6e-43 179.1 273 49.1
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 4.6e-43 179.1 269 48.0
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 4.6e-43 179.1 267 47.9
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 7.8e-43 178.3 263 48.7
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 1.0e-42 177.9 225 49.8
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 1.7e-42 177.2 272 46.7
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 5.1e-42 175.6 264 49.6
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 1.5e-41 174.1 239 48.5
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 1.5e-41 174.1 285 44.2
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 1.5e-41 174.1 245 46.9
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 1.9e-41 173.7 271 45.8
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.5e-41 173.3 260 48.5
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 2.5e-41 173.3 259 46.7
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 3.3e-41 172.9 293 46.1
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 1.2e-40 171.0 288 45.1
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 3.6e-40 169.5 236 47.5
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 3.6e-40 169.5 277 45.8
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 4.7e-40 169.1 243 46.1
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 8.1e-40 168.3 219 49.8
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 1.4e-39 167.5 286 45.8
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 1.8e-39 167.2 285 43.9
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 1.8e-39 167.2 276 46.4
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 2.3e-39 166.8 122 66.4
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 2.3e-39 166.8 216 49.5
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 2.3e-39 166.8 269 44.6
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 3.1e-39 166.4 216 49.5
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 4.0e-39 166.0 269 46.8
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 4.0e-39 166.0 255 47.8
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 5.2e-39 165.6 171 52.0
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 5.2e-39 165.6 269 44.6
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 5.2e-39 165.6 216 49.5
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 6.8e-39 165.2 285 43.9
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 6.8e-39 165.2 269 45.4
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 8.9e-39 164.9 293 43.0
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 1.2e-38 164.5 126 65.9
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.2e-38 164.5 276 45.3
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 1.2e-38 164.5 276 45.3
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 1.5e-38 164.1 238 48.7
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 2.0e-38 163.7 136 61.0
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 2.0e-38 163.7 280 43.9
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 2.0e-38 163.7 280 45.4
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 2.6e-38 163.3 271 43.9
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 3.4e-38 162.9 283 44.2
CSS0033815 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 5.8e-38 162.2 280 42.9
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 5.8e-38 162.2 272 44.5
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 7.6e-38 161.8 255 45.5
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 9.9e-38 161.4 277 44.4
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 1.3e-37 161.0 259 43.6
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 2.9e-37 159.8 279 43.0
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 6.4e-37 158.7 272 43.4
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 6.4e-37 158.7 240 46.7
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 6.4e-37 158.7 274 42.3
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 8.4e-37 158.3 229 44.5
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 8.4e-37 158.3 261 46.0
Glyma.01G122300 Glycine max HOM05D003373 ORTHO05D004419 1.1e-36 157.9 125 66.4
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 1.1e-36 157.9 273 42.5
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 1.4e-36 157.5 339 38.1
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 1.4e-36 157.5 280 41.8
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 1.9e-36 157.1 293 42.0
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 2.4e-36 156.8 261 43.3
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 4.1e-36 156.0 257 44.0
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 4.1e-36 156.0 258 44.6
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 9.2e-36 154.8 274 42.0
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 1.2e-35 154.5 252 44.0
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.2e-35 154.5 272 41.9
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 3.5e-35 152.9 282 43.3
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 4.6e-35 152.5 232 44.8
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 6.0e-35 152.1 281 44.1
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 7.8e-35 151.8 258 43.8
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 1.3e-34 151.0 254 41.3
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 1.3e-34 151.0 260 41.9
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 3.0e-34 149.8 331 38.1
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 5.1e-34 149.1 260 41.2
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 6.6e-34 148.7 273 40.7
Glyma.01G047300 Glycine max HOM05D003373 ORTHO05D004419 1.1e-33 147.9 125 63.2
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 1.1e-33 147.9 246 43.5
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 3.3e-33 146.4 272 43.8
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 3.3e-33 146.4 253 43.5
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 3.3e-33 146.4 146 53.4
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 5.6e-33 145.6 172 49.4
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 7.3e-33 145.2 285 41.1
Lalb_Chr17g0340231 Lupinus albus HOM05D003373 ORTHO05D004419 1.2e-32 144.4 144 55.6
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 4.7e-32 142.5 281 39.9
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 8.1e-32 141.7 125 57.6
Cc00_g35170 Coffea canephora HOM05D003373 ORTHO05D004419 8.1e-32 141.7 244 41.8
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 1.1e-31 141.4 235 40.9
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 1.4e-31 141.0 258 42.2
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.4e-31 141.0 123 57.7
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 3.1e-31 139.8 268 38.8
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 4.0e-31 139.4 267 42.7
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 2.0e-30 137.1 273 40.3
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 2.6e-30 136.7 238 41.2
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 3.4e-30 136.3 260 41.2
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 1.7e-29 134.0 281 42.0
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 2.9e-29 133.3 100 64.0
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 8.4e-29 131.7 251 41.0
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.1e-27 127.1 283 38.9
Haze_17061 Corylus avellana HOM05D003373 ORTHO05D004419 4.6e-27 125.9 81 69.1
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 1.0e-26 124.8 281 37.0
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 2.3e-26 123.6 233 39.1
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 2.1e-24 117.1 116 52.6
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 1.1e-23 114.8 279 36.6
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 1.8e-23 114.0 299 33.4
BcaC02g11860 Brassica carinata HOM05D021391 ORTHO05D016766 2.4e-23 113.6 111 66.7
BcaC02g11861 Brassica carinata HOM05D021391 ORTHO05D016766 2.4e-23 113.6 111 66.7
C04p10490 Brassica napus HOM05D021391 ORTHO05D016766 2.4e-23 113.6 111 66.7
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 4.0e-23 112.8 291 36.4
BcaC03g15848 Brassica carinata HOM05D007458 ORTHO05D009533 5.3e-23 112.5 87 70.1
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.0e-22 110.5 151 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 5.8e-22 109.0 161 41.6
BcaC04g23617 Brassica carinata HOM05D021391 ORTHO05D016766 7.6e-22 108.6 112 67.9
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 9.9e-22 108.2 295 33.9
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 2.2e-21 107.1 264 36.4
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 2.9e-21 106.7 139 44.6
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 8.4e-21 105.1 287 34.5
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 1.9e-20 104.0 271 35.4
Haze_04255 Corylus avellana HOM05D003373 ORTHO05D004419 5.4e-20 102.4 81 55.6
SalBow8G0803 Salvia bowleyana HOM05D003373 ORTHO05D004419 5.4e-20 102.4 82 57.3
Nitab4.5_0003732g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 9.3e-20 101.7 209 35.9
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 2.1e-19 100.5 234 36.8
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 2.1e-19 100.5 156 38.5
A07p13300 Brassica napus HOM05D003373 ORTHO05D041218 4.6e-19 99.4 101 57.4
BraA07t29101Z Brassica rapa HOM05D003373 ORTHO05D041218 4.6e-19 99.4 101 57.4
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 7.9e-19 98.6 164 39.0
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.0e-18 98.2 274 35.4
A07p04350 Brassica napus HOM05D021391 ORTHO05D016766 3.0e-18 96.7 111 62.2
Lsat_1_v5_gn_8_36201 Lactuca sativa HOM05D003373 ORTHO05D004419 4.3e-17 92.8 106 46.2
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 5.6e-17 92.4 198 34.3
TAR622G0335 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.3e-16 91.3 198 40.9
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.6e-16 90.9 275 35.6
SMO141G0251 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 4.8e-16 89.4 206 35.4
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 4.8e-16 89.4 317 29.7
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 1.4e-15 87.8 315 31.1
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 1.4e-15 87.8 315 31.1
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 1.4e-15 87.8 276 30.4
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 2.4e-15 87.0 272 33.5
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 4.0e-15 86.3 79 53.2
Peaxi162Scf00026g00225 Petunia axillaris HOM05D003373 ORTHO05D004419 2.6e-14 83.6 262 33.6
CBR_g4061 Chara braunii HOM05D003373 ORTHO05D004419 5.8e-14 82.4 103 36.9
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 6.4e-13 79.0 281 32.0
Manes.12G071300 Manihot esculenta HOM05D003373 ORTHO05D004419 3.5e-11 73.2 56 60.7
Prupe.1G265800 Prunus persica HOM05D003373 ORTHO05D004419 1.9e-09 67.4 175 44.6
HPP92_019602 Vanilla planifolia HOM05D003373 ORTHO05D004419 8.1e-08 62.0 235 31.1
SalBow3G2377 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.4e-07 61.2 58 51.7
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 2.4e-07 60.5 49 65.3
SalBow8G0677 Salvia bowleyana HOM05D003373 ORTHO05D004419 3.1e-07 60.1 58 51.7
BolC9t53565H Brassica oleracea HOM05D021391 ORTHO05D016766 7.6e-06 55.5 57 66.7


User provided reference genes

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