Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p22340 Brassica napus HOM05D000960 ORTHO05D000683 9.4e-128 460.3 248 100.0
BcaC07g39235 Brassica carinata HOM05D000960 ORTHO05D027170 4.3e-80 302.0 271 70.1
BraA08t34718Z Brassica rapa HOM05D000960 ORTHO05D000683 8.3e-76 287.7 256 72.3
A08p27860 Brassica napus HOM05D000960 ORTHO05D000683 5.1e-73 278.5 256 71.9
CARHR024540 Cardamine hirsuta HOM05D000960 ORTHO05D000683 1.5e-72 276.9 258 68.6
BcaB07g32403 Brassica carinata HOM05D000960 ORTHO05D000683 2.8e-71 272.7 259 69.1
Sp1g21510 Schrenkiella parvula HOM05D000960 ORTHO05D000683 4.7e-71 271.9 262 68.7
Thhalv10007419m.g Eutrema salsugineum HOM05D000960 ORTHO05D000683 8.9e-70 267.7 255 66.7
A09p40720 Brassica napus HOM05D000960 ORTHO05D000683 9.2e-67 257.7 257 64.6
AT1G24160 Arabidopsis thaliana HOM05D000960 ORTHO05D000683 1.0e-65 254.2 256 63.3
BraA09t39566Z Brassica rapa HOM05D000960 ORTHO05D000683 1.0e-65 254.2 257 64.2
BcaC05g26318 Brassica carinata HOM05D000960 ORTHO05D000683 6.6e-65 251.5 258 65.9
BolC5t31032H Brassica oleracea HOM05D000960 ORTHO05D000683 6.6e-65 251.5 258 65.9
Carub.0001s2365 Capsella rubella HOM05D000960 ORTHO05D000683 2.5e-64 249.6 262 61.1
C05p23320 Brassica napus HOM05D000960 ORTHO05D000683 1.6e-63 246.9 258 64.3
AL1G37990 Arabidopsis lyrata HOM05D000960 ORTHO05D000683 2.1e-58 229.9 242 61.6
BcaB03g14118 Brassica carinata HOM05D000960 ORTHO05D000683 2.6e-53 213.0 253 60.1
BcaC06g35082 Brassica carinata HOM05D000960 ORTHO05D000683 3.4e-53 212.6 254 60.2
Aa31LG7G7930 Aethionema arabicum HOM05D000960 ORTHO05D000683 2.2e-44 183.3 255 55.3
THA.LOC104822064 Tarenaya hassleriana HOM05D000960 ORTHO05D000683 2.1e-39 166.8 257 47.1
BolC8t49877H Brassica oleracea HOM05D047870 ORTHO05D040379 4.8e-39 165.6 128 78.1
AT1G70100 Arabidopsis thaliana HOM05D000960 ORTHO05D000683 2.7e-34 149.8 255 46.7
A07p36580 Brassica napus HOM05D000960 ORTHO05D000683 6.0e-34 148.7 258 48.1
BraA07t31224Z Brassica rapa HOM05D000960 ORTHO05D000683 6.0e-34 148.7 258 48.1
C08p22350 Brassica napus HOM05D000960 ORTHO05D000683 3.0e-33 146.4 175 60.6
BolC6t39471H Brassica oleracea HOM05D000960 ORTHO05D000683 5.1e-33 145.6 258 49.2
BolC8t49875H Brassica oleracea HOM05D000960 ORTHO05D000683 5.1e-33 145.6 154 66.2
THA.LOC104822949 Tarenaya hassleriana HOM05D000960 ORTHO05D000683 6.7e-33 145.2 269 45.0
A08p27880 Brassica napus HOM05D000960 ORTHO05D027313 1.8e-30 137.1 183 51.9
BraA08t34720Z Brassica rapa HOM05D001714 ORTHO05D027313 2.4e-30 136.7 202 49.0
Carub.0002s1677 Capsella rubella HOM05D000960 ORTHO05D000683 3.4e-29 132.9 253 45.1
BolC7t42525H Brassica oleracea HOM05D000960 ORTHO05D000683 3.8e-28 129.4 207 51.2
C08p22320 Brassica napus HOM05D000960 ORTHO05D000683 1.3e-25 120.9 116 66.4
C06p43980 Brassica napus HOM05D000960 ORTHO05D000683 2.3e-25 120.2 257 43.6
AL2G29350 Arabidopsis lyrata HOM05D000960 ORTHO05D000683 3.0e-25 119.8 254 40.6
C08p22380 Brassica napus HOM05D047870 ORTHO05D040379 4.1e-22 109.4 128 60.2
CARHR063190 Cardamine hirsuta HOM05D000960 ORTHO05D000683 2.6e-21 106.7 258 41.1
Thecc.02G239300 Theobroma cacao HOM05D000960 ORTHO05D000683 2.9e-20 103.2 258 35.3
Ciclev10031371m.g Citrus clementina HOM05D000960 ORTHO05D000683 3.8e-20 102.8 256 39.8
QL03p067374 Quercus lobata HOM05D000960 ORTHO05D000683 6.5e-20 102.1 262 36.3
Sp5g25220 Schrenkiella parvula HOM05D000960 ORTHO05D000683 1.4e-19 100.9 326 34.7
Atru.chr11.1931 Acer truncatum HOM05D000960 ORTHO05D000683 4.2e-19 99.4 219 40.6
Thhalv10018633m.g Eutrema salsugineum HOM05D000960 ORTHO05D000683 7.2e-19 98.6 128 53.1
COL.COLO4_36280 Corchorus olitorius HOM05D000960 ORTHO05D000683 1.2e-18 97.8 269 34.9
Cpa.g.sc5.326 Carica papaya HOM05D000960 ORTHO05D000683 1.6e-18 97.4 206 42.7
Gohir.D02G167000 Gossypium hirsutum HOM05D000960 ORTHO05D000683 1.6e-18 97.4 257 36.2
Gohir.A03G143900 Gossypium hirsutum HOM05D000960 ORTHO05D000683 4.6e-18 95.9 252 36.1
Duzib248G0907 Durio zibethinus HOM05D000960 ORTHO05D000683 1.8e-17 94.0 168 42.3
Gorai.005G187400 Gossypium raimondii HOM05D000960 ORTHO05D000683 3.9e-17 92.8 252 35.3
Phvul.003G056200 Phaseolus vulgaris HOM05D000960 ORTHO05D000683 5.1e-17 92.4 197 41.1
Haze_12120 Corylus avellana HOM05D000960 ORTHO05D000683 8.8e-17 91.7 157 41.4
VMungo0251G0151 Vigna mungo HOM05D000960 ORTHO05D000683 8.8e-17 91.7 196 39.3
Ca_24168_v3 Cicer arietinum L. HOM05D000960 ORTHO05D000683 1.5e-16 90.9 184 40.8
Duzib268G1671 Durio zibethinus HOM05D000960 ORTHO05D000683 5.7e-16 89.0 244 35.7
Potri.010G038100 Populus trichocarpa HOM05D000960 ORTHO05D000683 7.4e-16 88.6 238 35.7
CiPaw.06G076600 Carya illinoinensis HOM05D000960 ORTHO05D000683 1.7e-15 87.4 192 40.6
Glyma.01G037700 Glycine max HOM05D000960 ORTHO05D000683 4.8e-15 85.9 198 38.4
Sabra08G0146300 Salix brachista HOM05D000960 ORTHO05D000683 8.2e-15 85.1 186 37.6
Phvul.002G077200 Phaseolus vulgaris HOM05D000960 ORTHO05D000683 1.1e-14 84.7 183 41.0
Sabra10G0028000 Salix brachista HOM05D000960 ORTHO05D000683 2.4e-14 83.6 258 34.1
Actinidia14992 Actinidia chinensis HOM05D000960 ORTHO05D000683 3.1e-14 83.2 277 33.6
Glyma.02G027100 Glycine max HOM05D000960 ORTHO05D000683 3.1e-14 83.2 262 34.0
Manes.05G092100 Manihot esculenta HOM05D000960 ORTHO05D000683 3.1e-14 83.2 264 31.8
Medtr5g036560 Medicago truncatula HOM05D000960 ORTHO05D000683 3.1e-14 83.2 221 38.0
VMungo1215G3280 Vigna mungo HOM05D000960 ORTHO05D000683 4.1e-14 82.8 202 38.1
vmacro01205 Vaccinium macrocarpon HOM05D000960 ORTHO05D000683 6.9e-14 82.0 116 45.7
Sabra10G0000200 Salix brachista HOM05D000960 ORTHO05D000683 1.2e-13 81.3 255 33.3
arahy.Tifrunner.gnm1.ann1.34UDDJ Arachis hypogaea HOM05D000960 ORTHO05D000683 2.0e-13 80.5 174 39.1
arahy.Tifrunner.gnm1.ann1.SSVW3N Arachis hypogaea HOM05D000960 ORTHO05D000683 2.0e-13 80.5 182 39.6
Lalb_Chr09g0326561 Lupinus albus HOM05D000960 ORTHO05D000683 2.0e-13 80.5 209 35.9
Potri.008G192800 Populus trichocarpa HOM05D000960 ORTHO05D000683 4.5e-13 79.3 193 35.8
GSVIVG01020143001 Vitis vinifera HOM05D000960 ORTHO05D000683 7.7e-13 78.6 291 33.3
arahy.Tifrunner.gnm1.ann1.25IG2V Arachis hypogaea HOM05D000960 ORTHO05D000683 1.3e-12 77.8 201 35.8
arahy.Tifrunner.gnm1.ann1.RCW3IX Arachis hypogaea HOM05D000960 ORTHO05D000683 1.7e-12 77.4 189 37.6
Glyma.08G292700 Glycine max HOM05D000960 ORTHO05D000683 2.2e-12 77.0 116 44.8
Dinv24919 Davidia involucrata HOM05D000960 ORTHO05D000683 2.9e-12 76.6 182 36.3
Eucgr.B02573 Eucalyptus grandis HOM05D000960 ORTHO05D000683 6.5e-12 75.5 174 37.9
Manes.01G194900 Manihot esculenta HOM05D000960 ORTHO05D000683 6.5e-12 75.5 266 30.8
BcaC06g35077 Brassica carinata HOM05D000960 ORTHO05D000683 8.5e-12 75.1 144 43.1
PGR119G2016 Punica granatum HOM05D000960 ORTHO05D000683 1.1e-11 74.7 186 38.7
Glyma.18G130700 Glycine max HOM05D000960 ORTHO05D000683 1.4e-11 74.3 247 32.0
EL10Ac6g13105 Beta vulgaris HOM05D000960 ORTHO05D000683 1.9e-11 73.9 245 33.5
BcaB03g11969 Brassica carinata HOM05D000960 ORTHO05D027313 2.5e-11 73.6 43 88.4
Prupe.1G261800 Prunus persica HOM05D000960 ORTHO05D000683 2.5e-11 73.6 208 34.6
Dinv31129 Davidia involucrata HOM05D000960 ORTHO05D000683 3.2e-11 73.2 257 34.6
Glyma.14G139300 Glycine max HOM05D000960 ORTHO05D000683 3.2e-11 73.2 137 41.6
TPR.G17333 Trifolium pratense HOM05D000960 ORTHO05D000683 3.2e-11 73.2 117 47.0
MELO3C012033.2 Cucumis melo HOM05D000960 ORTHO05D000683 4.2e-11 72.8 182 37.9
CsaV3_5G031970 Cucumis sativus L. HOM05D000960 ORTHO05D000683 5.5e-11 72.4 183 38.3
FvH4_4g35241 Fragaria vesca HOM05D000960 ORTHO05D000683 7.2e-11 72.0 207 34.8
FAN12G2309 Fragaria x ananassa HOM05D000960 ORTHO05D000683 7.2e-11 72.0 207 34.8
TAR374G1514 Trochodendron aralioides HOM05D000960 ORTHO05D000683 9.4e-11 71.6 272 30.1
FAN07G1284 Fragaria x ananassa HOM05D000960 ORTHO05D000683 1.6e-10 70.9 192 35.4
Sed0020261 Sechium edule HOM05D000960 ORTHO05D000683 2.1e-10 70.5 197 36.0
SalBow2G0989 Salvia bowleyana HOM05D000960 ORTHO05D000683 2.7e-10 70.1 205 37.1
MSTRG.2374 Avicennia marina HOM05D000960 ORTHO05D000683 3.6e-10 69.7 196 37.2
Hma1.2p1_0289F.1_g114630 Hydrangea macrophylla HOM05D000960 ORTHO05D000683 3.6e-10 69.7 279 30.1
Psat2g114120 Pisum sativum HOM05D000960 ORTHO05D000683 3.6e-10 69.7 192 37.5
FAN17G2121 Fragaria x ananassa HOM05D000960 ORTHO05D000683 4.7e-10 69.3 190 35.8
ClCG05G024930 Citrullus lanatus HOM05D000960 ORTHO05D000683 6.1e-10 68.9 181 35.9
SalBow2G1351 Salvia bowleyana HOM05D000960 ORTHO05D000683 6.1e-10 68.9 206 37.4
RcHm_v2.0_Chr4g0444851 Rosa chinensis HOM05D000960 ORTHO05D000683 1.4e-09 67.8 207 34.8
ECA233G0896 Erigeron canadensis HOM05D000960 ORTHO05D000683 2.3e-09 67.0 292 31.8
Nn4g22945 Nelumbo nucifera HOM05D000960 ORTHO05D000683 2.3e-09 67.0 272 31.2
Rhsim12G0126300 Rhododendron simsii HOM05D000960 ORTHO05D000683 2.3e-09 67.0 277 32.9
Cc11_g14030 Coffea canephora HOM05D000960 ORTHO05D000683 5.1e-09 65.9 218 36.2
Lj3A1047T40 Lonicera japonica HOM05D000960 ORTHO05D000683 5.1e-09 65.9 289 32.5
Migut.L01382 Erythranthe guttata HOM05D000960 ORTHO05D000683 6.7e-09 65.5 184 39.7
Aqoxy3G03146 Aquilegia oxysepala HOM05D000960 ORTHO05D000683 8.8e-09 65.1 207 33.3
FAN22G0818 Fragaria x ananassa HOM05D000960 ORTHO05D000683 8.8e-09 65.1 206 34.0
CSS0029704 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 2.0e-08 63.9 163 35.0
SGA_v2.0_scaffold166G38322 Striga asiatica HOM05D000960 ORTHO05D000683 3.3e-08 63.2 129 43.4
BcaC07g39233 Brassica carinata HOM05D000960 ORTHO05D027313 4.4e-08 62.8 32 100.0
Lalb_Chr16g0382561 Lupinus albus HOM05D000960 ORTHO05D000683 4.4e-08 62.8 212 34.4
Lj2g0010544 Lotus japonicus HOM05D000960 ORTHO05D000683 7.4e-08 62.0 105 40.0
CAN.G549.9 Capsicum annuum HOM05D000960 ORTHO05D000683 1.3e-07 61.2 168 38.1
SalBow8G5044 Salvia bowleyana HOM05D000960 ORTHO05D000683 2.2e-07 60.5 234 32.1
Lalb_Chr05g0217291 Lupinus albus HOM05D000960 ORTHO05D000683 4.8e-07 59.3 242 31.8
Sc11g0001530 Simmondsia chinensis HOM05D000960 ORTHO05D000683 4.8e-07 59.3 69 50.7
CSS0040041 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 6.3e-07 58.9 234 31.2
Eucgr.B03376 Eucalyptus grandis HOM05D000960 ORTHO05D000683 6.3e-07 58.9 239 31.4
Oeu015865.1 Olea europaea HOM05D000960 ORTHO05D000683 8.2e-07 58.5 202 36.1
MSTRG.643 Avicennia marina HOM05D000960 ORTHO05D000683 1.1e-06 58.2 190 36.8
Nitab4.5_0001577g0030 Nicotiana tabacum HOM05D000960 ORTHO05D000683 1.1e-06 58.2 137 38.0
Sopen05g002440 Solanum pennellii HOM05D000960 ORTHO05D000683 2.4e-06 57.0 144 37.5
MSTRG.7855 Avicennia marina HOM05D000960 ORTHO05D000683 3.1e-06 56.6 194 35.1
AUR62026316 Chenopodium quinoa HOM05D000960 ORTHO05D000683 3.1e-06 56.6 85 47.1
MD13G1085000 Malus domestica HOM05D000960 ORTHO05D000683 3.1e-06 56.6 215 31.6
vmacro22660 Vaccinium macrocarpon HOM05D000960 ORTHO05D000683 3.1e-06 56.6 275 31.6
MD16G1084200 Malus domestica HOM05D000960 ORTHO05D000683 4.1e-06 56.2 207 32.9
Rhsim12G0051900 Rhododendron simsii HOM05D000960 ORTHO05D000683 4.1e-06 56.2 271 28.8
Sc04g0008700 Simmondsia chinensis HOM05D000960 ORTHO05D000683 5.3e-06 55.8 169 34.3


User provided reference genes

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