Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p22090 Brassica napus HOM05D003497 ORTHO05D024176 2.7e-183 645.2 321 100.0
BolC8t49854H Brassica oleracea HOM05D003497 ORTHO05D024176 2.7e-183 645.2 321 100.0
BcaC07g39213 Brassica carinata HOM05D003497 ORTHO05D024176 6.8e-155 550.8 322 87.9
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 1.9e-80 303.5 359 55.4
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 1.4e-59 234.2 371 46.9
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 3.2e-59 233.0 372 46.2
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 3.2e-59 233.0 367 46.6
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 4.5e-58 229.2 367 46.3
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 6.6e-57 225.3 360 45.3
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 8.6e-57 224.9 375 44.3
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 1.6e-55 220.7 375 44.0
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 9.2e-51 204.9 394 41.4
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.8e-47 193.4 383 39.9
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.1e-46 191.4 364 40.9
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 1.8e-46 190.7 360 41.4
A08p28030 Brassica napus HOM05D062008 ORTHO05D024176 3.4e-45 186.4 327 43.4
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 1.9e-43 180.6 358 41.1
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 3.9e-41 172.9 377 37.9
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 8.3e-36 155.2 258 43.8
BraA08t34733Z Brassica rapa HOM05D062008 ORTHO05D024176 5.4e-35 152.5 99 82.8
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 7.1e-35 152.1 267 41.9
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 9.2e-35 151.8 331 38.1
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.2e-34 151.4 270 42.6
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 1.6e-34 151.0 328 37.5
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 1.6e-34 151.0 328 37.8
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 2.7e-34 150.2 331 37.5
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 6.6e-33 145.6 328 37.2
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 1.5e-32 144.4 319 36.7
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.9e-32 144.1 376 37.0
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 3.6e-31 139.8 338 35.5
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.3e-28 131.3 342 34.2
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 1.7e-28 131.0 275 37.8
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 8.4e-28 128.6 293 37.2
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 2.2e-20 104.0 384 29.4
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 9.3e-19 98.6 364 29.9
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 2.3e-17 94.0 271 33.9
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 3.0e-17 93.6 386 26.9
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 7.3e-16 89.0 267 33.0
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 2.1e-15 87.4 379 26.6
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 2.1e-15 87.4 382 28.8
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 4.0e-14 83.2 373 29.5
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.2e-13 81.6 342 28.4
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 3.4e-13 80.1 115 50.4
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 3.4e-13 80.1 119 40.3
BcaC02g08834 Brassica carinata HOM05D003497 ORTHO05D003964 5.8e-13 79.3 124 48.4
BcaC02g08838 Brassica carinata HOM05D003497 ORTHO05D003964 5.8e-13 79.3 124 48.4
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 5.8e-13 79.3 159 40.3
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 1.7e-12 77.8 156 39.7
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 3.8e-12 76.6 284 28.9
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.8e-12 76.6 294 27.9
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 4.9e-12 76.3 328 28.0
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 6.4e-12 75.9 167 37.7
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 8.4e-12 75.5 294 27.6
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 1.1e-11 75.1 180 35.0
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 3.2e-11 73.6 336 25.9
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 3.2e-11 73.6 270 28.5
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 3.2e-11 73.6 132 38.6
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 4.2e-11 73.2 273 26.4
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 5.4e-11 72.8 180 36.1
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 7.1e-11 72.4 294 27.2
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.2e-10 71.6 137 36.5
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 1.2e-10 71.6 150 36.7
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 1.6e-10 71.2 145 37.9
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 1.6e-10 71.2 205 32.2
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 2.7e-10 70.5 194 32.0
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 3.5e-10 70.1 103 49.5
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 3.5e-10 70.1 175 34.3
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 3.5e-10 70.1 337 27.3
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 4.6e-10 69.7 336 25.9
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 6.0e-10 69.3 130 39.2
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 6.0e-10 69.3 189 34.4
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 7.9e-10 68.9 347 24.8
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 1.8e-09 67.8 125 35.2
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 1.8e-09 67.8 135 38.5
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 2.3e-09 67.4 151 36.4
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 3.0e-09 67.0 138 39.9
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 6.7e-09 65.9 274 28.5
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 1.1e-08 65.1 151 37.1
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 1.5e-08 64.7 198 31.3
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.5e-08 64.7 256 27.0
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 1.9e-08 64.3 171 34.5
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 3.3e-08 63.5 150 35.3
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 3.3e-08 63.5 150 35.3
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 3.3e-08 63.5 175 32.0
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.3e-08 63.2 151 35.1
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 5.6e-08 62.8 152 32.9
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 5.6e-08 62.8 394 25.1
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 7.4e-08 62.4 132 37.1
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 9.6e-08 62.0 172 28.5
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 9.6e-08 62.0 138 35.5
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 9.6e-08 62.0 223 28.7
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 2.1e-07 60.8 183 30.1
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 2.1e-07 60.8 123 38.2
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.8e-07 60.5 140 33.6
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 2.8e-07 60.5 169 33.7
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 2.8e-07 60.5 331 23.0
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 3.7e-07 60.1 197 29.9
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 3.7e-07 60.1 152 30.9
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 4.8e-07 59.7 144 34.0
C03p57300 Brassica napus HOM05D003497 ORTHO05D003964 4.8e-07 59.7 101 44.6
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 6.2e-07 59.3 123 36.6
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 8.1e-07 58.9 135 31.9
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 8.1e-07 58.9 163 32.5
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 1.4e-06 58.2 131 32.1
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 1.4e-06 58.2 182 32.4
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 2.4e-06 57.4 120 36.7
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 3.1e-06 57.0 161 30.4
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 3.1e-06 57.0 161 30.4
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 5.3e-06 56.2 161 30.4
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 6.9e-06 55.8 205 26.8
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 6.9e-06 55.8 146 32.2
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 9.0e-06 55.5 322 22.0
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 9.0e-06 55.5 125 34.4
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 9.0e-06 55.5 146 32.2


User provided reference genes

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