Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 6.4e-55 217.2 115 100.0
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.0e-44 183.3 101 96.0
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 2.1e-42 175.6 106 90.6
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 2.9e-39 165.2 91 96.7
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 1.0e-36 156.8 95 89.5
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.0e-36 156.8 84 97.6
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.2e-31 139.0 94 79.8
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.4e-30 136.3 91 79.1
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 2.5e-30 135.6 89 83.1
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 3.2e-30 135.2 89 84.3
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 4.2e-30 134.8 93 80.6
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.6e-29 132.9 92 79.3
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 2.1e-29 132.5 97 72.2
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 1.0e-28 130.2 102 75.5
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.3e-28 129.8 82 84.1
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.8e-28 129.4 87 79.3
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.8e-28 129.4 93 77.4
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 5.1e-28 127.9 102 74.5
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 8.7e-28 127.1 82 80.5
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.5e-27 126.3 83 81.9
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.9e-27 125.9 86 81.4
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.9e-27 125.9 88 77.3
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.9e-27 125.9 85 78.8
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 3.3e-27 125.2 82 80.5
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 3.3e-27 125.2 89 75.3
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 1.3e-26 123.2 95 71.6
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 2.1e-26 122.5 95 71.6
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 2.1e-26 122.5 89 75.3
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 2.1e-26 122.5 89 75.3
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 3.7e-26 121.7 86 72.1
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 3.7e-26 121.7 86 72.1
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 2.4e-25 119.0 111 61.3
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 9.0e-25 117.1 87 70.1
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 1.2e-24 116.7 70 81.4
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.2e-24 116.7 82 79.3
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 2.0e-24 115.9 67 80.6
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 2.6e-24 115.5 93 66.7
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 3.4e-24 115.2 73 78.1
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 7.6e-24 114.0 82 70.7
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.0e-23 113.6 74 74.3
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.0e-23 113.6 81 72.8
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 1.3e-23 113.2 80 68.8
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 5.0e-23 111.3 72 76.4
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 5.0e-23 111.3 90 64.4
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 8.4e-23 110.5 70 77.1
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 1.1e-22 110.2 70 77.1
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.1e-22 110.2 65 76.9
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.4e-22 109.8 70 74.3
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 1.4e-22 109.8 65 76.9
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.4e-22 109.8 64 79.7
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 2.5e-22 109.0 70 75.7
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 2.5e-22 109.0 62 82.3
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 3.2e-22 108.6 65 78.5
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.2e-22 108.6 65 78.5
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.2e-22 108.6 65 78.5
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 3.2e-22 108.6 65 78.5
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 4.2e-22 108.2 74 68.9
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 4.2e-22 108.2 81 67.9
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 5.5e-22 107.8 81 69.1
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 5.5e-22 107.8 62 80.6
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 7.2e-22 107.5 71 73.2
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.2e-22 107.5 65 76.9
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 7.2e-22 107.5 80 67.5
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 9.3e-22 107.1 86 65.1
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 9.3e-22 107.1 93 62.4
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 1.2e-21 106.7 62 77.4
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 1.6e-21 106.3 83 65.1
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.6e-21 106.3 81 67.9
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.6e-21 106.3 72 73.6
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.1e-21 105.9 85 61.2
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.1e-21 105.9 85 61.2
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 2.1e-21 105.9 72 70.8
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 2.1e-21 105.9 62 75.8
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 2.7e-21 105.5 69 73.9
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.7e-21 105.5 65 76.9
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 2.7e-21 105.5 62 79.0
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 3.5e-21 105.1 99 59.6
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 3.5e-21 105.1 64 76.6
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 4.6e-21 104.8 72 73.6
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 4.6e-21 104.8 89 59.6
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 4.6e-21 104.8 73 72.6
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 6.1e-21 104.4 69 69.6
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 6.1e-21 104.4 69 69.6
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 6.1e-21 104.4 81 66.7
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 6.1e-21 104.4 69 72.5
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 6.1e-21 104.4 98 58.2
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 7.9e-21 104.0 72 70.8
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 7.9e-21 104.0 81 65.4
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 7.9e-21 104.0 72 72.2
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 7.9e-21 104.0 64 78.1
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 7.9e-21 104.0 61 77.0
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 1.3e-20 103.2 74 68.9
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 1.3e-20 103.2 74 68.9
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 1.3e-20 103.2 90 58.9
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.8e-20 102.8 84 66.7
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.3e-20 102.4 80 66.2
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 3.0e-20 102.1 88 59.1
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 3.0e-20 102.1 72 69.4
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.9e-20 101.7 71 67.6
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.9e-20 101.7 72 68.1
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 5.1e-20 101.3 75 65.3
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 6.7e-20 100.9 61 73.8
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 6.7e-20 100.9 86 64.0
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 6.7e-20 100.9 85 61.2
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 8.7e-20 100.5 75 64.0
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 1.1e-19 100.1 81 66.7
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 1.5e-19 99.8 91 59.3
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.5e-19 99.8 88 58.0
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 1.5e-19 99.8 85 58.8
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.5e-19 99.8 73 67.1
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.9e-19 99.4 61 72.1
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 4.3e-19 98.2 70 67.1
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 4.3e-19 98.2 74 67.6
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.3e-19 98.2 69 63.8
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 4.3e-19 98.2 62 71.0
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.3e-19 98.2 73 65.8
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 5.7e-19 97.8 69 69.6
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 5.7e-19 97.8 64 67.2
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 7.4e-19 97.4 62 74.2
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 7.4e-19 97.4 72 69.4
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 9.7e-19 97.1 122 48.4
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 9.7e-19 97.1 74 66.2
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 1.6e-18 96.3 69 68.1
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 2.8e-18 95.5 90 57.8
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 8.2e-18 94.0 73 63.0
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 1.1e-17 93.6 67 68.7
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 1.4e-17 93.2 94 55.3
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 1.4e-17 93.2 94 55.3
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 1.4e-17 93.2 61 68.9
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.8e-17 92.8 94 55.3
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.4e-17 92.4 97 53.6
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.4e-17 92.4 97 53.6
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 2.4e-17 92.4 82 56.1
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 9.0e-17 90.5 81 53.1
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.5e-16 89.7 61 67.2
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 5.9e-16 87.8 75 57.3
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 1.0e-15 87.0 75 60.0
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 5.0e-15 84.7 63 66.7
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 8.5e-15 84.0 61 67.2
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.1e-14 83.6 79 51.9
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.9e-14 82.8 81 53.1
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.5e-14 82.4 95 49.5
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 7.2e-14 80.9 65 63.1
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 9.4e-14 80.5 64 57.8
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 9.4e-14 80.5 84 51.2
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.1e-13 79.3 65 61.5
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.7e-13 79.0 65 61.5
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 3.6e-13 78.6 73 54.8
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 6.1e-13 77.8 67 58.2
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 4.3e-11 71.6 61 52.5
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 7.4e-11 70.9 59 61.0
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 8.2e-10 67.4 49 65.3
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 2.6e-08 62.4 55 69.1
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 5.9e-08 61.2 71 43.7
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 6.5e-07 57.8 32 78.1
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.1e-06 57.0 31 80.6


User provided reference genes

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