Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p21320 Brassica napus HOM05D032035 ORTHO05D027995 6.1e-163 577.4 288 100.0
BolC8t49771H Brassica oleracea HOM05D032035 ORTHO05D027995 5.2e-130 468.0 360 72.5
A04p32640 Brassica napus HOM05D032035 ORTHO05D027995 4.3e-15 86.3 59 76.3
Thhalv10006527m.g Eutrema salsugineum HOM05D004450 ORTHO05D005491 1.1e-10 71.6 39 92.3
BcaB07g32225 Brassica carinata HOM05D004450 ORTHO05D005491 1.4e-10 71.2 39 92.3
Cfa015933 Carpinus fangiana HOM05D004450 ORTHO05D005491 1.4e-10 71.2 39 92.3
Aa31LG7G6050 Aethionema arabicum HOM05D004450 ORTHO05D005491 1.9e-10 70.9 39 89.7
A09p42700 Brassica napus HOM05D004450 ORTHO05D005491 3.2e-10 70.1 39 89.7
BraA09t39746Z Brassica rapa HOM05D004450 ORTHO05D005491 3.2e-10 70.1 39 89.7
CiPaw.05G231800 Carya illinoinensis HOM05D004450 ORTHO05D005491 3.2e-10 70.1 39 89.7
Haze_00557 Corylus avellana HOM05D004450 ORTHO05D005491 4.1e-10 69.7 39 89.7
MD08G1176200 Malus domestica HOM05D004450 ORTHO05D005491 1.2e-09 68.2 39 87.2
MD15G1361900 Malus domestica HOM05D004450 ORTHO05D005491 1.2e-09 68.2 39 87.2
RcHm_v2.0_Chr7g0240181 Rosa chinensis HOM05D004450 ORTHO05D005491 1.2e-09 68.2 39 87.2
Prupe.1G510000 Prunus persica HOM05D004450 ORTHO05D005491 2.1e-09 67.4 39 87.2
TWI56G0952 Tripterygium wilfordii HOM05D004450 ORTHO05D005491 2.7e-09 67.0 39 87.2
Manes.18G071100 Manihot esculenta HOM05D004450 ORTHO05D005491 3.5e-09 66.6 39 84.6
BcaC05g26132 Brassica carinata HOM05D004450 ORTHO05D005491 6.0e-09 65.9 39 87.2
BolC5t30807H Brassica oleracea HOM05D004450 ORTHO05D005491 6.0e-09 65.9 39 87.2
CARHR152630 Cardamine hirsuta HOM05D004450 ORTHO05D027995 6.0e-09 65.9 39 87.2
CANSAT25G3861 Cannabis sativa HOM05D004450 ORTHO05D005491 1.0e-08 65.1 39 84.6
QL12p035690 Quercus lobata HOM05D004450 ORTHO05D005491 1.0e-08 65.1 39 84.6
Sabra05G0127500 Salix brachista HOM05D004450 ORTHO05D005491 1.0e-08 65.1 39 84.6
Thecc.08G113700 Theobroma cacao HOM05D004450 ORTHO05D005491 1.0e-08 65.1 39 84.6
C05p21090 Brassica napus HOM05D004450 ORTHO05D005491 1.3e-08 64.7 39 84.6
Dinv13057 Davidia involucrata HOM05D004450 ORTHO05D005491 1.7e-08 64.3 39 84.6
ClCG03G008890 Citrullus lanatus HOM05D004450 ORTHO05D005491 3.0e-08 63.5 39 82.1
FAN04G1322 Fragaria x ananassa HOM05D004450 ORTHO05D005491 3.0e-08 63.5 36 86.1
Sed0020591 Sechium edule HOM05D004450 ORTHO05D005491 3.0e-08 63.5 39 82.1
ECA232G3655 Erigeron canadensis HOM05D004450 ORTHO05D005491 5.1e-08 62.8 39 79.5
Eucgr.H00921 Eucalyptus grandis HOM05D004450 ORTHO05D005491 5.1e-08 62.8 39 84.6
FvH4_5g38230 Fragaria vesca HOM05D004450 ORTHO05D005491 5.1e-08 62.8 35 88.6
FAN08G3465 Fragaria x ananassa HOM05D004450 ORTHO05D005491 5.1e-08 62.8 35 88.6
FAN18G0908 Fragaria x ananassa HOM05D004450 ORTHO05D005491 5.1e-08 62.8 35 88.6
Duzib093G0537 Durio zibethinus HOM05D004450 ORTHO05D005491 6.6e-08 62.4 38 81.6
Actinidia10291 Actinidia chinensis HOM05D004450 ORTHO05D005491 8.6e-08 62.0 39 79.5
Ciclev10003301m.g Citrus clementina HOM05D004450 ORTHO05D005491 8.6e-08 62.0 38 81.6
HanXRQChr11g0321021 Helianthus annuus HOM05D004450 ORTHO05D005491 8.6e-08 62.0 39 79.5
Psat5g136520 Pisum sativum HOM05D004450 ORTHO05D005491 8.6e-08 62.0 35 85.7
FAN08G1690 Fragaria x ananassa HOM05D003397 ORTHO05D004390 1.1e-07 61.6 39 74.4
FAN13G1849 Fragaria x ananassa HOM05D004450 ORTHO05D005491 1.1e-07 61.6 35 85.7
Glyma.04G107100 Glycine max HOM05D004450 ORTHO05D005491 1.1e-07 61.6 35 85.7
Glyma.06G106900 Glycine max HOM05D004450 ORTHO05D005491 1.1e-07 61.6 35 85.7
VMungo1309G1299 Vigna mungo HOM05D004450 ORTHO05D005491 1.1e-07 61.6 35 85.7
arahy.Tifrunner.gnm1.ann1.KN8WKR Arachis hypogaea HOM05D004450 ORTHO05D005491 1.9e-07 60.8 35 85.7
Ca_26313_v3 Cicer arietinum L. HOM05D004450 ORTHO05D005491 1.9e-07 60.8 35 85.7
MELO3C022819.2 Cucumis melo HOM05D004450 ORTHO05D005491 1.9e-07 60.8 39 76.9
Gohir.A02G075404 Gossypium hirsutum HOM05D004450 ORTHO05D005491 1.9e-07 60.8 39 76.9
TWI36G0771 Tripterygium wilfordii HOM05D004450 ORTHO05D005491 1.9e-07 60.8 34 85.3
CAN.G535.11 Capsicum annuum HOM05D004450 ORTHO05D005491 3.3e-07 60.1 37 81.1
Gohir.A06G039400 Gossypium hirsutum HOM05D004450 ORTHO05D005491 3.3e-07 60.1 38 81.6
Gohir.D06G038300 Gossypium hirsutum HOM05D004450 ORTHO05D005491 3.3e-07 60.1 38 81.6
Gohir.D06G040400 Gossypium hirsutum HOM05D004450 ORTHO05D005491 3.3e-07 60.1 38 81.6
Gorai.010G045100 Gossypium raimondii HOM05D004450 ORTHO05D005491 3.3e-07 60.1 38 81.6
Medtr3g073620 Medicago truncatula HOM05D004450 ORTHO05D005491 3.3e-07 60.1 35 85.7
Peaxi162Scf00168g00521 Petunia axillaris HOM05D004450 ORTHO05D005491 3.3e-07 60.1 37 81.1
Phvul.009G027200 Phaseolus vulgaris HOM05D004450 ORTHO05D005491 3.3e-07 60.1 35 82.9
Solyc04g072630.4 Solanum lycopersicum HOM05D004450 ORTHO05D005491 3.3e-07 60.1 37 81.1
Sopen04g028830 Solanum pennellii HOM05D004450 ORTHO05D005491 3.3e-07 60.1 37 81.1
TAR628G1211 Trochodendron aralioides HOM05D004450 ORTHO05D005491 3.3e-07 60.1 39 79.5
arahy.Tifrunner.gnm1.ann1.T35Q4E Arachis hypogaea HOM05D004450 ORTHO05D005491 4.3e-07 59.7 35 82.9
Oeu024568.7 Olea europaea HOM05D004450 ORTHO05D005491 4.3e-07 59.7 34 85.3
SalBow7G0866 Salvia bowleyana HOM05D004450 ORTHO05D005491 4.3e-07 59.7 43 69.8
Atru.chr13.1280 Acer truncatum HOM05D004450 ORTHO05D005491 5.6e-07 59.3 35 82.9
Lj4C711G4 Lonicera japonica HOM05D004450 ORTHO05D005491 5.6e-07 59.3 36 77.8
Lj1g0009455 Lotus japonicus HOM05D004450 ORTHO05D005491 5.6e-07 59.3 34 85.3
SGA_v2.0_scaffold48G18010 Striga asiatica HOM05D004450 ORTHO05D005491 7.3e-07 58.9 34 85.3
Manes.02G157000 Manihot esculenta HOM05D004450 ORTHO05D005491 9.5e-07 58.5 35 82.9
Nitab4.5_0002534g0010 Nicotiana tabacum HOM05D004450 ORTHO05D005491 9.5e-07 58.5 37 78.4
Aqoxy6G00526 Aquilegia oxysepala HOM05D004450 ORTHO05D005491 1.2e-06 58.2 39 74.4
Potri.002G091700 Populus trichocarpa HOM05D004450 ORTHO05D005491 1.2e-06 58.2 34 85.3
TPR.G28951 Trifolium pratense HOM05D004450 ORTHO05D005491 1.2e-06 58.2 34 85.3
Cpa.g.sc66.104 Carica papaya HOM05D004450 ORTHO05D005491 1.6e-06 57.8 34 85.3
Cc10_g05930 Coffea canephora HOM05D004450 ORTHO05D005491 1.6e-06 57.8 36 77.8
Nitab4.5_0004450g0020 Nicotiana tabacum HOM05D004450 ORTHO05D005491 2.1e-06 57.4 37 75.7
vmacro21221 Vaccinium macrocarpon HOM05D004450 ORTHO05D005491 2.1e-06 57.4 34 82.4
CSS0015865 Camellia sinensis var. sinensis HOM05D004450 ORTHO05D005491 3.6e-06 56.6 39 74.4
CSS0047020 Camellia sinensis var. sinensis HOM05D004450 ORTHO05D005491 3.6e-06 56.6 39 74.4
Lsat_1_v5_gn_9_43360 Lactuca sativa HOM05D004450 ORTHO05D005491 3.6e-06 56.6 39 71.8
ATR0564G059 Amborella trichopoda HOM05D004450 ORTHO05D005491 4.7e-06 56.2 34 79.4
DCAR_008706 Daucus carota HOM05D004450 ORTHO05D005491 4.7e-06 56.2 39 71.8
Lalb_Chr23g0270731 Lupinus albus HOM05D004450 ORTHO05D005491 6.2e-06 55.8 34 82.4
Lalb_Chr08g0241811 Lupinus albus HOM05D004450 ORTHO05D005491 8.1e-06 55.5 34 82.4


User provided reference genes

Program Settings