Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 6.1e-109 397.5 202 100.0
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 6.1e-109 397.5 202 100.0
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 6.1e-109 397.5 202 100.0
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 2.8e-106 388.7 202 97.5
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 2.8e-106 388.7 202 97.5
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.0e-95 353.6 203 89.2
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 9.4e-94 347.1 188 92.0
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.4e-92 343.2 207 87.9
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 6.8e-92 340.9 204 87.7
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 2.0e-91 339.3 205 86.3
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 2.0e-91 339.3 205 86.3
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 2.0e-91 339.3 205 86.3
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 2.6e-91 339.0 205 85.9
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.6e-91 339.0 205 87.8
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 3.4e-91 338.6 205 85.4
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 5.7e-91 337.8 205 85.9
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 2.7e-88 328.9 206 85.9
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 2.7e-88 328.9 206 85.9
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 2.7e-88 328.9 206 85.9
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 2.7e-88 328.9 207 84.1
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 3.5e-88 328.6 206 86.4
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 3.5e-88 328.6 206 86.4
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 1.3e-87 326.6 200 86.0
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 8.5e-87 323.9 202 86.1
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.2e-85 320.1 208 82.7
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.2e-53 211.5 209 59.3
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.2e-50 203.0 214 54.7
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 9.9e-43 177.6 209 51.2
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 1.4e-41 173.7 209 51.7
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.4e-41 173.7 211 53.1
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 2.1e-40 169.9 212 49.5
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.3e-39 167.2 199 48.2
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 6.6e-39 164.9 212 49.5
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 2.5e-38 162.9 223 49.3
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 7.3e-38 161.4 208 51.0
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.3e-37 160.6 205 47.8
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.6e-37 160.2 210 48.6
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.8e-37 159.5 207 49.3
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.8e-37 159.5 207 49.3
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 4.8e-37 158.7 170 57.6
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.1e-37 157.9 207 48.3
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.8e-36 156.8 181 49.2
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.4e-36 156.4 201 49.3
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 3.1e-36 156.0 234 44.9
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.1e-36 156.0 214 45.3
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 5.3e-36 155.2 227 46.3
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 9.0e-36 154.5 214 46.7
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 9.0e-36 154.5 203 45.8
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.2e-35 154.1 211 46.4
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.5e-35 153.7 196 47.4
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.5e-35 153.7 217 46.5
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.0e-35 153.3 196 47.4
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.0e-35 153.3 217 46.1
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 3.4e-35 152.5 196 47.4
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.4e-35 152.1 217 46.1
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 4.4e-35 152.1 232 41.8
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 5.8e-35 151.8 206 47.1
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.6e-35 151.4 196 46.4
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 9.9e-35 151.0 203 46.3
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.3e-34 150.6 195 47.2
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 3.8e-34 149.1 209 45.0
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 6.4e-34 148.3 216 44.0
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 1.1e-33 147.5 215 46.0
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 1.1e-33 147.5 198 45.5
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.9e-33 146.7 214 43.5
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.9e-33 146.7 209 45.5
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 3.2e-33 146.0 209 46.9
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 4.2e-33 145.6 199 46.7
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 4.2e-33 145.6 222 42.8
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 7.1e-33 144.8 208 45.7
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 7.1e-33 144.8 208 45.2
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.2e-32 144.1 209 44.5
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.2e-32 144.1 209 45.0
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.1e-32 143.3 193 47.2
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 2.7e-32 142.9 179 48.0
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 3.5e-32 142.5 201 45.3
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 3.5e-32 142.5 194 49.0
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 4.6e-32 142.1 213 44.6
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.0e-31 141.0 218 44.5
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.0e-31 141.0 217 44.7
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 1.3e-31 140.6 211 42.7
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 1.3e-31 140.6 211 42.7
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.3e-31 140.6 201 45.3
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.7e-31 140.2 207 46.4
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 6.6e-31 138.3 212 44.8
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 8.7e-31 137.9 208 41.8
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.9e-30 136.7 221 42.5
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.9e-30 136.7 221 42.1
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 3.3e-30 136.0 202 41.6
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 5.6e-30 135.2 212 43.4
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.1e-29 133.3 187 45.5
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 2.8e-29 132.9 223 43.5
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 3.6e-29 132.5 208 41.8
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 4.8e-29 132.1 228 43.0
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.1e-28 131.0 189 44.4
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.1e-28 131.0 222 42.3
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 3.1e-28 129.4 231 42.0
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 4.0e-28 129.0 220 40.0
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 6.9e-28 128.3 247 38.5
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 9.0e-28 127.9 219 40.2
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.2e-27 127.5 205 39.0
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 1.5e-27 127.1 208 42.3
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.6e-27 126.3 221 41.6
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 2.6e-27 126.3 185 42.7
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 3.4e-27 125.9 232 40.1
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 4.5e-27 125.6 206 40.8
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 5.8e-27 125.2 217 40.1
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 5.8e-27 125.2 206 42.2
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 7.6e-27 124.8 186 42.5
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 9.9e-27 124.4 218 41.3
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 9.9e-27 124.4 191 41.9
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.7e-26 123.6 203 41.4
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 1.7e-26 123.6 212 39.6
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.8e-26 122.5 182 44.0
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 4.9e-26 122.1 184 42.9
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.4e-26 121.7 183 38.8
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 9.3e-25 117.9 160 43.8
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 1.6e-24 117.1 223 38.1
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 2.1e-24 116.7 146 50.0
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.5e-24 115.9 179 45.3
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.6e-24 115.5 179 44.7
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 6.0e-24 115.2 192 42.7
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 6.0e-24 115.2 204 40.7
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 7.9e-24 114.8 211 37.4
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 3.0e-23 112.8 254 34.6
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 3.9e-23 112.5 199 42.2
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 8.7e-23 111.3 193 38.3
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.5e-22 110.5 197 37.6
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 2.5e-22 109.8 189 39.7
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.3e-22 109.4 189 38.1
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.6e-21 107.1 173 39.9
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 3.7e-21 105.9 236 39.8
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 1.1e-20 104.4 155 45.8
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 3.1e-20 102.8 239 36.0
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.9e-20 101.7 163 41.7
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 6.9e-20 101.7 178 35.4
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 1.2e-19 100.9 255 33.7
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.6e-19 99.8 163 40.5
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 1.0e-18 97.8 122 50.8
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 3.8e-18 95.9 210 37.1
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 3.8e-18 95.9 173 36.4
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 4.9e-18 95.5 195 34.4
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 2.5e-17 93.2 203 36.5
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 2.5e-17 93.2 203 36.5
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 3.2e-17 92.8 194 36.6
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 3.2e-17 92.8 213 37.6
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 5.5e-17 92.0 164 40.2
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 5.5e-17 92.0 164 40.2
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 7.1e-17 91.7 164 39.6
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 9.3e-17 91.3 176 40.3
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 2.1e-16 90.1 100 48.0
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 4.6e-16 89.0 200 33.5
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 8.7e-15 84.7 193 36.3
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.5e-14 84.0 164 39.0
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.5e-14 84.0 207 35.3
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.9e-14 83.6 102 52.9
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.5e-14 83.2 189 35.4
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 3.3e-14 82.8 193 33.7
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 4.3e-14 82.4 187 34.8
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.7e-14 82.0 199 35.7
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 1.6e-13 80.5 117 42.7
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 8.2e-13 78.2 176 34.1
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.0e-10 68.9 105 36.2
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 1.4e-09 67.4 168 33.3
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.9e-09 67.0 242 29.3
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 6.1e-08 62.0 192 28.6
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 1.3e-07 60.8 105 39.0
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 3.0e-07 59.7 93 41.9
Zm00001eb076410 Zea mays HOM05D004006 ORTHO05D004585 3.9e-07 59.3 75 49.3
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 1.9e-06 57.0 82 43.9


User provided reference genes

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