Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p21030 Brassica napus HOM05D007494 ORTHO05D009621 9.6e-144 513.5 256 100.0
C08p21040 Brassica napus HOM05D007494 ORTHO05D009621 7.1e-139 497.3 250 98.4
BolC8t49740H Brassica oleracea HOM05D007494 ORTHO05D009621 2.7e-138 495.4 250 98.0
BcaC07g39120 Brassica carinata HOM05D007494 ORTHO05D009621 8.5e-132 473.8 253 93.7
BolC8t49745H Brassica oleracea HOM05D007494 ORTHO05D009621 3.2e-131 471.9 250 94.8
BraA08t34811Z Brassica rapa HOM05D007494 ORTHO05D009621 6.9e-126 454.1 238 92.4
A08p28830 Brassica napus HOM05D007494 ORTHO05D009621 2.6e-125 452.2 238 92.0
BcaB03g11879 Brassica carinata HOM05D007494 ORTHO05D009621 3.1e-118 428.7 251 85.7
BcaB03g12780 Brassica carinata HOM05D007494 ORTHO05D009621 3.6e-114 415.2 257 83.7
AT1G20360 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.7e-69 266.2 252 60.7
AL1G33230 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 8.6e-68 261.2 263 57.4
AT1G20940 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.1e-65 254.2 268 55.2
Carub.0001s1977 Capsella rubella HOM05D007494 ORTHO05D009621 3.1e-65 252.7 249 57.4
AT1G20735 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 8.9e-65 251.1 257 57.2
AL1G45220 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 2.0e-64 250.0 258 55.0
BcaC07g39114 Brassica carinata HOM05D007494 ORTHO05D009621 6.4e-63 245.0 240 60.0
Carub.0001s2057 Capsella rubella HOM05D007494 ORTHO05D009621 2.1e-61 240.0 253 53.0
Carub.0004s0895 Capsella rubella HOM05D007494 ORTHO05D009621 4.7e-58 228.8 232 54.7
C08p21080 Brassica napus HOM05D007494 ORTHO05D009621 4.4e-56 222.2 117 94.0
BraA03t11134Z Brassica rapa HOM05D007494 ORTHO05D009621 4.4e-56 222.2 258 51.6
AT1G20240 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 7.6e-56 221.5 202 60.4
A03p18740 Brassica napus HOM05D007494 ORTHO05D009621 9.9e-56 221.1 258 51.2
AL1G33970 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 4.9e-55 218.8 259 49.8
Carub.0005s1178 Capsella rubella HOM05D007494 ORTHO05D009621 7.8e-53 211.5 239 51.9
Carub.0001s2024 Capsella rubella HOM05D007494 ORTHO05D009621 4.3e-51 205.7 251 45.4
AL1G33790 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 9.0e-49 198.0 251 48.6
BcaB01g00617 Brassica carinata HOM05D007494 ORTHO05D009621 2.3e-44 183.3 251 45.4
AL5G30530 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.9e-44 182.6 252 44.8
AT1G20795 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 3.9e-44 182.6 252 46.0
Sp1g18490 Schrenkiella parvula HOM05D007494 ORTHO05D009621 5.1e-44 182.2 260 45.0
AT1G20790 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.5e-43 180.6 259 45.6
Sp5g11780 Schrenkiella parvula HOM05D007494 ORTHO05D009621 1.1e-41 174.5 258 45.3
A08p29250 Brassica napus HOM05D007494 ORTHO05D009621 1.4e-41 174.1 258 43.0
Thhalv10012024m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.4e-41 174.1 253 43.9
Thhalv10009430m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.8e-41 173.7 259 42.1
BraA08t34860Z Brassica rapa HOM05D007494 ORTHO05D009621 4.0e-41 172.6 258 42.6
Aa31LG7G4950 Aethionema arabicum HOM05D007494 ORTHO05D009621 2.0e-40 170.2 258 43.0
C08p20370 Brassica napus HOM05D007494 ORTHO05D009621 1.3e-39 167.5 260 41.5
BolC8t49665H Brassica oleracea HOM05D007494 ORTHO05D009621 1.3e-39 167.5 260 41.5
AL1G33090 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 4.9e-39 165.6 199 52.8
BcaC07g39053 Brassica carinata HOM05D007494 ORTHO05D009621 1.9e-38 163.7 260 41.2
CARHR020740 Cardamine hirsuta HOM05D007494 ORTHO05D009621 1.9e-38 163.7 159 57.9
Thhalv10011090m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 7.1e-38 161.8 258 43.0
AL1G67140 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 2.7e-37 159.8 259 44.0
BcaB03g12853 Brassica carinata HOM05D007494 ORTHO05D009621 2.7e-37 159.8 258 40.3
C08p25440 Brassica napus HOM05D007494 ORTHO05D009621 6.0e-37 158.7 257 40.1
Thhalv10015953m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.0e-36 157.9 260 42.3
BcaB03g13899 Brassica carinata HOM05D007494 ORTHO05D009621 3.0e-36 156.4 258 40.3
BcaC07g39504 Brassica carinata HOM05D007494 ORTHO05D009621 3.0e-36 156.4 249 41.4
C08p25490 Brassica napus HOM05D007494 ORTHO05D009621 3.0e-36 156.4 249 41.4
AT1G57580 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.9e-35 153.7 255 40.0
BcaB02g08200 Brassica carinata HOM05D007494 ORTHO05D009621 2.5e-35 153.3 258 39.5
BcaC07g39499 Brassica carinata HOM05D007494 ORTHO05D009621 3.3e-35 152.9 249 39.8
BcaB07g30752 Brassica carinata HOM05D007494 ORTHO05D009621 1.3e-34 151.0 260 39.6
BraA09t39811Z Brassica rapa HOM05D007494 ORTHO05D009621 3.7e-34 149.4 244 41.4
A09p43410 Brassica napus HOM05D007494 ORTHO05D009621 4.8e-34 149.1 248 42.3
C08p25460 Brassica napus HOM05D007494 ORTHO05D009621 1.4e-33 147.5 252 40.9
Aa31LG8G15360 Aethionema arabicum HOM05D007494 ORTHO05D009621 2.4e-33 146.7 266 38.7
BraA09t39810Z Brassica rapa HOM05D007494 ORTHO05D009621 2.4e-33 146.7 248 42.3
THA.LOC104813281 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 3.1e-33 146.4 270 34.8
Aa31LG7G4960 Aethionema arabicum HOM05D007494 ORTHO05D009621 2.6e-32 143.3 259 36.3
THA.LOC104813247 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 2.6e-32 143.3 251 39.0
Aa31LG8G15370 Aethionema arabicum HOM05D007494 ORTHO05D009621 5.5e-30 135.6 260 36.9
BolC8t50169H Brassica oleracea HOM05D007494 ORTHO05D009621 5.6e-27 125.6 221 41.2
THA.LOC104813248 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 7.4e-27 125.2 242 36.0
BcaC07g39502 Brassica carinata HOM05D007494 ORTHO05D009621 4.0e-25 119.4 205 40.0
C08p25470 Brassica napus HOM05D007494 ORTHO05D009621 4.0e-25 119.4 205 40.0
BraA08t34812Z Brassica rapa HOM05D007494 ORTHO05D009621 1.2e-24 117.9 63 92.1
AT1G20690 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.7e-23 114.0 77 72.7
BolC8t50166H Brassica oleracea HOM05D007494 ORTHO05D009621 3.8e-23 112.8 253 33.2
BolC8t50168H Brassica oleracea HOM05D007494 ORTHO05D009621 6.5e-23 112.1 243 34.2
AL1G32830 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.9e-22 110.5 76 75.0
AT1G20800 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.3e-20 104.4 241 32.8
Carub.0001s2025 Capsella rubella HOM05D007494 ORTHO05D009621 3.7e-18 96.3 257 31.5
Thhalv10012172m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 4.1e-17 92.8 256 30.5
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 5.3e-17 92.4 247 34.4
Thhalv10012123m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.5e-16 90.9 197 34.0
Thhalv10012136m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.0e-15 88.2 214 32.2
Aa31LG8G15340 Aethionema arabicum HOM05D007494 ORTHO05D009621 2.9e-15 86.7 170 35.9
Sp1g18390 Schrenkiella parvula HOM05D007494 ORTHO05D009621 3.8e-15 86.3 45 86.7
BcaB03g12779 Brassica carinata HOM05D007494 ORTHO05D009621 3.6e-13 79.7 60 76.7
A09p43390 Brassica napus HOM05D007494 ORTHO05D009621 6.1e-13 79.0 101 42.6
BraA09t39808Z Brassica rapa HOM05D007494 ORTHO05D009621 1.0e-12 78.2 118 40.7
Thhalv10012236m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.1e-11 74.7 234 28.2
Thhalv10011940m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 4.3e-11 72.8 236 27.5
Potri.005G254633 Populus trichocarpa HOM05D000664 ORTHO05D010866 1.1e-09 68.2 271 29.2
Duzib041G0294 Durio zibethinus HOM05D007494 ORTHO05D009621 1.4e-09 67.8 249 27.7
Potri.005G254500 Populus trichocarpa HOM05D000664 ORTHO05D010866 4.1e-09 66.2 270 28.5
AL1G33800 Arabidopsis lyrata HOM05D013746 ORTHO05D015945 5.9e-08 62.4 45 66.7
arahy.Tifrunner.gnm1.ann1.XHBX5X Arachis hypogaea HOM05D002420 ORTHO05D002422 1.3e-07 61.2 240 27.9
BraA09t39809Z Brassica rapa HOM05D007494 ORTHO05D009621 1.3e-07 61.2 31 77.4
AT1G20803 Arabidopsis thaliana HOM05D013746 ORTHO05D015945 2.2e-07 60.5 42 66.7
Migut.N00063 Erythranthe guttata HOM05D000007 ORTHO05D000017 2.9e-07 60.1 263 24.3
DCAR_011704 Daucus carota HOM05D000007 ORTHO05D000017 3.8e-07 59.7 254 23.2
PSO339G5184 Papaver somniferum HOM05D000007 ORTHO05D000676 5.0e-07 59.3 262 24.4
CAN.G1631.9 Capsicum annuum HOM05D008697 ORTHO05D010866 6.5e-07 58.9 256 26.2
AT1G57565 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 8.5e-07 58.5 38 68.4
RcHm_v2.0_Chr4g0398061 Rosa chinensis HOM05D000664 ORTHO05D000491 1.1e-06 58.2 266 25.6
BcaC07g39500 Brassica carinata HOM05D007494 ORTHO05D009621 1.4e-06 57.8 33 78.8
RcHm_v2.0_Chr7g0226441 Rosa chinensis HOM05D000007 ORTHO05D000017 1.9e-06 57.4 273 24.5
PGSC0003DMG400015218 Solanum tuberosum HOM05D008697 ORTHO05D010923 3.2e-06 56.6 236 25.0
Thecc.09G282200 Theobroma cacao HOM05D002420 ORTHO05D002422 3.2e-06 56.6 246 25.6
FvH4_2g36701 Fragaria vesca HOM05D000007 ORTHO05D000017 5.5e-06 55.8 260 25.8
A08p29240 Brassica napus HOM05D013746 ORTHO05D015945 7.2e-06 55.5 41 61.0
BraA08t34859Z Brassica rapa HOM05D013746 ORTHO05D015945 7.2e-06 55.5 41 61.0
TAR626G1239 Trochodendron aralioides HOM05D000664 ORTHO05D000491 7.2e-06 55.5 255 25.1
A06p16790 Brassica napus HOM05D013746 ORTHO05D015945 9.4e-06 55.1 42 59.5
BraA06t24786Z Brassica rapa HOM05D013746 ORTHO05D015945 9.4e-06 55.1 42 59.5
Nitab4.5_0005200g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 9.4e-06 55.1 243 23.9


User provided reference genes

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