Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 1.2e-110 403.3 215 100.0
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 1.1e-108 396.7 221 97.3
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 5.3e-103 377.9 216 96.3
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 1.4e-98 363.2 217 93.5
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 2.4e-95 352.4 217 91.7
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 8.5e-93 344.0 219 87.7
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 1.6e-86 323.2 222 81.1
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 2.6e-86 322.4 222 81.1
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 5.9e-86 321.2 223 80.7
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 7.7e-86 320.9 216 83.3
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 2.2e-85 319.3 216 82.9
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 1.2e-83 313.5 222 81.1
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 1.6e-83 313.2 222 81.1
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 1.6e-83 313.2 222 81.1
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 2.1e-83 312.8 221 80.5
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 2.1e-83 312.8 224 81.7
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 4.0e-82 308.5 223 79.8
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 5.2e-82 308.1 223 81.2
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 9.8e-65 250.8 223 69.5
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 1.0e-58 230.7 218 60.6
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 2.5e-44 183.0 201 51.7
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 5.6e-44 181.8 207 51.2
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 7.3e-44 181.4 210 51.9
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 2.1e-43 179.9 215 50.2
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 2.1e-43 179.9 217 51.6
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 8.1e-43 177.9 217 50.2
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.4e-42 177.2 215 50.7
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 2.3e-42 176.4 197 53.8
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 4.0e-42 175.6 210 50.5
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 5.2e-42 175.3 218 47.7
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 5.8e-41 171.8 191 49.2
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 1.7e-40 170.2 213 51.6
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 1.7e-40 170.2 212 51.4
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 2.2e-40 169.9 203 50.7
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 2.2e-40 169.9 209 52.6
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 4.9e-40 168.7 215 49.8
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.4e-39 167.2 182 55.5
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 3.2e-39 166.0 212 47.6
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 4.1e-39 165.6 191 47.6
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 7.1e-39 164.9 191 50.8
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 9.2e-39 164.5 195 51.3
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 1.6e-38 163.7 209 49.3
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.1e-38 163.3 195 50.8
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 2.1e-38 163.3 192 50.0
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 2.1e-38 163.3 204 50.0
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 2.7e-38 162.9 212 50.9
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 6.0e-38 161.8 195 50.8
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 6.0e-38 161.8 208 49.0
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 1.0e-37 161.0 193 50.8
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.3e-37 160.6 215 47.4
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 1.3e-37 160.6 195 50.3
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 1.7e-37 160.2 208 46.6
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 3.9e-37 159.1 190 50.0
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 3.9e-37 159.1 215 45.1
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 6.6e-37 158.3 189 47.6
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 8.6e-37 157.9 207 44.9
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 1.1e-36 157.5 169 55.0
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 1.1e-36 157.5 215 47.4
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.9e-36 156.8 195 49.7
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 4.3e-36 155.6 197 48.2
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 5.6e-36 155.2 190 48.4
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 9.5e-36 154.5 201 44.8
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 9.5e-36 154.5 201 43.8
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 1.2e-35 154.1 214 43.9
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 1.6e-35 153.7 206 47.1
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 1.6e-35 153.7 191 47.1
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 2.1e-35 153.3 201 47.3
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 2.1e-35 153.3 219 46.6
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 2.8e-35 152.9 191 48.2
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 4.7e-35 152.1 188 47.3
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 4.7e-35 152.1 190 46.8
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 4.7e-35 152.1 197 46.2
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 6.2e-35 151.8 191 47.1
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 6.2e-35 151.8 205 48.3
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 8.1e-35 151.4 204 46.6
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 8.1e-35 151.4 217 44.2
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 1.1e-34 151.0 217 45.6
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.8e-34 150.2 204 46.1
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 2.3e-34 149.8 200 46.5
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 3.1e-34 149.4 189 45.5
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 4.0e-34 149.1 202 44.1
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 5.2e-34 148.7 196 47.4
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 5.2e-34 148.7 205 45.4
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 5.2e-34 148.7 205 45.4
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 5.2e-34 148.7 211 45.0
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 6.8e-34 148.3 190 47.4
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 6.8e-34 148.3 188 46.3
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 8.9e-34 147.9 210 48.6
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 1.2e-33 147.5 202 45.0
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 1.5e-33 147.1 207 45.9
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 4.4e-33 145.6 189 46.6
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 9.9e-33 144.4 203 43.3
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 9.9e-33 144.4 264 40.9
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 9.9e-33 144.4 212 42.5
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 9.9e-33 144.4 201 42.3
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 3.8e-32 142.5 227 42.7
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 4.9e-32 142.1 205 43.4
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 6.4e-32 141.7 213 42.7
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 1.1e-31 141.0 161 55.3
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 4.1e-31 139.0 184 47.8
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 1.2e-30 137.5 203 42.9
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 1.6e-30 137.1 218 39.0
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 4.6e-30 135.6 213 39.9
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 6.0e-30 135.2 217 44.7
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 2.3e-29 133.3 182 47.3
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 1.1e-28 131.0 197 45.2
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 2.5e-28 129.8 219 43.8
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 2.6e-25 119.8 165 44.8
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 1.1e-23 114.4 256 37.5
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 1.3e-21 107.5 141 45.4
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.1e-18 97.8 184 39.1
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 6.9e-18 95.1 105 46.7
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.5e-17 92.4 99 50.5
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 5.8e-17 92.0 121 44.6
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 2.9e-16 89.7 304 28.3
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 1.4e-15 87.4 204 33.8
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 5.4e-15 85.5 73 63.0
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 1.0e-13 81.3 210 31.9
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 5.6e-12 75.5 86 48.8
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 6.9e-10 68.6 217 28.6
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 6.9e-10 68.6 150 33.3
CBR_g41721 Chara braunii HOM05D006240 ORTHO05D007709 8.4e-08 61.6 204 29.9
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 3.2e-07 59.7 55 54.5


User provided reference genes

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