Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p19780 Brassica napus HOM05D004047 ORTHO05D004772 0.0e+00 1318.5 744 100.0
BcaC07g39006 Brassica carinata HOM05D004047 ORTHO05D004772 0.0e+00 1295.0 732 99.7
BolC8t49616H Brassica oleracea HOM05D004047 ORTHO05D004772 0.0e+00 1274.6 732 98.4
A08p29630 Brassica napus HOM05D004047 ORTHO05D004772 0.0e+00 1128.6 745 87.8
BcaB03g12894 Brassica carinata HOM05D004047 ORTHO05D004772 4.0e-275 951.4 739 80.1
Thhalv10006839m.g Eutrema salsugineum HOM05D004047 ORTHO05D004772 1.6e-268 929.5 797 74.3
A06p16070 Brassica napus HOM05D004047 ORTHO05D004772 1.0e-262 910.2 768 75.7
BraA06t24713Z Brassica rapa HOM05D004047 ORTHO05D004772 3.9e-262 908.3 767 75.5
Sp1g17670 Schrenkiella parvula HOM05D004047 ORTHO05D004772 9.6e-261 903.7 784 74.1
BcaB07g32005 Brassica carinata HOM05D004047 ORTHO05D004772 2.3e-254 882.5 770 73.6
AL1G32600 Arabidopsis lyrata HOM05D004047 ORTHO05D004772 1.5e-250 869.8 796 70.7
BcaC05g25881 Brassica carinata HOM05D004047 ORTHO05D004772 5.5e-248 861.3 765 71.5
C05p18380 Brassica napus HOM05D004047 ORTHO05D004772 5.5e-248 861.3 765 71.5
BolC5t30548H Brassica oleracea HOM05D004047 ORTHO05D004772 5.5e-248 861.3 765 71.5
CARHR020370 Cardamine hirsuta HOM05D004047 ORTHO05D004772 1.2e-231 807.0 789 66.0
AT1G19870 Arabidopsis thaliana HOM05D004047 ORTHO05D004772 2.6e-226 789.3 797 66.2
Carub.0001s1939 Capsella rubella HOM05D004047 ORTHO05D004772 2.5e-216 756.1 792 65.5
Aa31LG7G4370 Aethionema arabicum HOM05D004047 ORTHO05D003043 3.4e-197 692.6 810 60.0
THA.LOC104813799 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 5.5e-139 499.2 801 50.1
THA.LOC104811392 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 4.8e-127 459.5 807 47.2
Atru.chr13.329 Acer truncatum HOM05D004047 ORTHO05D004772 2.5e-83 314.3 847 37.5
Manes.18G016100 Manihot esculenta HOM05D004047 ORTHO05D004772 9.5e-83 312.4 847 37.0
Ciclev10000295m.g Citrus clementina HOM05D004047 ORTHO05D004772 2.6e-80 304.3 841 37.5
Potri.002G025200 Populus trichocarpa HOM05D004047 ORTHO05D004772 3.2e-78 297.4 848 37.5
Actinidia15402 Actinidia chinensis HOM05D004047 ORTHO05D004772 1.5e-75 288.5 850 36.1
Potri.005G236200 Populus trichocarpa HOM05D004047 ORTHO05D004772 1.9e-75 288.1 839 36.4
Cpa.g.sc26.21 Carica papaya HOM05D004047 ORTHO05D004772 1.2e-72 278.9 939 34.4
Cfa013920 Carpinus fangiana HOM05D004047 ORTHO05D004772 9.8e-72 275.8 844 33.9
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 1.7e-71 275.0 886 35.7
Dinv31823 Davidia involucrata HOM05D004047 ORTHO05D004772 3.7e-71 273.9 886 33.4
Duzib116G0032 Durio zibethinus HOM05D004047 ORTHO05D004772 4.1e-70 270.4 840 35.2
PGR083G1283 Punica granatum HOM05D004047 ORTHO05D004772 4.6e-69 266.9 851 33.4
TAR381G0884 Trochodendron aralioides HOM05D004047 ORTHO05D004772 6.0e-69 266.5 848 35.0
TWI12G0119 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 7.8e-69 266.2 843 35.8
Haze_22603 Corylus avellana HOM05D004047 ORTHO05D004772 1.7e-68 265.0 854 33.5
RcHm_v2.0_Chr6g0302451 Rosa chinensis HOM05D004047 ORTHO05D004772 6.6e-68 263.1 829 35.1
Aqoxy6G02326 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 8.6e-68 262.7 866 33.4
Duzib093G0674 Durio zibethinus HOM05D004047 ORTHO05D004772 7.3e-67 259.6 844 34.5
Gorai.002G124800 Gossypium raimondii HOM05D004047 ORTHO05D004772 9.5e-67 259.2 854 34.5
arahy.Tifrunner.gnm1.ann1.261ZZU Arachis hypogaea HOM05D004047 ORTHO05D004772 4.7e-66 256.9 836 34.1
arahy.Tifrunner.gnm1.ann1.GHU3Y0 Arachis hypogaea HOM05D004047 ORTHO05D004772 8.1e-66 256.1 837 34.2
Gohir.D01G099500 Gossypium hirsutum HOM05D004047 ORTHO05D004772 8.1e-66 256.1 855 34.5
Gohir.A01G112700 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.1e-65 255.8 847 34.4
Eucgr.F01629 Eucalyptus grandis HOM05D004047 ORTHO05D004772 1.4e-65 255.4 858 34.8
Migut.C00820 Erythranthe guttata HOM05D004047 ORTHO05D004772 3.1e-65 254.2 806 34.5
Gorai.010G005800 Gossypium raimondii HOM05D004047 ORTHO05D004772 5.2e-65 253.4 765 34.2
Nn5g29267 Nelumbo nucifera HOM05D004047 ORTHO05D004772 5.2e-65 253.4 855 33.3
Psat6g004160 Pisum sativum HOM05D004047 ORTHO05D004772 5.2e-65 253.4 830 34.8
CSS0029692 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 8.9e-65 252.7 835 34.5
Nn6g32284 Nelumbo nucifera HOM05D004047 ORTHO05D004772 8.9e-65 252.7 850 34.5
Actinidia16963 Actinidia chinensis HOM05D004047 ORTHO05D004772 1.5e-64 251.9 833 34.0
Prupe.1G369000 Prunus persica HOM05D004047 ORTHO05D004772 2.6e-64 251.1 838 34.1
Sabra05G0182600 Salix brachista HOM05D004047 ORTHO05D004772 2.6e-64 251.1 837 33.1
FvH4_2g38820 Fragaria vesca HOM05D004047 ORTHO05D004772 7.5e-64 249.6 837 34.1
Gohir.A06G005600 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.3e-63 248.8 747 34.8
Medtr1g023760 Medicago truncatula HOM05D004047 ORTHO05D004772 1.3e-63 248.8 835 36.0
Gohir.D06G001400 Gossypium hirsutum HOM05D004047 ORTHO05D004772 2.2e-63 248.1 748 34.6
HanXRQChr04g0101151 Helianthus annuus HOM05D004047 ORTHO05D004772 1.9e-62 245.0 762 34.8
TWI56G0272 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 1.9e-62 245.0 849 34.6
FAN15G3510 Fragaria x ananassa HOM05D004047 ORTHO05D004772 3.2e-62 244.2 831 33.2
Nitab4.5_0005185g0030 Nicotiana tabacum HOM05D004047 ORTHO05D004772 5.4e-62 243.4 888 33.0
Peaxi162Scf00287g01716 Petunia axillaris HOM05D004047 ORTHO05D004772 9.2e-62 242.7 869 32.6
FAN20G0280 Fragaria x ananassa HOM05D004047 ORTHO05D004772 2.1e-61 241.5 838 33.1
FAN27G1251 Fragaria x ananassa HOM05D004047 ORTHO05D004772 2.1e-61 241.5 835 33.2
QL02p010984 Quercus lobata HOM05D004047 ORTHO05D004772 2.7e-61 241.1 857 33.3
PGSC0003DMG400003722 Solanum tuberosum HOM05D004047 ORTHO05D004772 2.7e-61 241.1 888 33.3
Lj5g0017583 Lotus japonicus HOM05D004047 ORTHO05D004772 3.5e-61 240.7 839 34.3
DCAR_022438 Daucus carota HOM05D004047 ORTHO05D004772 6.0e-61 240.0 828 33.7
Glyma.06G025800 Glycine max HOM05D004047 ORTHO05D004772 7.8e-61 239.6 889 34.4
Hma1.2p1_2476F.1_g322840 Hydrangea macrophylla HOM05D004047 ORTHO05D004772 7.8e-61 239.6 791 32.5
CANSAT25G0097 Cannabis sativa HOM05D004047 ORTHO05D004772 1.0e-60 239.2 906 32.8
SGA_v2.0_scaffold92G28267 Striga asiatica HOM05D004047 ORTHO05D004772 3.0e-60 237.7 790 33.3
Sc02g0008420 Simmondsia chinensis HOM05D004047 ORTHO05D004772 3.9e-60 237.3 828 33.2
Oeu054711.1 Olea europaea HOM05D004047 ORTHO05D004772 5.1e-60 236.9 849 33.0
Duzib041G0005 Durio zibethinus HOM05D004047 ORTHO05D004772 1.1e-59 235.7 839 34.2
Sopen04g034820 Solanum pennellii HOM05D004047 ORTHO05D004772 1.1e-59 235.7 868 32.6
Solyc04g081210.4 Solanum lycopersicum HOM05D004047 ORTHO05D004772 1.5e-59 235.3 863 32.7
arahy.Tifrunner.gnm1.ann1.7CTW4M Arachis hypogaea HOM05D004047 ORTHO05D004772 1.9e-59 235.0 795 33.0
DCAR_009937 Daucus carota HOM05D004047 ORTHO05D004772 2.1e-58 231.5 804 32.8
Cc10_g01950 Coffea canephora HOM05D004047 ORTHO05D004772 3.6e-58 230.7 848 31.4
EL10Ac1g02250 Beta vulgaris HOM05D004047 ORTHO05D004772 4.7e-58 230.3 890 31.5
MD15G1014800 Malus domestica HOM05D004047 ORTHO05D004772 4.7e-58 230.3 773 33.6
arahy.Tifrunner.gnm1.ann1.D2JYDS Arachis hypogaea HOM05D004047 ORTHO05D004772 6.2e-58 229.9 796 32.3
Phvul.009G015200 Phaseolus vulgaris HOM05D004047 ORTHO05D004772 1.8e-57 228.4 871 33.3
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 2.3e-57 228.0 873 32.4
VMungo1309G2404 Vigna mungo HOM05D004047 ORTHO05D004772 4.0e-57 227.3 870 34.0
Lalb_Chr11g0062011 Lupinus albus HOM05D004047 ORTHO05D004772 5.2e-57 226.9 825 32.7
Peaxi162Scf00186g00119 Petunia axillaris HOM05D004047 ORTHO05D004772 5.2e-57 226.9 783 33.3
CAN.G1271.11 Capsicum annuum HOM05D004047 ORTHO05D004772 6.8e-57 226.5 872 32.3
Gohir.A05G188000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 2.0e-56 224.9 924 31.8
Rhsim07G0245700 Rhododendron simsii HOM05D004047 ORTHO05D004772 3.4e-56 224.2 860 31.4
Gorai.009G196200 Gossypium raimondii HOM05D004047 ORTHO05D004772 4.4e-56 223.8 924 31.9
SalBow7G0720 Salvia bowleyana HOM05D004047 ORTHO05D004772 9.9e-56 222.6 635 34.6
MSTRG.25224 Avicennia marina HOM05D004047 ORTHO05D004772 2.2e-55 221.5 838 33.7
Lalb_Chr14g0369751 Lupinus albus HOM05D004047 ORTHO05D004772 2.9e-55 221.1 851 33.4
MBI05_g26515_MAGBIO Magnolia biondii HOM05D004047 ORTHO05D004772 2.9e-55 221.1 874 31.6
Gohir.D05G191000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 4.9e-55 220.3 924 31.9
Lj4A794G38 Lonicera japonica HOM05D004047 ORTHO05D004772 2.4e-54 218.0 776 32.6
PSO541G1521 Papaver somniferum HOM05D004047 ORTHO05D004772 3.2e-54 217.6 831 31.9
PSO675G6151 Papaver somniferum HOM05D004047 ORTHO05D004772 4.1e-54 217.2 835 32.0
CsaV3_3G045640 Cucumis sativus L. HOM05D004047 ORTHO05D004772 4.6e-53 213.8 845 31.7
SGA_v2.0_scaffold11G05888 Striga asiatica HOM05D004047 ORTHO05D004772 6.0e-53 213.4 818 31.5
CiPaw.08G064100 Carya illinoinensis HOM05D004047 ORTHO05D004772 1.3e-52 212.2 649 35.9
Ca_13402_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 1.7e-52 211.8 829 33.4
Ca_13415_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 1.7e-52 211.8 829 33.4
Ca_29786_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 1.7e-52 211.8 829 33.4
Sed0024056 Sechium edule HOM05D004047 ORTHO05D004772 3.0e-52 211.1 859 31.8
Nitab4.5_0001242g0060 Nicotiana tabacum HOM05D004047 ORTHO05D004772 3.3e-51 207.6 815 31.7
Ah.11g039490 Amaranthus hybridus HOM05D004047 ORTHO05D004772 5.6e-51 206.8 849 33.1
Lalb_Chr08g0246131 Lupinus albus HOM05D004047 ORTHO05D004772 7.3e-51 206.5 830 31.6
CsaV3_2G029380 Cucumis sativus L. HOM05D004047 ORTHO05D004772 1.2e-50 205.7 869 30.7
MELO3C010997.2 Cucumis melo HOM05D004047 ORTHO05D004772 1.6e-50 205.3 870 30.0
Nitab4.5_0005489g0020 Nicotiana tabacum HOM05D004047 ORTHO05D004772 2.1e-50 204.9 778 32.4
Thecc.08G040700 Theobroma cacao HOM05D004047 ORTHO05D004772 2.1e-50 204.9 604 36.6
Lsat_1_v5_gn_8_31420 Lactuca sativa HOM05D004047 ORTHO05D004772 6.2e-50 203.4 791 31.5
TAR376G1182 Trochodendron aralioides HOM05D004047 ORTHO05D004772 6.2e-50 203.4 975 30.6
ECA238G1430 Erigeron canadensis HOM05D004047 ORTHO05D004772 6.8e-49 199.9 646 34.2
Hund05219 Selenicereus undatus HOM05D004047 ORTHO05D004772 1.5e-48 198.7 952 31.6
Aqoxy5G01461 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 3.4e-48 197.6 858 30.3
ClCG05G018530 Citrullus lanatus HOM05D004047 ORTHO05D004772 7.6e-48 196.4 836 31.6
AUR62035714 Chenopodium quinoa HOM05D004047 ORTHO05D004772 4.9e-47 193.7 984 29.0
HanXRQChr14g0431291 Helianthus annuus HOM05D004047 ORTHO05D004772 1.4e-46 192.2 758 31.8
CDE02G3574 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 5.1e-44 183.7 811 29.6
CSS0011131 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 8.7e-44 183.0 939 28.4
MD08G1015800 Malus domestica HOM05D004047 ORTHO05D004772 1.1e-43 182.6 774 30.2
HanXRQChr13g0387331 Helianthus annuus HOM05D004047 ORTHO05D004772 4.3e-43 180.6 887 30.3
AUR62035431 Chenopodium quinoa HOM05D004047 ORTHO05D004772 1.3e-42 179.1 711 33.3
HanXRQChr12g0367641 Helianthus annuus HOM05D004047 ORTHO05D004772 4.8e-42 177.2 862 29.0
ECA233G3940 Erigeron canadensis HOM05D004047 ORTHO05D004772 1.4e-41 175.6 897 28.2
SalBow8G2734 Salvia bowleyana HOM05D004047 ORTHO05D004772 1.4e-41 175.6 829 30.9
Sed0015722 Sechium edule HOM05D004047 ORTHO05D004772 2.4e-41 174.9 849 30.2
PSO170G4872 Papaver somniferum HOM05D004047 ORTHO05D004772 1.2e-40 172.6 774 30.2
Dinv39496 Davidia involucrata HOM05D004047 ORTHO05D004772 2.2e-39 168.3 587 32.0
PSO210G3933 Papaver somniferum HOM05D004047 ORTHO05D004772 3.8e-39 167.5 981 27.6
Lj4C28G12 Lonicera japonica HOM05D004047 ORTHO05D003043 3.2e-38 164.5 670 30.9
Oeu027553.1 Olea europaea HOM05D004047 ORTHO05D004772 1.7e-36 158.7 741 29.7
Lsat_1_v5_gn_2_11701 Lactuca sativa HOM05D004047 ORTHO05D004772 2.3e-36 158.3 760 30.0
CDE04G1192 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 1.1e-35 156.0 790 26.7
GSVIVG01009858001 Vitis vinifera HOM05D004047 ORTHO05D004772 2.5e-35 154.8 501 34.1
TPR.G34366 Trifolium pratense HOM05D004047 ORTHO05D004772 9.6e-35 152.9 757 29.9
vmacro04336 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 4.0e-33 147.5 718 29.0
SHI08087 Sapria himalayana HOM05D004047 ORTHO05D004772 9.9e-32 142.9 745 31.9
Os04g0663100 Oryza sativa ssp. japonica HOM05D004047 ORTHO05D004772 2.9e-31 141.4 679 30.0
unitig_8.g4918 Utricularia gibba HOM05D004047 ORTHO05D004772 4.9e-31 140.6 785 29.6
Actinidia29790 Actinidia chinensis HOM05D004047 ORTHO05D004772 9.3e-30 136.3 582 30.4
Zm00001eb067350 Zea mays HOM05D004047 ORTHO05D004772 2.1e-29 135.2 632 29.9
Glyma.04G026000 Glycine max HOM05D004047 ORTHO05D004772 3.0e-28 131.3 715 29.1
Sed0015788 Sechium edule HOM05D004047 ORTHO05D004772 3.0e-28 131.3 1005 26.1
Zm00001eb432990 Zea mays HOM05D004047 ORTHO05D004772 5.1e-28 130.6 636 29.9
HPP92_001560 Vanilla planifolia HOM05D004047 ORTHO05D004772 1.9e-27 128.6 846 27.9
Lj1g0015956 Lotus japonicus HOM05D004047 ORTHO05D004772 1.3e-26 125.9 765 27.6
MELO3C003773.2 Cucumis melo HOM05D004047 ORTHO05D004772 6.2e-26 123.6 449 35.4
Oeu007049.1 Olea europaea HOM05D004047 ORTHO05D004772 1.3e-20 105.9 1097 23.8
ATR0147G010 Amborella trichopoda HOM05D004047 ORTHO05D004772 3.9e-20 104.4 568 28.0
Dinv39497 Davidia involucrata HOM05D004047 ORTHO05D004772 8.7e-20 103.2 178 47.8
Lsat_1_v5_gn_8_51360 Lactuca sativa HOM05D004047 ORTHO05D004772 9.6e-19 99.8 305 33.8
unitig_578.g16088 Utricularia gibba HOM05D004047 ORTHO05D004772 3.8e-15 87.8 615 28.8
THA.LOC104806899 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 1.4e-14 85.9 765 26.5
Actinidia37973 Actinidia chinensis HOM05D004047 ORTHO05D004772 7.2e-14 83.6 569 27.8
ATR0952G001 Amborella trichopoda HOM05D004047 ORTHO05D004772 2.2e-10 72.0 230 34.8
Migut.N03142 Erythranthe guttata HOM05D004047 ORTHO05D004772 2.2e-10 72.0 726 26.7
HPP92_020925 Vanilla planifolia HOM05D004047 ORTHO05D004772 4.8e-10 70.9 557 23.9
Hma1.2p1_2815F.1_g328920 Hydrangea macrophylla HOM05D002126 ORTHO05D002195 1.4e-09 69.3 150 30.0
CANSAT64G2703 Cannabis sativa HOM05D002126 ORTHO05D002195 3.1e-09 68.2 156 31.4
CANSAT64G2301 Cannabis sativa HOM05D002126 ORTHO05D002195 4.1e-09 67.8 156 31.4
Ah.10g032990 Amaranthus hybridus HOM05D000156 ORTHO05D001430 7.7e-08 63.5 138 31.2
unitig_578.g16089 Utricularia gibba HOM05D004047 ORTHO05D004772 2.2e-07 62.0 57 59.6
vmacro04323 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 2.9e-07 61.6 239 27.2
QL02p080915 Quercus lobata HOM05D002126 ORTHO05D002195 5.0e-07 60.8 572 23.6
PGR119G0400 Punica granatum HOM05D002126 ORTHO05D002195 6.5e-07 60.5 404 23.3
MSTRG.3224 Avicennia marina HOM05D002126 ORTHO05D002195 8.5e-07 60.1 541 24.6
MSTRG.3320 Avicennia marina HOM05D002126 ORTHO05D002195 1.1e-06 59.7 605 22.6
DCAR_011147 Daucus carota HOM05D002126 ORTHO05D002195 1.1e-06 59.7 134 32.1
Gohir.A13G072200 Gossypium hirsutum HOM05D002126 ORTHO05D002195 1.4e-06 59.3 419 25.8
SGA_v2.0_scaffold205G41767 Striga asiatica HOM05D002126 ORTHO05D002195 1.4e-06 59.3 263 24.7
COL.COLO4_23031 Corchorus olitorius HOM05D002126 ORTHO05D002195 1.9e-06 58.9 166 28.3
Dinv34213 Davidia involucrata HOM05D002126 ORTHO05D002195 1.9e-06 58.9 180 28.9
Oeu060926.1 Olea europaea HOM05D002126 ORTHO05D002195 1.9e-06 58.9 195 30.8
Glyma.12G189900 Glycine max HOM05D000156 ORTHO05D001290 3.2e-06 58.2 164 31.1
Eucgr.J00581 Eucalyptus grandis HOM05D000156 ORTHO05D001290 4.2e-06 57.8 146 28.1


User provided reference genes

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