Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p19630 Brassica napus HOM05D015260 ORTHO05D003858 1.9e-118 429.1 208 100.0
C08p16700 Brassica napus HOM05D015260 ORTHO05D003858 2.5e-97 359.0 208 84.1
C08p16290 Brassica napus HOM05D015260 ORTHO05D003858 2.0e-94 349.4 208 82.2
BcaB03g13129 Brassica carinata HOM05D015260 ORTHO05D003858 4.8e-85 318.2 210 71.4
BraA08t35148Z Brassica rapa HOM05D015260 ORTHO05D003858 7.2e-81 304.3 178 81.5
A08p32250 Brassica napus HOM05D015260 ORTHO05D003858 1.2e-78 297.0 173 82.1
BcaC07g38700 Brassica carinata HOM05D015260 ORTHO05D003858 2.0e-78 296.2 176 81.2
BolC8t49252H Brassica oleracea HOM05D015260 ORTHO05D003858 1.2e-75 287.0 173 80.3
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 4.0e-23 112.5 184 35.9
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 6.0e-19 98.6 195 33.8
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 8.7e-18 94.7 233 28.8
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 3.3e-17 92.8 189 30.7
AL7G35920 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 1.4e-15 87.4 211 28.4
AL1G36880 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 1.8e-15 87.0 197 30.5
Carub.0006s0105 Capsella rubella HOM05D003879 ORTHO05D003858 5.3e-15 85.5 194 33.5
AL1G37000 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 1.5e-14 84.0 184 29.3
AL1G36940 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 2.6e-14 83.2 192 28.1
CARHR014430 Cardamine hirsuta HOM05D003879 ORTHO05D003858 2.6e-14 83.2 168 30.4
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 9.9e-14 81.3 216 25.9
AT1G23201 Arabidopsis thaliana HOM05D014944 ORTHO05D017385 9.9e-14 81.3 195 28.7
AL1G30590 Arabidopsis lyrata HOM05D014411 ORTHO05D015382 1.3e-13 80.9 115 43.5
AL1G30600 Arabidopsis lyrata HOM05D013370 ORTHO05D016580 4.2e-12 75.9 91 47.3
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 3.5e-11 72.8 78 41.0
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 4.6e-11 72.4 69 49.3
BcaC07g39829 Brassica carinata HOM05D011464 ORTHO05D014025 6.0e-11 72.0 134 32.8
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 6.0e-11 72.0 158 30.4
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 6.0e-11 72.0 82 43.9
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.0e-10 71.2 77 42.9
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 1.3e-10 70.9 57 54.4
BolC8t50653H Brassica oleracea HOM05D011464 ORTHO05D014025 1.8e-10 70.5 133 32.3
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 1.8e-10 70.5 92 41.3
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 2.3e-10 70.1 69 47.8
BolC8t50643H Brassica oleracea HOM05D011464 ORTHO05D014025 2.3e-10 70.1 133 32.3
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 2.3e-10 70.1 74 44.6
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 3.0e-10 69.7 113 36.3
BolC8t50649H Brassica oleracea HOM05D011464 ORTHO05D014025 3.9e-10 69.3 133 33.1
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 3.9e-10 69.3 68 48.5
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 3.9e-10 69.3 82 40.2
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 5.1e-10 68.9 96 40.6
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 5.1e-10 68.9 96 40.6
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 6.7e-10 68.6 89 40.4
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 8.7e-10 68.2 88 38.6
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 8.7e-10 68.2 57 54.4
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 1.1e-09 67.8 63 47.6
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 1.1e-09 67.8 71 40.8
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 1.5e-09 67.4 64 50.0
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 1.9e-09 67.0 113 36.3
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.9e-09 67.0 113 36.3
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 1.9e-09 67.0 57 52.6
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.5e-09 66.6 57 49.1
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 3.3e-09 66.2 70 47.1
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 3.3e-09 66.2 70 47.1
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 3.3e-09 66.2 70 47.1
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 3.3e-09 66.2 73 42.5
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 3.3e-09 66.2 66 45.5
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 4.3e-09 65.9 96 36.5
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 4.3e-09 65.9 73 45.2
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 4.3e-09 65.9 71 43.7
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 4.3e-09 65.9 72 45.8
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 5.6e-09 65.5 57 54.4
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 7.4e-09 65.1 70 44.3
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 7.4e-09 65.1 63 47.6
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 7.4e-09 65.1 115 34.8
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 7.4e-09 65.1 71 45.1
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 7.4e-09 65.1 57 50.9
AL7G35910 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 9.6e-09 64.7 123 30.1
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 9.6e-09 64.7 90 43.3
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 9.6e-09 64.7 96 35.4
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 9.6e-09 64.7 86 38.4
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 9.6e-09 64.7 72 40.3
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 9.6e-09 64.7 72 40.3
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 9.6e-09 64.7 73 45.2
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-08 64.3 77 44.2
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-08 64.3 77 44.2
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-08 64.3 77 44.2
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-08 64.3 77 44.2
CARHR018730 Cardamine hirsuta HOM05D013370 ORTHO05D015382 1.3e-08 64.3 96 38.5
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.3e-08 64.3 63 47.6
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 1.3e-08 64.3 63 47.6
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 1.3e-08 64.3 72 40.3
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 1.3e-08 64.3 57 49.1
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 1.3e-08 64.3 71 43.7
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 1.6e-08 63.9 93 35.5
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 2.1e-08 63.5 77 44.2
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 2.1e-08 63.5 57 49.1
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 2.1e-08 63.5 57 47.4
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 2.1e-08 63.5 78 39.7
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 2.1e-08 63.5 73 47.9
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 2.8e-08 63.2 73 45.2
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 2.8e-08 63.2 73 45.2
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 2.8e-08 63.2 65 46.2
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 2.8e-08 63.2 78 39.7
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.8e-08 63.2 57 50.9
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 2.8e-08 63.2 72 41.7
BcaB04g19402 Brassica carinata HOM05D011464 ORTHO05D014025 3.7e-08 62.8 120 30.8
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 3.7e-08 62.8 68 42.6
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 3.7e-08 62.8 86 38.4
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 3.7e-08 62.8 58 48.3
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 3.7e-08 62.8 57 45.6
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 3.7e-08 62.8 64 45.3
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 3.7e-08 62.8 72 41.7
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 3.7e-08 62.8 84 39.3
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 3.7e-08 62.8 103 34.0
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 3.7e-08 62.8 63 46.0
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 4.8e-08 62.4 72 40.3
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 4.8e-08 62.4 73 43.8
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 4.8e-08 62.4 57 50.9
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 4.8e-08 62.4 72 41.7
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 4.8e-08 62.4 80 37.5
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 6.2e-08 62.0 81 42.0
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 6.2e-08 62.0 77 33.8
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 6.2e-08 62.0 70 44.3
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 6.2e-08 62.0 59 42.4
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 6.2e-08 62.0 65 46.2
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 8.1e-08 61.6 74 39.2
C05p14670 Brassica napus HOM05D013370 ORTHO05D016580 8.1e-08 61.6 138 34.8
BraA06t24403Z Brassica rapa HOM05D013370 ORTHO05D016580 8.1e-08 61.6 135 34.8
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 8.1e-08 61.6 98 35.7
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 1.1e-07 61.2 63 44.4
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 1.1e-07 61.2 63 44.4
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 1.1e-07 61.2 99 36.4
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 1.1e-07 61.2 67 41.8
A06p12400 Brassica napus HOM05D013370 ORTHO05D016580 1.1e-07 61.2 135 34.8
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.4e-07 60.8 81 40.7
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 1.4e-07 60.8 94 37.2
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 1.4e-07 60.8 57 49.1
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 1.4e-07 60.8 63 47.6
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 1.4e-07 60.8 64 45.3
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 1.4e-07 60.8 63 42.9
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 1.8e-07 60.5 95 32.6
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 2.4e-07 60.1 72 40.3
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 2.4e-07 60.1 72 36.1
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 2.4e-07 60.1 64 45.3
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 2.4e-07 60.1 72 41.7
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 3.1e-07 59.7 85 44.7
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 3.1e-07 59.7 80 41.2
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 4.0e-07 59.3 72 41.7
BcaC05g25568 Brassica carinata HOM05D013370 ORTHO05D016580 4.0e-07 59.3 103 37.9
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 4.0e-07 59.3 72 38.9
BcaC07g41566 Brassica carinata HOM05D011464 ORTHO05D014025 5.3e-07 58.9 157 29.3
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 5.3e-07 58.9 57 47.4
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 5.3e-07 58.9 88 36.4
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 5.3e-07 58.9 57 47.4
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 5.3e-07 58.9 58 43.1
AL1G25910 Arabidopsis lyrata HOM05D011464 ORTHO05D003858 6.9e-07 58.5 81 42.0
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 6.9e-07 58.5 90 34.4
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 6.9e-07 58.5 77 37.7
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 6.9e-07 58.5 87 36.8
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 6.9e-07 58.5 57 45.6
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 6.9e-07 58.5 55 49.1
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 6.9e-07 58.5 97 34.0
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 9.0e-07 58.2 90 34.4
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 9.0e-07 58.2 100 34.0
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 9.0e-07 58.2 72 36.1
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 9.0e-07 58.2 55 47.3
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 9.0e-07 58.2 79 34.2
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 1.2e-06 57.8 55 47.3
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 1.2e-06 57.8 94 34.0
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 1.2e-06 57.8 125 32.0
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 1.5e-06 57.4 72 40.3
AL1G36930 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 2.0e-06 57.0 123 28.5
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 2.0e-06 57.0 56 44.6
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 2.6e-06 56.6 72 37.5
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 2.6e-06 56.6 65 38.5
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 3.4e-06 56.2 73 38.4
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 4.5e-06 55.8 90 33.3
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 4.5e-06 55.8 71 38.0
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 5.8e-06 55.5 67 37.3
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 7.6e-06 55.1 112 31.2
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 7.6e-06 55.1 62 40.3
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 7.6e-06 55.1 72 36.1
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 7.6e-06 55.1 72 37.5
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 7.6e-06 55.1 81 37.0


User provided reference genes

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