Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1620.1 830 100.0
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 0.0e+00 1575.8 831 95.2
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1483.8 834 90.3
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 0.0e+00 1481.5 833 90.0
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 0.0e+00 1382.9 836 83.3
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 0.0e+00 1376.7 832 84.9
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 0.0e+00 1314.3 836 82.3
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 0.0e+00 1300.0 832 79.1
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1282.3 831 78.7
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1278.1 833 78.2
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 0.0e+00 1278.1 833 78.2
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 0.0e+00 1256.1 823 78.9
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 0.0e+00 1232.2 832 75.8
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 0.0e+00 1231.9 831 75.2
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 0.0e+00 1119.0 845 69.2
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 0.0e+00 1106.7 710 78.3
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 2.2e-277 959.1 845 60.2
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 4.0e-223 778.9 860 49.4
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 2.4e-220 769.6 868 50.3
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 1.6e-219 766.9 868 50.9
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 1.3e-218 763.8 864 50.5
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 4.7e-216 755.4 888 48.2
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 8.0e-216 754.6 887 47.9
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 1.2e-214 750.7 1006 43.8
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 9.8e-214 747.7 870 49.4
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 2.7e-211 739.6 899 47.9
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.7e-211 739.6 859 47.5
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 2.5e-209 733.0 856 48.8
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 4.3e-209 732.3 887 47.1
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 4.7e-208 728.8 920 45.0
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 4.6e-203 712.2 742 52.3
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 4.6e-203 712.2 830 46.5
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 5.1e-202 708.8 813 49.2
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 2.1e-200 703.4 879 47.2
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 3.5e-195 686.0 1004 43.9
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 1.0e-194 684.5 869 48.8
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 2.3e-194 683.3 869 45.5
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 3.9e-194 682.6 994 41.9
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.5e-193 680.6 983 42.9
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 5.6e-193 678.7 1042 43.6
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 6.9e-191 671.8 898 47.6
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 1.5e-190 670.6 891 45.0
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 1.7e-189 667.2 940 42.4
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 8.4e-189 664.8 1072 39.7
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 1.3e-186 657.5 881 47.3
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 5.1e-186 655.6 877 44.7
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 4.3e-185 652.5 964 40.4
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 1.6e-184 650.6 1065 39.1
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 4.0e-183 646.0 897 43.6
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 1.3e-181 641.0 910 42.6
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 2.2e-181 640.2 717 48.3
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 4.2e-180 636.0 947 41.2
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 1.2e-179 634.4 975 43.8
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 2.7e-179 633.3 905 42.1
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 3.5e-179 632.9 898 40.6
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.8e-178 630.6 876 44.2
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 2.3e-178 630.2 1056 38.0
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 7.4e-177 625.2 803 43.7
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 1.3e-176 624.4 1028 38.4
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 2.1e-176 623.6 932 41.2
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 3.7e-176 622.9 1034 42.0
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 3.7e-176 622.9 928 40.2
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 6.2e-176 622.1 947 45.2
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.5e-174 617.5 875 42.4
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 2.0e-174 617.1 943 40.3
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 2.2e-173 613.6 929 40.8
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 2.2e-173 613.6 929 40.8
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 2.2e-173 613.6 1058 38.5
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 1.4e-172 610.9 1075 37.4
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 9.3e-172 608.2 1050 38.2
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 1.2e-171 607.8 1008 37.7
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 3.9e-170 602.8 833 44.2
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.9e-169 600.5 1050 37.2
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 7.4e-169 598.6 901 41.3
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 1.2e-166 591.3 1087 35.2
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.0e-166 590.5 1040 39.6
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.0e-165 588.2 895 40.2
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 1.7e-165 587.4 903 40.1
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 6.5e-165 585.5 928 40.0
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 8.4e-165 585.1 979 36.8
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 9.3e-164 581.6 1004 37.6
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 7.4e-161 572.0 820 41.2
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 1.4e-159 567.8 837 42.4
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 5.9e-158 562.4 1128 34.3
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 2.5e-156 557.0 927 38.9
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 5.5e-156 555.8 926 39.3
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.6e-155 554.3 1079 36.1
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 4.6e-155 552.7 1060 34.6
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 8.8e-154 548.5 836 42.9
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 1.5e-153 547.7 516 54.1
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 3.7e-152 543.1 1011 34.9
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 6.3e-152 542.3 912 40.0
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 5.3e-151 539.3 846 40.7
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.6e-150 537.0 807 42.0
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 2.3e-146 523.9 618 46.6
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.4e-143 513.8 1082 32.9
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 4.1e-143 513.1 738 44.4
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 1.2e-139 501.5 994 35.6
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 7.4e-137 492.3 829 36.4
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 3.1e-135 486.9 1189 30.2
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 4.2e-132 476.5 651 43.6
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.4e-127 461.5 802 37.0
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 2.2e-125 454.1 941 35.6
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 3.2e-124 450.3 809 36.7
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 1.1e-119 435.3 643 40.7
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 2.8e-115 420.6 680 39.4
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 8.9e-114 415.6 497 46.9
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 7.8e-110 402.5 691 36.3
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 2.5e-108 397.5 365 54.8
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 9.8e-105 385.6 479 43.6
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 4.0e-98 363.6 315 58.1
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 5.2e-98 363.2 802 32.7
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 3.2e-95 354.0 745 33.4
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 3.9e-93 347.1 725 31.2
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 2.1e-70 271.6 536 36.6
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.3e-68 264.2 293 48.5
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 1.6e-54 218.8 373 41.0
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 3.3e-52 211.1 285 41.4
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 4.3e-52 210.7 646 28.6
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 6.9e-50 203.4 289 42.9
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 5.9e-49 200.3 334 35.3
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.2e-47 193.4 233 48.1
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 2.1e-46 191.8 231 47.2
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 7.9e-46 189.9 443 33.9
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 6.7e-45 186.8 131 64.1
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.9e-44 185.3 243 45.7
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.3e-36 157.9 212 45.8
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 7.4e-36 156.8 211 43.6
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 5.3e-34 150.6 218 40.4
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 2.5e-31 141.7 193 39.9
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.1e-30 138.7 245 47.3
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 2.1e-30 138.7 251 36.3
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 8.2e-27 126.7 342 30.4
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.8e-26 125.6 220 37.3
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 2.4e-26 125.2 212 38.2
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 4.5e-25 120.9 136 49.3
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 2.2e-24 118.6 227 37.9
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.9e-24 118.2 103 55.3
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 3.8e-24 117.9 186 36.0
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 3.0e-21 108.2 192 39.6
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.1e-15 89.7 59 64.4
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 1.2e-14 86.3 101 47.5
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.4e-13 82.8 118 44.1
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 4.0e-13 81.3 194 34.0
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 1.5e-12 79.3 144 32.6
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.8e-11 75.1 100 43.0
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 2.9e-08 65.1 51 52.9
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 3.8e-08 64.7 158 31.0
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 3.2e-07 61.6 40 72.5


User provided reference genes

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