Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 2.9e-51 204.9 101 100.0
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 1.4e-50 202.6 101 99.0
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 1.6e-30 136.0 68 100.0
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 2.2e-27 125.6 68 94.1
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 2.2e-27 125.6 68 94.1
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 5.1e-24 114.4 69 84.1
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 2.0e-23 112.5 77 77.9
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 9.7e-23 110.2 66 81.8
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 1.1e-21 106.7 77 74.0
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.5e-20 102.8 62 85.5
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 2.0e-20 102.4 66 75.8
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 4.5e-20 101.3 52 94.2
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 4.5e-20 101.3 52 94.2
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 1.3e-19 99.8 64 81.2
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 5.0e-19 97.8 52 92.3
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 2.7e-17 92.0 53 83.0
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 1.8e-16 89.4 52 82.7
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 1.8e-16 89.4 52 82.7
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 1.8e-16 89.4 52 82.7
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 1.8e-16 89.4 52 82.7
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 1.7e-14 82.8 64 68.8
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 1.4e-13 79.7 58 72.4
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 2.4e-13 79.0 58 70.7
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 2.4e-13 79.0 58 70.7
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.0e-12 75.9 51 68.6
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.6e-12 75.5 51 66.7
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 4.5e-12 74.7 53 64.2
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 4.5e-12 74.7 53 64.2
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 7.7e-12 73.9 77 49.4
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 1.0e-11 73.6 54 64.8
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 1.0e-11 73.6 68 55.9
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 1.0e-11 73.6 55 63.6
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 1.7e-11 72.8 57 66.7
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 1.7e-11 72.8 53 66.0
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 1.7e-11 72.8 70 57.1
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.2e-11 72.4 53 64.2
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 2.2e-11 72.4 77 50.6
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 2.9e-11 72.0 89 46.1
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.9e-11 72.0 54 63.0
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 3.8e-11 71.6 53 62.3
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 5.0e-11 71.2 51 64.7
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 6.5e-11 70.9 57 61.4
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 6.5e-11 70.9 53 66.0
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 6.5e-11 70.9 58 60.3
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 8.5e-11 70.5 61 60.7
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 1.1e-10 70.1 58 62.1
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.5e-10 69.7 53 60.4
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.9e-10 69.3 78 48.7
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.9e-10 69.3 68 52.9
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.5e-10 68.9 54 61.1
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 3.2e-10 68.6 53 58.5
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.2e-10 68.2 62 59.7
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 4.2e-10 68.2 51 60.8
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 5.5e-10 67.8 71 52.1
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 5.5e-10 67.8 58 60.3
THA.LOC109116474 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 5.5e-10 67.8 68 57.4
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 7.2e-10 67.4 48 66.7
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 9.4e-10 67.0 54 59.3
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.6e-09 66.2 49 65.3
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.6e-09 66.2 54 57.4
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.1e-09 65.9 54 59.3
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 2.7e-09 65.5 44 70.5
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 3.6e-09 65.1 59 52.5
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 4.7e-09 64.7 56 55.4
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 4.7e-09 64.7 59 52.5
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 6.1e-09 64.3 53 58.5
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 1.0e-08 63.5 88 44.3
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.4e-08 63.2 60 55.0
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.8e-08 62.8 46 60.9
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.8e-08 62.8 46 60.9
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.8e-08 62.8 55 52.7
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.3e-08 62.4 49 63.3
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 2.3e-08 62.4 44 63.6
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.3e-08 62.4 48 58.3
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 3.0e-08 62.0 54 51.9
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 4.0e-08 61.6 51 62.7
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 4.0e-08 61.6 69 52.2
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 4.0e-08 61.6 49 61.2
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 4.0e-08 61.6 57 56.1
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 4.0e-08 61.6 60 53.3
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 5.2e-08 61.2 55 58.2
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 6.7e-08 60.8 52 53.8
THA.LOC109116673 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 6.7e-08 60.8 68 50.0
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 8.8e-08 60.5 61 49.2
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.1e-07 60.1 52 55.8
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.1e-07 60.1 54 51.9
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.1e-07 60.1 47 57.4
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.5e-07 59.7 77 42.9
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 2.0e-07 59.3 45 60.0
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 2.0e-07 59.3 62 51.6
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.3e-07 58.5 61 52.5
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 4.4e-07 58.2 48 60.4
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 5.7e-07 57.8 60 51.7
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 5.7e-07 57.8 60 51.7
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 5.7e-07 57.8 60 51.7
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 5.7e-07 57.8 68 41.2
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 5.7e-07 57.8 72 44.4
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 5.7e-07 57.8 61 49.2
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 5.7e-07 57.8 62 53.2
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 5.7e-07 57.8 41 65.9
HanXRQChr04g0107311 Helianthus annuus HOM05D003533 ORTHO05D004009 7.5e-07 57.4 48 52.1
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 7.5e-07 57.4 69 47.8
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 7.5e-07 57.4 37 70.3
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 7.5e-07 57.4 37 70.3
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 9.7e-07 57.0 70 41.4
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 9.7e-07 57.0 49 55.1
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 9.7e-07 57.0 66 47.0
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.3e-06 56.6 53 49.1
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.7e-06 56.2 55 47.3
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.2e-06 55.8 60 50.0
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 2.2e-06 55.8 69 47.8
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 2.8e-06 55.5 90 40.0
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.8e-06 55.5 52 51.9
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 3.7e-06 55.1 59 47.5
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 3.7e-06 55.1 58 48.3
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 4.8e-06 54.7 45 53.3
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 4.8e-06 54.7 44 56.8
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 6.3e-06 54.3 44 56.8
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 6.3e-06 54.3 39 64.1
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 8.2e-06 53.9 69 46.4
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 8.2e-06 53.9 63 46.0
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 8.2e-06 53.9 58 51.7
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 8.2e-06 53.9 58 51.7


User provided reference genes

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