Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 0.0e+00 1427.9 758 100.0
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 0.0e+00 1392.9 769 96.9
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 0.0e+00 1331.6 762 92.5
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 0.0e+00 1293.5 763 91.5
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 0.0e+00 1168.3 760 82.4
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 0.0e+00 1149.8 760 80.9
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 0.0e+00 1145.2 763 80.6
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 0.0e+00 1137.5 762 80.3
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 0.0e+00 1105.9 762 79.5
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 1.7e-300 1035.8 781 71.1
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 4.5e-298 1027.7 571 89.0
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 3.3e-285 984.9 778 71.7
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 8.5e-281 970.3 759 71.4
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 5.6e-240 834.7 752 58.2
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 3.7e-236 822.0 635 65.5
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 2.4e-235 819.3 704 58.4
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 2.5e-232 809.3 761 56.5
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 5.2e-230 801.6 761 57.2
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.8e-228 795.4 771 56.0
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 2.4e-227 792.7 713 61.7
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.2e-226 790.4 769 57.1
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 6.0e-226 788.1 768 55.5
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 2.5e-224 782.7 721 58.1
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 7.3e-224 781.2 768 58.2
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 6.2e-223 778.1 781 53.9
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 3.4e-221 772.3 622 62.4
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 1.3e-220 770.4 704 56.0
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.7e-220 770.0 721 59.6
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 2.2e-220 769.6 746 55.0
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 8.4e-220 767.7 710 56.9
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 8.4e-220 767.7 752 54.8
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 1.4e-219 766.9 725 55.4
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 9.3e-219 764.2 759 57.3
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.6e-218 763.5 618 62.6
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.0e-217 760.8 627 61.2
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 4.3e-216 755.4 749 54.6
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 1.6e-215 753.4 747 54.9
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 8.1e-215 751.1 719 58.6
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 1.1e-214 750.7 752 55.3
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 1.8e-214 750.0 733 52.5
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 5.3e-214 748.4 611 60.6
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 1.2e-213 747.3 758 54.4
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 4.5e-213 745.3 646 58.0
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 9.9e-213 744.2 766 54.4
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 2.2e-212 743.0 753 53.7
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 3.8e-212 742.3 759 55.9
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 6.4e-212 741.5 605 60.7
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 6.4e-212 741.5 598 60.9
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 4.6e-210 735.3 750 53.7
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 6.7e-209 731.5 597 59.8
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 3.3e-208 729.2 695 56.0
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 4.3e-208 728.8 710 57.2
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 4.8e-207 725.3 547 63.6
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 6.2e-207 724.9 753 52.7
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 5.8e-205 718.4 761 52.7
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 7.6e-205 718.0 766 53.9
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 1.8e-201 706.8 643 56.6
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.5e-200 703.7 623 57.9
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 1.6e-199 700.3 739 54.5
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 3.7e-199 699.1 634 56.6
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 8.2e-199 698.0 759 52.6
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 5.8e-197 691.8 744 53.2
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 8.4e-196 688.0 777 52.4
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 8.4e-196 688.0 632 55.1
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 8.4e-196 688.0 635 56.1
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 1.9e-195 686.8 644 55.3
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 3.2e-195 686.0 577 58.9
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 8.2e-191 671.4 726 50.4
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 1.0e-188 664.5 631 54.2
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 5.5e-187 658.7 632 54.6
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.1e-185 652.1 601 55.6
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 2.0e-184 650.2 1050 39.5
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.3e-184 649.0 753 51.4
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 3.7e-183 646.0 572 57.0
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 1.4e-182 644.0 775 47.1
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 9.1e-182 641.3 636 53.6
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.2e-180 636.7 602 54.5
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 8.5e-180 634.8 617 53.2
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 3.6e-178 629.4 502 61.8
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 4.4e-176 622.5 707 48.5
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.2e-173 614.4 619 51.4
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.0e-173 613.6 766 49.2
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 5.9e-173 612.1 820 45.9
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 9.4e-171 604.7 624 51.3
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 2.6e-168 596.7 635 49.0
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 2.2e-167 593.6 719 46.5
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.0e-161 572.8 656 51.4
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 5.4e-158 562.4 581 49.4
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 1.3e-156 557.8 619 49.3
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.5e-155 552.4 849 44.4
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 3.4e-152 543.1 585 47.9
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.2e-151 540.4 634 44.8
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 6.6e-148 528.9 588 47.4
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 2.0e-144 517.3 573 48.9
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.4e-142 511.1 393 65.9
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 5.9e-141 505.8 567 49.7
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 1.2e-136 491.5 671 41.6
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 4.4e-136 489.6 532 50.2
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 5.8e-136 489.2 381 63.8
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 4.7e-130 469.5 397 59.7
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.8e-121 441.0 539 49.0
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 8.9e-121 438.7 700 41.4
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.7e-119 434.5 786 39.9
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 7.3e-115 419.1 346 60.4
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 6.2e-114 416.0 325 61.5
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.1e-109 401.0 291 65.6
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 6.0e-109 399.4 312 63.1
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 6.0e-109 399.4 327 59.9
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 1.1e-107 395.2 353 58.6
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 8.1e-98 362.5 498 41.2
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 9.0e-97 359.0 444 42.8
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 5.8e-96 356.3 453 51.0
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 5.5e-94 349.7 522 38.5
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.6e-91 339.7 555 40.4
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 4.5e-80 303.5 490 37.1
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 4.6e-77 293.5 495 39.6
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 6.9e-73 279.6 602 30.9
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 3.4e-72 277.3 302 51.7
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 7.2e-70 269.6 329 47.7
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 3.6e-61 240.7 284 51.8
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 6.1e-61 240.0 216 56.9
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 2.2e-58 231.5 306 44.4
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 3.1e-57 227.6 153 69.3
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 1.6e-56 225.3 157 68.8
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.9e-54 218.4 220 47.7
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.3e-52 211.5 148 68.9
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 1.2e-51 209.1 200 56.5
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 2.4e-49 201.4 148 65.5
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 5.3e-49 200.3 136 71.3
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 1.0e-47 196.1 284 42.3
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 1.7e-47 195.3 356 37.9
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 3.6e-45 187.6 196 51.5
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 7.5e-43 179.9 233 43.8
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 2.0e-40 171.8 243 41.2
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 1.8e-36 158.7 296 37.2
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.7e-31 142.1 117 64.1
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 2.9e-31 141.4 351 33.0
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.6e-30 137.1 93 76.3
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 4.4e-27 127.5 288 31.2
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 9.8e-27 126.3 85 74.1
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.2e-25 121.3 120 55.0
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.2e-24 119.4 81 66.7
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.2e-24 119.4 268 31.3
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.0e-24 118.6 277 31.0
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 1.9e-22 112.1 84 64.3
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 6.2e-21 107.1 85 61.2
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 2.9e-18 98.2 71 70.4
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 8.3e-18 96.7 89 57.3
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 8.3e-18 96.7 106 50.9
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-17 95.9 71 67.6
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.5e-11 75.9 93 51.6
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 9.9e-11 73.2 81 50.6
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 6.6e-07 60.5 98 41.8
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 4.3e-06 57.8 41 65.9


User provided reference genes

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