Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 2.6e-49 198.4 98 100.0
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 2.6e-49 198.4 98 100.0
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 3.4e-49 198.0 98 99.0
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 3.4e-49 198.0 98 99.0
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 2.5e-44 181.8 90 98.9
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 8.2e-43 176.8 98 87.8
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 1.4e-42 176.0 98 86.7
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 3.1e-42 174.9 98 85.7
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 1.5e-41 172.6 98 84.7
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.0e-41 172.2 98 85.7
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 7.7e-41 170.2 99 84.8
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 6.5e-40 167.2 99 83.8
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 8.5e-40 166.8 98 81.6
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 2.1e-38 162.2 95 82.1
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 2.1e-38 162.2 93 83.9
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 2.0e-36 155.6 91 85.7
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 9.7e-36 153.3 97 76.3
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 6.3e-35 150.6 93 77.4
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 5.9e-25 117.5 105 60.0
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 1.3e-24 116.3 105 60.0
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 1.3e-24 116.3 103 64.1
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 1.7e-24 115.9 103 64.1
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 2.9e-24 115.2 105 59.0
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 3.8e-24 114.8 103 62.1
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 3.8e-24 114.8 103 62.1
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 5.0e-24 114.4 106 58.5
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 1.5e-23 112.8 105 56.2
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 2.5e-23 112.1 106 59.4
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 4.2e-23 111.3 105 58.1
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 9.4e-23 110.2 107 55.1
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.2e-22 109.8 104 57.7
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 2.7e-22 108.6 103 55.3
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 3.6e-22 108.2 106 55.7
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 3.6e-22 108.2 104 56.7
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 3.6e-22 108.2 104 56.7
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 6.1e-22 107.5 98 58.2
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 6.1e-22 107.5 98 63.3
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 1.0e-21 106.7 104 58.7
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 1.0e-21 106.7 104 58.7
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 1.0e-21 106.7 104 58.7
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 1.8e-21 105.9 102 55.9
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 4.8e-19 97.8 94 54.3
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 3.8e-16 88.2 113 46.0
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 8.5e-16 87.0 96 51.0
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 4.0e-13 78.2 72 59.7
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 5.7e-12 74.3 101 43.6
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 4.8e-11 71.2 86 46.5
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 8.3e-11 70.5 91 45.1
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 1.4e-10 69.7 96 42.7
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 5.4e-10 67.8 96 44.8
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 5.4e-10 67.8 96 44.8
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 5.4e-10 67.8 100 43.0
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.2e-09 66.6 91 40.7
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 2.0e-09 65.9 89 43.8
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 5.9e-09 64.3 88 42.0
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 5.9e-09 64.3 94 38.3
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 7.7e-09 63.9 95 44.2
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 7.7e-09 63.9 84 44.0
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.0e-08 63.5 104 38.5
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.3e-08 63.2 104 36.5
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.7e-08 62.8 102 36.3
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.7e-08 62.8 89 40.4
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.7e-08 62.8 102 38.2
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.2e-08 62.4 94 39.4
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.2e-08 62.4 100 39.0
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 2.2e-08 62.4 100 39.0
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 2.2e-08 62.4 96 41.7
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.9e-08 62.0 97 39.2
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 2.9e-08 62.0 99 38.4
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 3.8e-08 61.6 103 37.9
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 5.0e-08 61.2 107 38.3
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 5.0e-08 61.2 95 46.3
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 5.0e-08 61.2 107 42.1
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 5.0e-08 61.2 101 38.6
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 5.0e-08 61.2 89 40.4
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 6.5e-08 60.8 108 36.1
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 6.5e-08 60.8 106 40.6
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 8.5e-08 60.5 44 61.4
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.1e-07 60.1 36 77.8
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 1.1e-07 60.1 99 41.4
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.1e-07 60.1 89 41.6
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.5e-07 59.7 84 38.1
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 1.5e-07 59.7 93 40.9
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.9e-07 59.3 90 43.3
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 2.5e-07 58.9 94 41.5
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 2.5e-07 58.9 82 41.5
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.5e-07 58.9 104 36.5
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 2.5e-07 58.9 113 33.6
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 3.2e-07 58.5 83 44.6
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 3.2e-07 58.5 100 34.0
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 4.2e-07 58.2 88 39.8
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 4.2e-07 58.2 100 38.0
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 4.2e-07 58.2 100 38.0
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 5.5e-07 57.8 107 36.4
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 7.2e-07 57.4 90 35.6
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 7.2e-07 57.4 109 36.7
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 7.2e-07 57.4 88 40.9
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 9.4e-07 57.0 85 41.2
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 1.2e-06 56.6 47 59.6
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 1.2e-06 56.6 111 34.2
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 1.6e-06 56.2 87 43.7
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 1.6e-06 56.2 87 43.7
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.6e-06 56.2 88 39.8
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 2.1e-06 55.8 110 36.4
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 2.7e-06 55.5 88 39.8
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.6e-06 55.1 99 40.4
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 4.7e-06 54.7 93 36.6
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 4.7e-06 54.7 90 35.6
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 6.1e-06 54.3 85 37.6
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 6.1e-06 54.3 116 35.3
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 6.1e-06 54.3 109 38.5
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 8.0e-06 53.9 100 36.0
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 8.0e-06 53.9 88 36.4
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 8.0e-06 53.9 34 73.5


User provided reference genes

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