Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 5.1e-47 190.7 91 100.0
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 5.1e-47 190.7 91 100.0
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 4.3e-46 187.6 91 98.9
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 1.3e-45 186.0 91 97.8
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 3.6e-45 184.5 91 96.7
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 3.8e-42 174.5 91 91.2
Sp1g15090 Schrenkiella parvula HOM05D009829 ORTHO05D012418 2.9e-34 148.3 96 79.2
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 1.4e-33 146.0 95 78.9
C05p15270 Brassica napus HOM05D009829 ORTHO05D012418 5.5e-33 144.1 95 75.8
BcaC05g25551 Brassica carinata HOM05D009829 ORTHO05D012418 7.1e-33 143.7 95 74.7
A06p12860 Brassica napus HOM05D009829 ORTHO05D012418 2.1e-32 142.1 95 74.7
BraA06t24446Z Brassica rapa HOM05D009829 ORTHO05D012418 2.1e-32 142.1 95 74.7
BcaB02g06660 Brassica carinata HOM05D009829 ORTHO05D012418 6.0e-32 140.6 95 73.7
BcaB02g06661 Brassica carinata HOM05D009829 ORTHO05D012418 6.0e-32 140.6 95 73.7
BcaC07g41449 Brassica carinata HOM05D009829 ORTHO05D012418 2.3e-31 138.7 95 74.7
Carub.0001s1668 Capsella rubella HOM05D009829 ORTHO05D012418 6.2e-29 130.6 95 71.6
AL1G29130 Arabidopsis lyrata HOM05D009829 ORTHO05D012418 8.2e-29 130.2 95 69.5
AT1G16950 Arabidopsis thaliana HOM05D009829 ORTHO05D012418 6.9e-28 127.1 95 69.5
CARHR017460 Cardamine hirsuta HOM05D009829 ORTHO05D012418 2.6e-27 125.2 94 69.1
A09p60670 Brassica napus HOM05D009829 ORTHO05D000015 4.5e-27 124.4 77 79.2
BraA09t41438Z Brassica rapa HOM05D009829 ORTHO05D000015 4.5e-27 124.4 77 79.2
C08p44170 Brassica napus HOM05D009829 ORTHO05D000015 5.8e-27 124.0 77 77.9
BolC8t51964H Brassica oleracea HOM05D009829 ORTHO05D000015 5.8e-27 124.0 77 77.9
BolC5t30233H Brassica oleracea HOM05D009829 ORTHO05D012418 1.3e-26 122.9 76 77.6
Aa31LG7G1380 Aethionema arabicum HOM05D009829 ORTHO05D012418 1.7e-18 95.9 65 73.8
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 4.5e-11 71.2 92 50.0
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 2.2e-10 68.9 97 43.3
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 2.2e-10 68.9 87 49.4
THA.LOC109116623 Tarenaya hassleriana HOM05D009829 ORTHO05D012418 2.9e-10 68.6 91 46.2
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 8.5e-10 67.0 91 47.3
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 1.1e-09 66.6 89 44.9
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 1.4e-09 66.2 84 42.9
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 5.5e-09 64.3 92 44.6
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 7.2e-09 63.9 91 45.1
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 7.2e-09 63.9 100 43.0
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 9.4e-09 63.5 92 47.8
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 2.7e-08 62.0 94 39.4
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 3.6e-08 61.6 97 40.2
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 7.9e-08 60.5 101 43.6
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 7.9e-08 60.5 91 45.1
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 1.0e-07 60.1 84 45.2
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.4e-07 59.7 91 45.1
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 1.8e-07 59.3 57 54.4
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 2.3e-07 58.9 88 46.6
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 2.3e-07 58.9 96 42.7
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 2.3e-07 58.9 94 42.6
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 2.3e-07 58.9 98 40.8
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 3.0e-07 58.5 96 47.9
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.0e-07 58.5 98 44.9
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 3.0e-07 58.5 99 40.4
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.0e-07 58.5 88 47.7
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.9e-07 58.2 52 55.8
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 5.1e-07 57.8 92 41.3
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 5.1e-07 57.8 86 45.3
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 5.1e-07 57.8 87 46.0
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 6.7e-07 57.4 95 40.0
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 1.1e-06 56.6 62 45.2
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 1.1e-06 56.6 54 61.1
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.1e-06 56.6 52 53.8
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.5e-06 56.2 53 58.5
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 1.5e-06 56.2 93 45.2
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 1.5e-06 56.2 93 45.2
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 1.5e-06 56.2 91 41.8
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 1.5e-06 56.2 74 41.9
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 2.0e-06 55.8 104 40.4
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 2.0e-06 55.8 98 43.9
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 2.0e-06 55.8 58 50.0
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.6e-06 55.5 98 44.9
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.6e-06 55.5 98 44.9
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 2.6e-06 55.5 67 46.3
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 3.3e-06 55.1 59 45.8
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.3e-06 55.1 98 44.9
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 4.4e-06 54.7 93 37.6
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 4.4e-06 54.7 95 34.7
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 4.4e-06 54.7 51 54.9
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 4.4e-06 54.7 98 40.8
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 5.7e-06 54.3 66 48.5
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 5.7e-06 54.3 50 58.0
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 5.7e-06 54.3 91 41.8
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 5.7e-06 54.3 52 50.0
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 7.4e-06 53.9 66 48.5
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 7.4e-06 53.9 91 38.5
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 7.4e-06 53.9 83 42.2
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 7.4e-06 53.9 66 45.5
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 7.4e-06 53.9 52 53.8
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 9.7e-06 53.5 90 36.7
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 9.7e-06 53.5 60 48.3


User provided reference genes

Program Settings