Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 2.0e-39 165.2 80 100.0
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 1.9e-37 158.7 78 97.4
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 1.5e-34 149.1 78 91.0
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 1.5e-34 149.1 78 91.0
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 7.4e-34 146.7 78 89.7
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-33 145.6 75 93.3
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-33 145.6 75 93.3
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-33 145.6 75 93.3
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 1.6e-33 145.6 75 93.3
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 8.2e-33 143.3 75 92.0
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 1.4e-32 142.5 75 92.0
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 6.9e-32 140.2 79 87.3
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 7.7e-31 136.7 75 84.0
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.3e-30 136.0 75 85.3
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 5.0e-30 134.0 75 82.7
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 5.0e-30 134.0 75 82.7
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 5.0e-30 134.0 68 92.6
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 6.5e-30 133.7 74 83.8
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 3.2e-29 131.3 75 80.0
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 9.4e-29 129.8 75 78.7
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 3.1e-24 114.8 76 68.4
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 4.1e-24 114.4 75 69.3
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 6.9e-24 113.6 75 68.0
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 1.2e-23 112.8 75 69.3
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 1.2e-23 112.8 75 69.3
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.5e-23 112.5 75 66.7
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.0e-23 112.1 75 64.0
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.0e-23 112.1 75 68.0
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 2.6e-23 111.7 75 68.0
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 3.4e-23 111.3 76 63.2
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 4.5e-23 110.9 75 64.0
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 4.5e-23 110.9 75 65.3
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.9e-23 110.5 75 64.0
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 5.9e-23 110.5 75 64.0
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 7.7e-23 110.2 75 66.7
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 7.7e-23 110.2 75 65.3
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 1.3e-22 109.4 75 66.7
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.3e-22 109.4 75 64.0
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 1.7e-22 109.0 75 62.7
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 1.7e-22 109.0 75 64.0
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 2.2e-22 108.6 75 65.3
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 2.2e-22 108.6 75 65.3
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.9e-22 108.2 75 62.7
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 2.9e-22 108.2 75 62.7
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 3.8e-22 107.8 74 64.9
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 3.8e-22 107.8 75 62.7
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 5.0e-22 107.5 75 62.7
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 5.0e-22 107.5 75 64.0
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 5.0e-22 107.5 75 62.7
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 5.0e-22 107.5 75 68.0
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 6.5e-22 107.1 75 61.3
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 8.5e-22 106.7 76 63.2
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 8.5e-22 106.7 75 62.7
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 8.5e-22 106.7 75 62.7
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 1.1e-21 106.3 75 64.0
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 1.1e-21 106.3 76 61.8
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 1.4e-21 105.9 75 62.7
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 1.4e-21 105.9 75 60.0
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 1.4e-21 105.9 74 63.5
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 1.9e-21 105.5 76 65.8
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 2.5e-21 105.1 75 62.7
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 2.5e-21 105.1 75 62.7
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 2.5e-21 105.1 75 61.3
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 3.2e-21 104.8 74 63.5
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 3.2e-21 104.8 75 61.3
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.2e-21 104.8 75 61.3
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.2e-21 104.8 76 59.2
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 4.2e-21 104.4 75 61.3
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 5.5e-21 104.0 74 63.5
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 5.5e-21 104.0 75 64.0
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 7.2e-21 103.6 75 62.7
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 7.2e-21 103.6 76 59.2
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 7.2e-21 103.6 75 62.7
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 9.4e-21 103.2 76 61.8
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 9.4e-21 103.2 75 62.7
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 9.4e-21 103.2 75 62.7
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 1.2e-20 102.8 75 60.0
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 2.1e-20 102.1 75 61.3
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 2.1e-20 102.1 74 60.8
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 2.7e-20 101.7 77 62.3
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 3.6e-20 101.3 85 57.6
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 3.6e-20 101.3 70 64.3
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 3.6e-20 101.3 75 58.7
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 4.7e-20 100.9 70 62.9
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 6.1e-20 100.5 75 60.0
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 7.9e-20 100.1 76 55.3
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.0e-19 99.8 76 56.6
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 1.0e-19 99.8 76 63.2
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-19 99.8 76 63.2
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 1.0e-19 99.8 76 63.2
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.0e-19 99.8 76 57.9
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 1.4e-19 99.4 76 63.2
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 1.4e-19 99.4 76 60.5
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.8e-19 99.0 76 56.6
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 1.8e-19 99.0 75 58.7
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.3e-19 98.6 76 56.6
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 2.3e-19 98.6 77 57.1
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 2.3e-19 98.6 76 56.6
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 3.0e-19 98.2 70 62.9
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 3.9e-19 97.8 76 55.3
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 3.9e-19 97.8 76 55.3
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 3.9e-19 97.8 76 55.3
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 3.9e-19 97.8 77 54.5
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 5.1e-19 97.4 76 55.3
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 5.1e-19 97.4 76 61.8
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 5.1e-19 97.4 76 56.6
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 6.7e-19 97.1 77 54.5
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 6.7e-19 97.1 77 54.5
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 6.7e-19 97.1 76 55.3
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 8.8e-19 96.7 76 52.6
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 8.8e-19 96.7 76 55.3
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 8.8e-19 96.7 75 57.3
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-18 96.3 76 53.9
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-18 96.3 76 61.8
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 1.1e-18 96.3 76 53.9
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 1.1e-18 96.3 76 61.8
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.1e-18 96.3 83 55.4
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 2.0e-18 95.5 91 51.6
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 2.0e-18 95.5 77 58.4
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 2.6e-18 95.1 75 54.7
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 3.3e-18 94.7 76 53.9
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 5.7e-18 94.0 76 52.6
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 5.7e-18 94.0 75 56.0
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 1.7e-17 92.4 72 54.2
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 2.2e-17 92.0 75 54.7
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 3.7e-17 91.3 75 53.3
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 4.8e-17 90.9 44 93.2
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 5.3e-16 87.4 75 50.7
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 7.0e-16 87.0 75 52.0
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 9.1e-16 86.7 59 66.1
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 1.6e-15 85.9 85 48.2
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 4.5e-15 84.3 75 48.0
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 4.5e-15 84.3 77 51.9
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 5.9e-15 84.0 75 49.3
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 1.0e-14 83.2 76 51.3
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.9e-14 81.6 67 52.2
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 6.5e-14 80.5 60 60.0
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 5.5e-13 77.4 60 53.3
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 9.4e-13 76.6 47 76.6
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 9.4e-13 76.6 47 76.6
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 2.7e-12 75.1 52 61.5
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 2.7e-12 75.1 75 49.3
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 4.0e-11 71.2 64 43.8
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 5.2e-11 70.9 57 56.1
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 2.0e-10 68.9 50 58.0
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 2.6e-10 68.6 50 54.0
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 5.7e-10 67.4 50 62.0
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 5.7e-10 67.4 71 39.4
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 6.3e-09 63.9 52 55.8
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 2.0e-07 58.9 42 57.1
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 2.9e-06 55.1 39 56.4
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 3.8e-06 54.7 41 56.1
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 5.0e-06 54.3 34 67.6


User provided reference genes

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