Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 3.8e-42 174.5 91 100.0
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 3.8e-42 174.5 91 100.0
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 8.7e-23 110.2 60 98.3
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 8.7e-23 110.2 60 98.3
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 8.7e-23 110.2 60 98.3
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 8.7e-23 110.2 60 98.3
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 8.7e-23 110.2 60 98.3
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 8.7e-23 110.2 60 98.3
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 1.5e-22 109.4 60 96.7
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 4.3e-22 107.8 60 95.0
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 4.3e-22 107.8 60 95.0
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 7.4e-22 107.1 60 93.3
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 4.8e-21 104.4 60 93.3
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 4.8e-21 104.4 60 93.3
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 4.8e-21 104.4 60 93.3
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 6.3e-21 104.0 60 90.0
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 1.1e-20 103.2 60 90.0
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 1.4e-20 102.8 60 88.3
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 1.8e-20 102.4 57 96.5
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 1.8e-20 102.4 57 96.5
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 1.8e-20 102.4 57 96.5
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 1.8e-20 102.4 57 96.5
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 1.8e-20 102.4 57 96.5
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 2.4e-20 102.1 60 90.0
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.4e-20 102.1 60 91.7
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 4.1e-20 101.3 60 90.0
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 5.3e-20 100.9 60 90.0
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 6.9e-20 100.5 60 88.3
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 6.9e-20 100.5 60 90.0
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 6.9e-20 100.5 60 90.0
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 6.9e-20 100.5 60 88.3
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 9.0e-20 100.1 57 93.0
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 9.0e-20 100.1 60 86.7
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 9.0e-20 100.1 60 90.0
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.5e-19 99.4 60 88.3
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 1.5e-19 99.4 60 86.7
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 2.0e-19 99.0 60 85.0
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 2.0e-19 99.0 60 88.3
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 2.0e-19 99.0 60 86.7
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 2.0e-19 99.0 60 86.7
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 2.0e-19 99.0 60 86.7
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 2.6e-19 98.6 60 86.7
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 2.6e-19 98.6 60 86.7
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 2.6e-19 98.6 60 86.7
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 3.4e-19 98.2 60 85.0
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 3.4e-19 98.2 60 88.3
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 4.5e-19 97.8 60 86.7
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 4.5e-19 97.8 53 100.0
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 5.9e-19 97.4 60 85.0
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 7.6e-19 97.1 60 86.7
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 7.6e-19 97.1 60 86.7
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 7.6e-19 97.1 60 86.7
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 1.7e-18 95.9 60 86.7
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 1.7e-18 95.9 60 83.3
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 1.7e-18 95.9 60 83.3
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 2.2e-18 95.5 60 85.0
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 2.2e-18 95.5 69 78.3
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 2.2e-18 95.5 60 83.3
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 2.2e-18 95.5 60 85.0
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 2.9e-18 95.1 60 81.7
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 3.8e-18 94.7 60 86.7
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 3.8e-18 94.7 60 85.0
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 3.8e-18 94.7 70 75.7
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 3.8e-18 94.7 87 63.2
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 3.8e-18 94.7 60 83.3
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 5.0e-18 94.4 60 81.7
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 6.5e-18 94.0 60 83.3
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 8.5e-18 93.6 60 83.3
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 8.5e-18 93.6 60 80.0
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 1.1e-17 93.2 60 80.0
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 1.4e-17 92.8 88 64.8
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 1.9e-17 92.4 60 83.3
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 2.5e-17 92.0 66 75.8
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 2.5e-17 92.0 60 86.7
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 3.2e-17 91.7 60 85.0
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 4.2e-17 91.3 57 84.2
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 4.2e-17 91.3 60 81.7
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 5.5e-17 90.9 60 83.3
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 5.5e-17 90.9 57 86.0
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 7.2e-17 90.5 54 87.0
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 7.2e-17 90.5 60 85.0
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 7.2e-17 90.5 60 85.0
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 9.3e-17 90.1 60 85.0
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 1.2e-16 89.7 60 78.3
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 1.2e-16 89.7 61 83.6
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 1.2e-16 89.7 60 81.7
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 1.6e-16 89.4 60 83.3
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 1.6e-16 89.4 59 79.7
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 2.1e-16 89.0 55 85.5
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.1e-16 89.0 60 83.3
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 2.1e-16 89.0 60 83.3
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 2.7e-16 88.6 60 83.3
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 6.1e-16 87.4 56 80.4
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 7.9e-16 87.0 60 78.3
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 1.0e-15 86.7 60 81.7
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.4e-15 86.3 54 87.0
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 1.8e-15 85.9 60 76.7
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 1.8e-15 85.9 54 87.0
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 2.3e-15 85.5 58 79.3
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 3.0e-15 85.1 60 75.0
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 3.0e-15 85.1 58 84.5
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 5.1e-15 84.3 60 73.3
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 8.8e-15 83.6 69 71.0
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 8.8e-15 83.6 60 76.7
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 1.5e-14 82.8 60 71.7
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 1.5e-14 82.8 60 78.3
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 2.5e-14 82.0 85 58.8
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 2.5e-14 82.0 60 78.3
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 3.3e-14 81.6 55 85.5
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 3.3e-14 81.6 60 78.3
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 4.3e-14 81.3 53 81.1
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 1.3e-13 79.7 60 70.0
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 1.1e-12 76.6 60 71.7
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 1.1e-12 76.6 60 71.7
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 5.3e-12 74.3 64 71.9
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 5.9e-11 70.9 55 70.9
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 1.7e-10 69.3 55 74.5
BraA08t35089Z Brassica rapa HOM05D006417 ORTHO05D008113 8.5e-10 67.0 37 94.6
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 4.7e-08 61.2 51 68.6
Cre10.g438600 Chlamydomonas reinhardtii HOM05D006417 ORTHO05D008113 1.8e-07 59.3 60 60.0
Lalb_Chr04g0262751 Lupinus albus HOM05D006417 ORTHO05D008113 1.8e-07 59.3 35 85.7
ClCG09G002080 Citrullus lanatus HOM05D000001 ORTHO05D000003 8.8e-07 57.0 35 80.0
Nitab4.5_0004241g0020 Nicotiana tabacum HOM05D006417 ORTHO05D008113 8.8e-07 57.0 55 63.6
Nitab4.5_0002859g0060 Nicotiana tabacum HOM05D006417 ORTHO05D008113 1.1e-06 56.6 60 60.0


User provided reference genes

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