Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 2.3e-37 158.3 75 100.0
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 2.4e-34 148.3 75 93.3
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 4.5e-33 144.1 75 90.7
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 4.5e-33 144.1 75 90.7
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 4.5e-33 144.1 75 90.7
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 2.2e-32 141.7 75 92.0
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 8.5e-32 139.8 75 90.7
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 1.4e-31 139.0 75 88.0
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.4e-31 139.0 75 90.7
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.9e-31 138.7 75 90.7
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.9e-31 138.7 75 90.7
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 1.2e-30 136.0 75 88.0
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.1e-30 135.2 75 88.0
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 3.9e-29 131.0 75 84.0
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 3.9e-29 131.0 75 84.0
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 3.9e-29 131.0 75 84.0
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 3.9e-29 131.0 75 84.0
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 3.9e-29 131.0 75 84.0
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 6.7e-29 130.2 75 82.7
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 6.7e-29 130.2 75 84.0
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 8.8e-29 129.8 75 84.0
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 2.0e-28 128.6 76 81.6
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 9.7e-28 126.3 75 80.0
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 2.2e-27 125.2 75 81.3
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 6.3e-27 123.6 75 84.0
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 8.2e-27 123.2 75 80.0
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 9.1e-26 119.8 75 77.3
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 2.6e-25 118.2 71 80.3
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 3.5e-25 117.9 71 77.5
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 7.7e-25 116.7 75 78.7
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 7.2e-23 110.2 65 76.9
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.2e-22 109.4 74 71.6
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 3.6e-22 107.8 67 71.6
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 1.0e-21 106.3 68 69.1
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.0e-21 106.3 73 68.5
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.0e-21 106.3 73 68.5
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 2.3e-21 105.1 65 73.8
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 3.0e-21 104.8 65 72.3
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 3.0e-21 104.8 66 74.2
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 5.2e-21 104.0 69 71.0
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 8.8e-21 103.2 72 63.9
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 8.8e-21 103.2 68 72.1
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 8.8e-21 103.2 72 68.1
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.1e-20 102.8 60 73.3
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.1e-20 102.8 60 73.3
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 1.1e-20 102.8 60 73.3
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 1.5e-20 102.4 66 71.2
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 2.0e-20 102.1 71 66.2
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 2.6e-20 101.7 68 72.1
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 2.6e-20 101.7 66 69.7
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.3e-20 101.3 63 73.0
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 3.3e-20 101.3 61 73.8
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 4.4e-20 100.9 74 63.5
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 4.4e-20 100.9 68 69.1
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 4.4e-20 100.9 63 73.0
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 4.4e-20 100.9 63 73.0
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 4.4e-20 100.9 63 73.0
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 5.7e-20 100.5 60 75.0
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 7.4e-20 100.1 73 63.0
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 7.4e-20 100.1 58 75.9
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 7.4e-20 100.1 70 67.1
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 9.7e-20 99.8 63 69.8
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 1.7e-19 99.0 58 74.1
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.7e-19 99.0 57 77.2
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 1.7e-19 99.0 59 74.6
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 2.2e-19 98.6 65 75.4
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.2e-19 98.6 59 74.6
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.2e-19 98.6 59 74.6
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 2.2e-19 98.6 57 77.2
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 2.8e-19 98.2 66 69.7
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 2.8e-19 98.2 65 67.7
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 3.7e-19 97.8 62 69.4
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.8e-19 97.4 53 81.1
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 1.1e-18 96.3 66 66.7
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.8e-18 95.5 53 79.2
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 1.8e-18 95.5 64 65.6
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 1.8e-18 95.5 71 66.2
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 4.1e-18 94.4 58 70.7
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 4.1e-18 94.4 58 70.7
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 7.0e-18 93.6 59 71.2
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 1.6e-17 92.4 54 72.2
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 1.6e-17 92.4 65 69.2
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 2.6e-17 91.7 64 62.5
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 2.6e-17 91.7 59 69.5
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 2.6e-17 91.7 63 66.7
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 3.5e-17 91.3 62 67.7
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 3.5e-17 91.3 59 67.8
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.5e-17 90.9 59 67.8
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 4.5e-17 90.9 53 73.6
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 7.7e-17 90.1 54 72.2
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 7.7e-17 90.1 50 80.0
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 7.7e-17 90.1 58 69.0
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 1.7e-16 89.0 59 66.1
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 2.2e-16 88.6 65 66.2
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 2.2e-16 88.6 63 60.3
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 2.2e-16 88.6 58 74.1
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 3.8e-16 87.8 60 61.7
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 3.8e-16 87.8 60 61.7
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.8e-16 87.8 62 64.5
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 3.8e-16 87.8 58 70.7
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 6.5e-16 87.0 70 58.6
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 6.5e-16 87.0 70 58.6
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 6.5e-16 87.0 62 61.3
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 1.5e-15 85.9 58 70.7
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 1.5e-15 85.9 62 66.1
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 1.5e-15 85.9 59 67.8
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 4.2e-15 84.3 58 67.2
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 7.2e-15 83.6 47 78.7
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.2e-14 82.8 68 58.8
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 3.6e-14 81.3 58 62.1
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 4.7e-14 80.9 69 55.1
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 8.0e-14 80.1 46 76.1
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 4.0e-13 77.8 37 91.9
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 5.2e-13 77.4 62 58.1
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 8.8e-13 76.6 58 65.5
BcaB08g35768 Brassica carinata HOM05D005857 ORTHO05D007193 2.0e-12 75.5 44 81.8
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 7.5e-12 73.6 62 54.8
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 4.8e-11 70.9 58 51.7
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 7.0e-10 67.0 50 58.0
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 2.9e-08 61.6 53 49.1
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 5.0e-08 60.8 61 47.5
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 5.0e-08 60.8 30 83.3
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 8.5e-08 60.1 52 48.1
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 8.0e-06 53.5 60 45.0
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 8.0e-06 53.5 60 45.0


User provided reference genes

Program Settings