Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p16260 Brassica napus HOM05D000529 ORTHO05D027737 9.7e-77 290.0 144 100.0
BolC8t49245H Brassica oleracea HOM05D000529 ORTHO05D027737 4.8e-76 287.7 144 99.3
BcaC07g38695 Brassica carinata HOM05D000529 ORTHO05D027737 3.0e-70 268.5 134 100.0
BcaB03g13136 Brassica carinata HOM05D000529 ORTHO05D000472 4.7e-31 138.3 342 33.6
AT1G33560 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 9.6e-24 114.0 78 71.8
AL1G47950 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 1.6e-23 113.2 142 49.3
Carub.0001s3174 Capsella rubella HOM05D000529 ORTHO05D000472 1.1e-22 110.5 328 29.3
CARHR033020 Cardamine hirsuta HOM05D000529 ORTHO05D027737 4.4e-21 105.1 76 68.4
AT5G04720 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 7.6e-21 104.4 78 65.4
A10p31440 Brassica napus HOM05D000529 ORTHO05D000472 9.9e-21 104.0 129 48.1
BraA10t45190Z Brassica rapa HOM05D000529 ORTHO05D000472 9.9e-21 104.0 129 48.1
AL6G14380 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 1.3e-20 103.6 78 64.1
C09p72120 Brassica napus HOM05D000529 ORTHO05D000472 2.2e-20 102.8 129 48.1
BolC9t59956H Brassica oleracea HOM05D000529 ORTHO05D000472 2.2e-20 102.8 129 48.1
BcaC06g32180 Brassica carinata HOM05D000529 ORTHO05D000472 2.9e-20 102.4 129 48.1
Aa31LG11G5560 Aethionema arabicum HOM05D000529 ORTHO05D000472 8.4e-20 100.9 129 47.3
BcaB05g21751 Brassica carinata HOM05D000529 ORTHO05D000472 1.9e-19 99.8 129 44.2
Thhalv10012720m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 2.4e-19 99.4 78 61.5
Carub.0008s0047 Capsella rubella HOM05D000101 ORTHO05D000472 3.2e-19 99.0 78 60.3
CARHR208570 Cardamine hirsuta HOM05D000529 ORTHO05D000472 3.2e-19 99.0 130 46.2
Sp6g38100 Schrenkiella parvula HOM05D000529 ORTHO05D000472 3.2e-19 99.0 78 62.8
AT5G47280 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 9.3e-19 97.4 78 61.5
Carub.0006s0361 Capsella rubella HOM05D000529 ORTHO05D000472 2.7e-18 95.9 78 60.3
THA.LOC104803687 Tarenaya hassleriana HOM05D000529 ORTHO05D000472 1.0e-17 94.0 78 57.7
Thhalv10024421m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 1.3e-17 93.6 74 59.5
BcaB05g21752 Brassica carinata HOM05D000529 ORTHO05D000472 1.7e-17 93.2 128 43.0
CARHR241370 Cardamine hirsuta HOM05D000529 ORTHO05D000472 2.3e-17 92.8 78 57.7
Carub.0008s0668 Capsella rubella HOM05D000529 ORTHO05D000472 6.6e-17 91.3 129 45.7
Carub.0008s0669 Capsella rubella HOM05D000529 ORTHO05D000472 6.6e-17 91.3 129 45.7
Aa31LG7G9260 Aethionema arabicum HOM05D000529 ORTHO05D000472 8.7e-17 90.9 78 57.7
Sp7g31030 Schrenkiella parvula HOM05D000529 ORTHO05D000472 1.1e-16 90.5 74 58.1
AL7G18240 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 4.3e-16 88.6 78 53.8
BcaC09g52148 Brassica carinata HOM05D000529 ORTHO05D000472 4.3e-16 88.6 78 53.8
A01p04930 Brassica napus HOM05D000529 ORTHO05D000472 5.6e-16 88.2 78 53.8
C01p05330 Brassica napus HOM05D000529 ORTHO05D000472 5.6e-16 88.2 78 53.8
BolC1t00513H Brassica oleracea HOM05D000529 ORTHO05D000472 5.6e-16 88.2 78 53.8
BraA01t00475Z Brassica rapa HOM05D000529 ORTHO05D000472 5.6e-16 88.2 78 53.8
BcaC09g52139 Brassica carinata HOM05D000529 ORTHO05D000472 9.6e-16 87.4 78 53.8
Carub.0007s0717 Capsella rubella HOM05D000529 ORTHO05D000472 1.6e-15 86.7 78 52.6
C01p05360 Brassica napus HOM05D000529 ORTHO05D000472 4.8e-15 85.1 78 52.6
BolC1t00516H Brassica oleracea HOM05D000529 ORTHO05D000472 4.8e-15 85.1 78 52.6
BcaB03g12806 Brassica carinata HOM05D000529 ORTHO05D000472 6.2e-15 84.7 74 54.1
BraA08t33720Z Brassica rapa HOM05D000529 ORTHO05D000472 6.2e-15 84.7 74 51.4
BcaC01g00997 Brassica carinata HOM05D000529 ORTHO05D000472 8.1e-15 84.3 74 54.1
C03p86760 Brassica napus HOM05D000529 ORTHO05D000472 8.1e-15 84.3 74 54.1
BolC3t20969H Brassica oleracea HOM05D000529 ORTHO05D000472 8.1e-15 84.3 74 54.1
AT4G33300 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 5.3e-14 81.6 78 50.0
A08p17700 Brassica napus HOM05D000529 ORTHO05D000472 5.3e-14 81.6 74 50.0
Manes.05G169600 Manihot esculenta HOM05D000529 ORTHO05D000472 3.8e-12 75.5 78 46.2
CARHR033000 Cardamine hirsuta HOM05D000529 ORTHO05D000472 8.4e-12 74.3 56 62.5
Potri.002G129300 Populus trichocarpa HOM05D000529 ORTHO05D000472 8.4e-12 74.3 78 47.4
CANSAT25G0052 Cannabis sativa HOM05D000529 ORTHO05D000472 1.9e-11 73.2 78 43.6
Potri.014G035700 Populus trichocarpa HOM05D000529 ORTHO05D000472 3.2e-11 72.4 78 46.2
Gohir.A01G118200 Gossypium hirsutum HOM05D000529 ORTHO05D000472 7.1e-11 71.2 78 43.6
Gohir.D01G106500 Gossypium hirsutum HOM05D000529 ORTHO05D000472 7.1e-11 71.2 78 43.6
Gorai.002G130700 Gossypium raimondii HOM05D000529 ORTHO05D000472 7.1e-11 71.2 78 43.6
HanXRQChr05g0129181 Helianthus annuus HOM05D000529 ORTHO05D000472 9.3e-11 70.9 78 43.6
Sabra02G0101400 Salix brachista HOM05D000529 ORTHO05D000472 9.3e-11 70.9 78 44.9
Duzib093G1494 Durio zibethinus HOM05D000529 ORTHO05D000472 1.2e-10 70.5 78 43.6
RcHm_v2.0_Chr6g0299881 Rosa chinensis HOM05D000529 ORTHO05D000472 1.2e-10 70.5 78 43.6
Atru.chr13.609 Acer truncatum HOM05D000529 ORTHO05D000472 1.6e-10 70.1 78 44.9
CiPaw.15G065600 Carya illinoinensis HOM05D000529 ORTHO05D000472 2.7e-10 69.3 78 42.3
FAN27G0934 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.7e-10 69.3 78 43.6
Gohir.D05G263200 Gossypium hirsutum HOM05D000529 ORTHO05D000472 2.7e-10 69.3 78 42.3
Gorai.009G275000 Gossypium raimondii HOM05D000529 ORTHO05D000472 2.7e-10 69.3 78 42.3
SGA_v2.0_scaffold217G42412 Striga asiatica HOM05D000529 ORTHO05D000472 2.7e-10 69.3 90 41.1
HanXRQChr02g0046611 Helianthus annuus HOM05D000529 ORTHO05D000472 3.5e-10 68.9 78 39.7
QL02p006227 Quercus lobata HOM05D000529 ORTHO05D000472 3.5e-10 68.9 78 43.6
Thecc.08G015100 Theobroma cacao HOM05D000529 ORTHO05D000472 3.5e-10 68.9 78 42.3
TWI36G0871 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 3.5e-10 68.9 78 43.6
TWI56G1471 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 3.5e-10 68.9 78 44.9
BcaC09g52150 Brassica carinata HOM05D000529 ORTHO05D000472 4.6e-10 68.6 52 61.5
Gohir.A05G199700 Gossypium hirsutum HOM05D000529 ORTHO05D000472 4.6e-10 68.6 78 42.3
Gohir.D05G202700 Gossypium hirsutum HOM05D000529 ORTHO05D000472 4.6e-10 68.6 78 42.3
Gorai.009G208600 Gossypium raimondii HOM05D000529 ORTHO05D000472 4.6e-10 68.6 78 42.3
Os12g0586000 Oryza sativa ssp. japonica HOM05D000529 ORTHO05D000472 4.6e-10 68.6 78 41.0
DCAR_020939 Daucus carota HOM05D000529 ORTHO05D000472 6.0e-10 68.2 78 39.7
FvH4_2g40720 Fragaria vesca HOM05D000529 ORTHO05D000472 6.0e-10 68.2 78 42.3
FAN15G0230 Fragaria x ananassa HOM05D000529 ORTHO05D000472 6.0e-10 68.2 78 42.3
COL.COLO4_26439 Corchorus olitorius HOM05D000529 ORTHO05D000472 7.9e-10 67.8 78 41.0
Dinv39347 Davidia involucrata HOM05D000529 ORTHO05D000472 7.9e-10 67.8 78 42.3
Nn5g29354 Nelumbo nucifera HOM05D000529 ORTHO05D000472 7.9e-10 67.8 86 41.9
FAN15G2367 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.0e-09 67.4 78 42.3
FAN25G1210 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.0e-09 67.4 78 42.3
MBI16_g24703_MAGBIO Magnolia biondii HOM05D000529 ORTHO05D000472 1.0e-09 67.4 74 45.9
TWI56G0719 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 1.0e-09 67.4 78 43.6
Sabra14G0025500 Salix brachista HOM05D000529 ORTHO05D000472 1.3e-09 67.0 78 43.6
Lj4A49T79 Lonicera japonica HOM05D000529 ORTHO05D000472 1.8e-09 66.6 78 39.7
PGR031G2883 Punica granatum HOM05D000529 ORTHO05D000472 1.8e-09 66.6 78 39.7
PGR031G3276 Punica granatum HOM05D000529 ORTHO05D000472 1.8e-09 66.6 78 41.0
FAN25G1553 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.3e-09 66.2 74 43.2
Duzib041G0187 Durio zibethinus HOM05D000529 ORTHO05D000472 3.0e-09 65.9 78 41.0
Oeu033639.1 Olea europaea HOM05D000529 ORTHO05D000472 3.0e-09 65.9 74 43.2
TAR628G0230 Trochodendron aralioides HOM05D000431 ORTHO05D000472 3.0e-09 65.9 78 41.0
Cfa018498 Carpinus fangiana HOM05D000529 ORTHO05D000472 3.9e-09 65.5 78 42.3
Migut.C00618 Erythranthe guttata HOM05D000529 ORTHO05D000472 3.9e-09 65.5 78 41.0
Ciclev10000281m.g Citrus clementina HOM05D000529 ORTHO05D000472 5.1e-09 65.1 78 39.7
Zm00001eb134970 Zea mays HOM05D000529 ORTHO05D000472 5.1e-09 65.1 78 39.7
Cc10_g03810 Coffea canephora HOM05D000529 ORTHO05D000472 6.7e-09 64.7 78 41.0
Actinidia15273 Actinidia chinensis HOM05D000529 ORTHO05D000472 8.7e-09 64.3 78 41.0
EL10Ac1g01813 Beta vulgaris HOM05D000529 ORTHO05D000472 8.7e-09 64.3 88 39.8
AUR62031372 Chenopodium quinoa HOM05D000529 ORTHO05D000472 8.7e-09 64.3 74 40.5
CsaV3_4G034000 Cucumis sativus L. HOM05D000529 ORTHO05D000472 8.7e-09 64.3 78 39.7
Hund06330 Selenicereus undatus HOM05D000529 ORTHO05D000472 8.7e-09 64.3 78 38.5
Zm00001eb030390 Zea mays HOM05D000529 ORTHO05D000472 8.7e-09 64.3 78 39.7
AUR62033886 Chenopodium quinoa HOM05D000529 ORTHO05D000472 1.1e-08 63.9 74 40.5
ClCG05G019540 Citrullus lanatus HOM05D000529 ORTHO05D000472 1.1e-08 63.9 78 39.7
FAN19G2604 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.1e-08 63.9 78 41.0
Lsat_1_v5_gn_1_19281 Lactuca sativa HOM05D000529 ORTHO05D000472 1.1e-08 63.9 78 39.7
Sc02g0006820 Simmondsia chinensis HOM05D000529 ORTHO05D000472 1.1e-08 63.9 78 41.0
Ah.05g178400 Amaranthus hybridus HOM05D000529 ORTHO05D000472 1.5e-08 63.5 74 39.2
ECA247G1205 Erigeron canadensis HOM05D000529 ORTHO05D000472 1.5e-08 63.5 78 38.5
Prupe.1G389500 Prunus persica HOM05D000529 ORTHO05D000472 1.5e-08 63.5 78 41.0
Rhsim06G0041900 Rhododendron simsii HOM05D000529 ORTHO05D000472 1.5e-08 63.5 78 39.7
Dinv36002 Davidia involucrata HOM05D000529 ORTHO05D000472 1.9e-08 63.2 78 41.0
MD08G1042400 Malus domestica HOM05D000529 ORTHO05D000472 1.9e-08 63.2 78 42.3
Aqoxy5G01761_Aqoxy5G01762 Aquilegia oxysepala HOM05D000529 ORTHO05D000472 2.5e-08 62.8 74 40.5
Haze_17579 Corylus avellana HOM05D000529 ORTHO05D000472 2.5e-08 62.8 78 41.0
MD08G1041800 Malus domestica HOM05D000529 ORTHO05D000472 2.5e-08 62.8 78 42.3
Nn6g32096 Nelumbo nucifera HOM05D000529 ORTHO05D000472 2.5e-08 62.8 74 41.9
GSVIVG01009576001 Vitis vinifera HOM05D000529 ORTHO05D000472 2.5e-08 62.8 78 38.5
CSS0020808 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 4.3e-08 62.0 88 37.5
CSS0046943 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 4.3e-08 62.0 88 37.5
MD08G1042500 Malus domestica HOM05D000529 ORTHO05D000472 4.3e-08 62.0 78 41.0
MELO3C016725.2 Cucumis melo HOM05D000529 ORTHO05D000472 5.6e-08 61.6 77 39.0
Oeu009568.1 Olea europaea HOM05D000529 ORTHO05D000472 5.6e-08 61.6 88 38.6
vmacro21576 Vaccinium macrocarpon HOM05D000529 ORTHO05D000472 5.6e-08 61.6 78 39.7
CAN.G371.66 Capsicum annuum HOM05D000529 ORTHO05D000472 7.4e-08 61.2 78 38.5
Psat6g011240 Pisum sativum HOM05D000529 ORTHO05D000472 7.4e-08 61.2 78 39.7
Psat6g011280 Pisum sativum HOM05D000529 ORTHO05D000472 7.4e-08 61.2 78 39.7
Medtr1g021100 Medicago truncatula HOM05D000529 ORTHO05D000472 9.6e-08 60.8 78 37.2
Eucgr.F02383 Eucalyptus grandis HOM05D000529 ORTHO05D000472 1.6e-07 60.1 78 37.2
Hma1.2p1_0337F.1_g129230 Hydrangea macrophylla HOM05D000529 ORTHO05D000472 1.6e-07 60.1 78 38.5
Actinidia22597 Actinidia chinensis HOM05D000529 ORTHO05D000472 2.1e-07 59.7 78 37.2
MSTRG.25117 Avicennia marina HOM05D000529 ORTHO05D000472 2.8e-07 59.3 74 40.5
Nitab4.5_0000068g0290 Nicotiana tabacum HOM05D000529 ORTHO05D000472 3.7e-07 58.9 78 35.9
PGSC0003DMG400007999 Solanum tuberosum HOM05D000529 ORTHO05D000472 3.7e-07 58.9 78 37.2
COL.COLO4_04202 Corchorus olitorius HOM05D000005 ORTHO05D000012 4.8e-07 58.5 86 37.2
SalBow7G4054 Salvia bowleyana HOM05D000529 ORTHO05D000472 4.8e-07 58.5 78 38.5
Ca_13313_v3 Cicer arietinum L. HOM05D000529 ORTHO05D000472 6.2e-07 58.2 78 38.5
Nitab4.5_0005577g0010 Nicotiana tabacum HOM05D000529 ORTHO05D000472 6.2e-07 58.2 78 35.9
Peaxi162Scf01092g00129 Petunia axillaris HOM05D000529 ORTHO05D000472 6.2e-07 58.2 88 34.1
Solyc04g079420.3 Solanum lycopersicum HOM05D000529 ORTHO05D000472 6.2e-07 58.2 78 37.2
Sopen04g033030 Solanum pennellii HOM05D000529 ORTHO05D000472 6.2e-07 58.2 78 37.2
Cpa.g.sc64.11 Carica papaya HOM05D000529 ORTHO05D000472 8.1e-07 57.8 52 53.8
FAN02G2651 Fragaria x ananassa HOM05D000529 ORTHO05D000472 8.1e-07 57.8 70 38.6
Glyma.17G245500 Glycine max HOM05D000529 ORTHO05D000472 1.4e-06 57.0 79 41.8
HanXRQChr09g0243851 Helianthus annuus HOM05D000046 ORTHO05D000472 1.4e-06 57.0 43 55.8
MSTRG.1325 Avicennia marina HOM05D000529 ORTHO05D000472 1.8e-06 56.6 79 39.2
SEGI_03084 Sequoiadendron giganteum HOM05D000529 ORTHO05D000472 1.8e-06 56.6 74 35.1
Pp3c16_23160 Physcomitrium patens HOM05D003016 ORTHO05D009718 3.1e-06 55.8 88 35.2
SEGI_18969 Sequoiadendron giganteum HOM05D000529 ORTHO05D000472 3.1e-06 55.8 78 38.5
VMungo0647G1042 Vigna mungo HOM05D000529 ORTHO05D000472 3.1e-06 55.8 79 41.8
Glyma.13G092200 Glycine max HOM05D000529 ORTHO05D000472 5.3e-06 55.1 77 40.3
Glyma.14G079600 Glycine max HOM05D000529 ORTHO05D000472 5.3e-06 55.1 79 40.5
SEGI_08709 Sequoiadendron giganteum HOM05D000529 ORTHO05D000472 5.3e-06 55.1 113 32.7
arahy.Tifrunner.gnm1.ann1.3L0H24 Arachis hypogaea HOM05D000529 ORTHO05D000472 9.0e-06 54.3 74 37.8
arahy.Tifrunner.gnm1.ann1.FF44RV Arachis hypogaea HOM05D000529 ORTHO05D000472 9.0e-06 54.3 74 37.8
CARHR240480 Cardamine hirsuta HOM05D000529 ORTHO05D033773 9.0e-06 54.3 58 44.8


User provided reference genes

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