Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 7.3e-155 550.4 263 100.0
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 9.9e-128 460.3 226 98.2
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 9.4e-102 374.0 201 91.0
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 1.6e-101 373.2 198 91.9
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 3.0e-100 369.0 230 84.3
BcaC07g38691 Brassica carinata HOM05D004123 ORTHO05D004768 1.0e-95 354.0 223 80.3
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 4.2e-86 322.0 230 75.7
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 5.9e-80 301.6 223 73.5
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 6.1e-69 265.0 222 68.5
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 9.8e-67 257.7 225 63.6
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.2e-61 240.7 230 60.9
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 1.8e-60 236.9 227 61.2
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.5e-59 233.8 223 62.3
BraA06t24033Z Brassica rapa HOM05D004123 ORTHO05D004768 2.3e-55 219.9 224 55.8
C05p09900 Brassica napus HOM05D004123 ORTHO05D004768 2.5e-54 216.5 224 54.5
BolC5t29729H Brassica oleracea HOM05D004123 ORTHO05D004768 2.5e-54 216.5 224 54.5
A06p08360 Brassica napus HOM05D004123 ORTHO05D004768 1.6e-53 213.8 224 54.9
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 9.2e-41 171.4 228 51.8
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.5e-38 164.1 221 51.1
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 5.6e-30 135.6 216 46.3
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 5.6e-30 135.6 216 46.3
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 5.6e-30 135.6 216 46.3
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 1.2e-29 134.4 223 46.6
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.1e-28 131.3 219 44.7
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 1.4e-28 131.0 232 45.3
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 3.1e-28 129.8 234 43.2
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 4.4e-27 125.9 223 45.3
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 4.4e-27 125.9 230 44.3
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 5.8e-27 125.6 220 44.1
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.7e-26 124.0 240 42.9
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 2.9e-26 123.2 223 40.8
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 8.4e-26 121.7 250 41.6
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 8.4e-26 121.7 250 41.6
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 8.4e-26 121.7 221 43.4
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.1e-25 121.3 258 40.3
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.4e-25 120.9 220 42.7
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 3.2e-25 119.8 250 41.6
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 5.4e-25 119.0 234 41.9
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.6e-24 117.5 238 39.1
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 2.7e-24 116.7 227 41.0
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 4.6e-24 115.9 237 39.7
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 4.6e-24 115.9 225 42.2
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 6.0e-24 115.5 233 40.3
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.0e-23 114.8 227 44.1
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.0e-23 114.8 234 42.7
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.3e-23 114.4 233 43.8
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 3.0e-23 113.2 231 39.8
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 3.9e-23 112.8 233 42.9
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 3.9e-23 112.8 259 40.9
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 3.9e-23 112.8 234 40.2
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 3.9e-23 112.8 187 46.0
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 5.1e-23 112.5 233 42.5
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 6.6e-23 112.1 224 42.9
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 8.7e-23 111.7 258 39.1
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 8.7e-23 111.7 198 42.4
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 8.7e-23 111.7 224 43.8
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.5e-22 110.9 229 39.3
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 3.3e-22 109.8 241 40.7
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 4.3e-22 109.4 252 40.9
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 9.6e-22 108.2 235 41.7
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 1.3e-21 107.8 238 40.8
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.3e-21 107.8 290 38.3
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.3e-21 107.8 283 38.2
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.6e-21 107.5 283 38.2
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 1.6e-21 107.5 224 40.2
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 3.6e-21 106.3 256 37.5
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 3.6e-21 106.3 206 42.7
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 4.8e-21 105.9 224 40.6
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 4.8e-21 105.9 253 41.1
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 8.1e-21 105.1 226 41.6
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 8.1e-21 105.1 239 40.2
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.4e-20 104.4 238 39.5
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 3.1e-20 103.2 227 40.1
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 4.0e-20 102.8 234 38.5
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 5.3e-20 102.4 243 39.9
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 5.3e-20 102.4 232 40.1
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 2.6e-19 100.1 235 38.3
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.6e-19 100.1 218 38.1
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.6e-19 100.1 209 40.7
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 4.5e-19 99.4 231 37.2
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 5.8e-19 99.0 232 37.9
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 9.9e-19 98.2 229 38.0
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.2e-18 97.1 214 40.2
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.2e-18 97.1 256 38.3
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 2.9e-18 96.7 146 49.3
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 2.9e-18 96.7 210 40.5
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 3.8e-18 96.3 217 38.2
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 4.9e-18 95.9 172 43.0
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 8.4e-18 95.1 185 40.0
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.1e-17 94.7 200 41.5
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 1.4e-17 94.4 262 34.4
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 1.9e-17 94.0 258 36.8
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 4.2e-17 92.8 144 44.4
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 5.4e-17 92.4 212 35.4
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 5.4e-17 92.4 230 38.3
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.2e-16 91.3 241 36.9
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.6e-16 90.9 132 49.2
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 2.1e-16 90.5 240 36.7
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 2.1e-16 90.5 95 55.8
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 4.6e-16 89.4 229 37.6
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 4.6e-16 89.4 184 40.8
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 4.6e-16 89.4 227 37.4
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 6.0e-16 89.0 265 37.0
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 6.0e-16 89.0 96 55.2
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 6.0e-16 89.0 253 35.2
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 1.8e-15 87.4 181 38.1
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 2.3e-15 87.0 207 39.1
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 2.3e-15 87.0 238 35.3
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 2.3e-15 87.0 165 38.8
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 2.3e-15 87.0 208 39.9
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 2.3e-15 87.0 245 36.7
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 3.0e-15 86.7 213 39.9
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 3.0e-15 86.7 237 35.4
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 3.9e-15 86.3 162 43.2
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 5.1e-15 85.9 241 36.9
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 1.1e-14 84.7 242 36.0
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.1e-14 84.7 206 39.3
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 3.3e-14 83.2 253 31.6
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 4.3e-14 82.8 83 59.0
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 9.6e-14 81.6 82 58.5
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 9.6e-14 81.6 245 34.3
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 2.8e-13 80.1 96 54.2
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 2.4e-12 77.0 176 38.6
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 3.1e-12 76.6 226 38.5
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 2.0e-11 73.9 176 39.8
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 9.9e-11 71.6 104 48.1
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 9.9e-11 71.6 161 38.5
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 9.9e-11 71.6 161 38.5
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 1.3e-10 71.2 245 31.4
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.7e-10 70.9 221 34.8
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 2.2e-10 70.5 183 37.7
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 1.0e-07 61.6 150 38.7
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.8e-07 60.8 67 50.7
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.9e-07 59.7 68 48.5
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 6.7e-07 58.9 157 40.1
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 8.7e-07 58.5 114 35.1
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.1e-06 58.2 57 54.4
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.5e-06 57.8 62 51.6
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.9e-06 57.4 44 63.6
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 2.5e-06 57.0 73 46.6
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.3e-06 56.2 43 60.5


User provided reference genes

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