Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p15230 Brassica napus HOM05D009328 ORTHO05D008690 3.7e-230 801.2 407 100.0
BolC8t49153H Brassica oleracea HOM05D009328 ORTHO05D008690 3.7e-230 801.2 407 100.0
A08p32980 Brassica napus HOM05D009328 ORTHO05D008690 1.5e-202 709.5 410 90.0
BraA08t35218Z Brassica rapa HOM05D009328 ORTHO05D008690 1.3e-198 696.4 410 88.8
BcaB03g13206 Brassica carinata HOM05D009328 ORTHO05D008690 6.3e-190 667.5 417 85.4
Thhalv10007497m.g Eutrema salsugineum HOM05D009328 ORTHO05D008690 6.6e-163 577.8 489 68.3
Sp1g10800 Schrenkiella parvula HOM05D009328 ORTHO05D008690 7.6e-159 564.3 489 67.9
BraA06t24123Z Brassica rapa HOM05D009328 ORTHO05D008690 3.5e-148 528.9 437 69.6
BraA09t41754Z Brassica rapa HOM05D009328 ORTHO05D008690 7.8e-148 527.7 427 70.5
A06p09350 Brassica napus HOM05D009328 ORTHO05D008690 1.0e-147 527.3 439 69.9
A09p64080 Brassica napus HOM05D009328 ORTHO05D008690 8.7e-147 524.2 427 70.0
C08p47680 Brassica napus HOM05D009328 ORTHO05D008690 1.4e-141 506.9 428 69.4
C05p11050 Brassica napus HOM05D009328 ORTHO05D008690 4.2e-141 505.4 435 68.3
BolC8t52307H Brassica oleracea HOM05D009328 ORTHO05D008690 2.7e-140 502.7 427 69.3
BolC5t29847H Brassica oleracea HOM05D009328 ORTHO05D008690 6.0e-140 501.5 435 68.3
Carub.0001s1181 Capsella rubella HOM05D009328 ORTHO05D008690 3.9e-139 498.8 499 61.1
BcaC07g41729 Brassica carinata HOM05D009328 ORTHO05D008690 5.6e-138 495.0 440 67.0
BcaB02g06406 Brassica carinata HOM05D009328 ORTHO05D008690 1.6e-137 493.4 442 67.2
AT1G12120 Arabidopsis thaliana HOM05D009328 ORTHO05D008690 2.4e-136 489.6 489 63.0
AL1G23390 Arabidopsis lyrata HOM05D009328 ORTHO05D008690 4.0e-136 488.8 500 61.4
CARHR012480 Cardamine hirsuta HOM05D009328 ORTHO05D008690 7.4e-130 468.0 498 59.8
BcaB02g06408 Brassica carinata HOM05D009328 ORTHO05D008690 5.3e-120 435.3 418 63.6
Aa31LG1G2600 Aethionema arabicum HOM05D009328 ORTHO05D008690 3.0e-91 339.7 505 48.5
THA.LOC104818527 Tarenaya hassleriana HOM05D009328 ORTHO05D008690 1.2e-79 301.2 481 45.1
THA.LOC104823548 Tarenaya hassleriana HOM05D009328 ORTHO05D008690 1.7e-78 297.4 493 47.1
BcaNung05495 Brassica carinata HOM05D009328 ORTHO05D008690 3.4e-74 283.1 299 59.9
Sp2g02060 Schrenkiella parvula HOM05D009328 ORTHO05D008690 4.9e-65 252.7 441 43.1
Thhalv10024007m.g Eutrema salsugineum HOM05D009328 ORTHO05D008690 9.5e-53 211.8 417 41.2
AT1G62530 Arabidopsis thaliana HOM05D009328 ORTHO05D008690 2.4e-48 197.2 416 39.2
Carub.0002s0245 Capsella rubella HOM05D009328 ORTHO05D008690 1.6e-47 194.5 420 39.0
AL2G13340 Arabidopsis lyrata HOM05D009328 ORTHO05D008690 1.0e-38 165.2 222 51.4
Thecc.03G256000 Theobroma cacao HOM05D007929 ORTHO05D008690 1.3e-25 121.7 314 36.3
COL.COLO4_37202 Corchorus olitorius HOM05D007929 ORTHO05D008690 1.7e-25 121.3 302 37.7
Manes.01G077200 Manihot esculenta HOM05D007929 ORTHO05D008690 1.4e-24 118.2 254 39.4
Ciclev10019204m.g Citrus clementina HOM05D007929 ORTHO05D008690 7.9e-23 112.5 279 37.6
BcaNung05497 Brassica carinata HOM05D009328 ORTHO05D008690 2.3e-22 110.9 129 51.2
MD04G1085400 Malus domestica HOM05D007929 ORTHO05D008690 5.1e-22 109.8 278 35.3
Sabra03G0077700 Salix brachista HOM05D007929 ORTHO05D008690 2.5e-21 107.5 299 33.8
ClCG01G003880 Citrullus lanatus HOM05D007929 ORTHO05D008690 3.3e-21 107.1 176 41.5
CsaV3_5G004010 Cucumis sativus L. HOM05D007929 ORTHO05D008690 4.3e-21 106.7 176 42.6
Duzib084G1023 Durio zibethinus HOM05D007929 ORTHO05D008690 4.3e-21 106.7 274 35.0
MD06G1062900 Malus domestica HOM05D007929 ORTHO05D008690 9.6e-21 105.5 328 32.9
Manes.02G036501 Manihot esculenta HOM05D007929 ORTHO05D008690 9.6e-21 105.5 262 37.8
CiPaw.12G107500 Carya illinoinensis HOM05D007929 ORTHO05D008690 1.6e-20 104.8 271 34.3
Hma1.2p1_1720F.1_g299295 Hydrangea macrophylla HOM05D007929 ORTHO05D008690 1.6e-20 104.8 172 44.2
Hma1.2p1_1720F.1_g299300 Hydrangea macrophylla HOM05D007929 ORTHO05D008690 1.6e-20 104.8 172 44.2
vmacro14098 Vaccinium macrocarpon HOM05D007929 ORTHO05D008690 2.1e-20 104.4 241 36.1
Dinv21608 Davidia involucrata HOM05D007929 ORTHO05D008690 2.8e-20 104.0 171 43.3
Duzib068G0525 Durio zibethinus HOM05D007929 ORTHO05D008690 3.7e-20 103.6 274 34.7
Potri.003G112000 Populus trichocarpa HOM05D007929 ORTHO05D008690 4.8e-20 103.2 293 32.8
TWI60G0818 Tripterygium wilfordii HOM05D007929 ORTHO05D008690 4.8e-20 103.2 173 42.2
Haze_07866 Corylus avellana HOM05D007929 ORTHO05D008690 6.2e-20 102.8 177 45.8
Actinidia05192 Actinidia chinensis HOM05D007929 ORTHO05D008690 8.1e-20 102.4 148 45.9
Duzib205G1039 Durio zibethinus HOM05D007929 ORTHO05D008690 8.1e-20 102.4 281 35.2
Gohir.A08G171000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 1.4e-19 101.7 296 33.8
Rhsim07G0105500 Rhododendron simsii HOM05D007929 ORTHO05D008690 1.4e-19 101.7 173 42.8
Eucgr.E00452 Eucalyptus grandis HOM05D007929 ORTHO05D008690 1.8e-19 101.3 210 39.5
Cfa021312 Carpinus fangiana HOM05D007929 ORTHO05D008690 2.4e-19 100.9 189 41.8
Gorai.008G237100 Gossypium raimondii HOM05D007929 ORTHO05D008690 2.4e-19 100.9 314 31.2
Sabra01G0093400 Salix brachista HOM05D007929 ORTHO05D008690 2.4e-19 100.9 282 32.6
Sed0000260 Sechium edule HOM05D007929 ORTHO05D008690 2.4e-19 100.9 264 35.6
Dinv39112 Davidia involucrata HOM05D007929 ORTHO05D008690 4.0e-19 100.1 167 45.5
Gorai.004G199400 Gossypium raimondii HOM05D007929 ORTHO05D008690 4.0e-19 100.1 297 32.3
Hund14599 Selenicereus undatus HOM05D007929 ORTHO05D008690 4.0e-19 100.1 137 48.9
MELO3C005557.2 Cucumis melo HOM05D007929 ORTHO05D008690 5.3e-19 99.8 223 36.8
Gohir.A12G219000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 5.3e-19 99.8 314 31.8
FAN13G1817 Fragaria x ananassa HOM05D007929 ORTHO05D008690 6.9e-19 99.4 161 44.7
Gohir.D12G221300 Gossypium hirsutum HOM05D007929 ORTHO05D008690 1.5e-18 98.2 314 31.2
Potri.001G121200 Populus trichocarpa HOM05D007929 ORTHO05D008690 1.5e-18 98.2 283 33.2
QL12p013187 Quercus lobata HOM05D007929 ORTHO05D008690 1.5e-18 98.2 328 33.2
Prupe.5G074300 Prunus persica HOM05D007929 ORTHO05D008690 2.6e-18 97.4 174 45.4
FAN18G3609 Fragaria x ananassa HOM05D007929 ORTHO05D008690 3.4e-18 97.1 312 31.1
Gohir.D08G189300 Gossypium hirsutum HOM05D007929 ORTHO05D008690 4.5e-18 96.7 166 42.8
DCAR_027794 Daucus carota HOM05D007929 ORTHO05D008690 5.8e-18 96.3 198 38.4
RcHm_v2.0_Chr7g0202661 Rosa chinensis HOM05D007929 ORTHO05D008690 5.8e-18 96.3 252 32.1
Actinidia27458 Actinidia chinensis HOM05D007929 ORTHO05D008690 1.7e-17 94.7 177 42.9
FvH4_5g00200 Fragaria vesca HOM05D007929 ORTHO05D008690 1.7e-17 94.7 312 30.8
EL10Ac5g13019 Beta vulgaris HOM05D007929 ORTHO05D008690 2.9e-17 94.0 313 30.0
FAN08G2103 Fragaria x ananassa HOM05D007929 ORTHO05D008690 4.9e-17 93.2 324 31.5
Oeu029333.1 Olea europaea HOM05D007929 ORTHO05D008690 1.1e-16 92.0 159 43.4
FAN04G0968 Fragaria x ananassa HOM05D007929 ORTHO05D008690 1.9e-16 91.3 173 42.2
Lsat_1_v5_gn_6_1860 Lactuca sativa HOM05D007929 ORTHO05D008690 5.5e-16 89.7 189 43.4
Sopen08g027490 Solanum pennellii HOM05D007929 ORTHO05D008690 2.7e-15 87.4 195 35.4
AUR62039940 Chenopodium quinoa HOM05D007929 ORTHO05D008690 3.5e-15 87.0 337 28.8
AUR62007484 Chenopodium quinoa HOM05D007929 ORTHO05D008690 1.3e-14 85.1 299 30.4
ECA233G5449 Erigeron canadensis HOM05D007929 ORTHO05D008690 1.8e-14 84.7 212 39.6
Sc22g0000740 Simmondsia chinensis HOM05D007929 ORTHO05D008690 1.8e-14 84.7 352 28.4
HanXRQChr13g0394961 Helianthus annuus HOM05D007929 ORTHO05D008690 3.0e-14 84.0 216 36.1
PGSC0003DMG400004743 Solanum tuberosum HOM05D007929 ORTHO05D008690 6.7e-14 82.8 293 29.7
Solyc08g079030.4 Solanum lycopersicum HOM05D007929 ORTHO05D008690 8.7e-14 82.4 195 34.9
Peaxi162Scf00002g00920 Petunia axillaris HOM05D007929 ORTHO05D008690 1.5e-13 81.6 217 33.2
Nn6g34027 Nelumbo nucifera HOM05D007929 ORTHO05D008690 1.9e-13 81.3 287 31.4
Nn1g01073 Nelumbo nucifera HOM05D007929 ORTHO05D008690 2.5e-13 80.9 229 35.4
Ah.12g056550 Amaranthus hybridus HOM05D007929 ORTHO05D008690 1.3e-12 78.6 157 39.5
MBI04_g37591_MAGBIO Magnolia biondii HOM05D007929 ORTHO05D008690 1.3e-12 78.6 218 35.3
Nitab4.5_0009716g0010 Nicotiana tabacum HOM05D007929 ORTHO05D008690 1.3e-12 78.6 237 32.1
arahy.Tifrunner.gnm1.ann1.S80PKI Arachis hypogaea HOM05D007929 ORTHO05D008690 1.6e-12 78.2 214 36.0
CAN.G1217.13 Capsicum annuum HOM05D007929 ORTHO05D008690 1.1e-11 75.5 286 30.8
Migut.A00812 Erythranthe guttata HOM05D007929 ORTHO05D008690 1.1e-11 75.5 398 27.9
Nitab4.5_0000993g0050 Nicotiana tabacum HOM05D007929 ORTHO05D008690 1.4e-11 75.1 257 30.4
TAR374G1634 Trochodendron aralioides HOM05D007929 ORTHO05D008690 2.6e-10 70.9 269 28.3
Cc08_g12850 Coffea canephora HOM05D007929 ORTHO05D008690 5.8e-10 69.7 77 51.9
HPP92_007417 Vanilla planifolia HOM05D007929 ORTHO05D008690 1.4e-08 65.1 214 32.2
MSTRG.25535 Avicennia marina HOM05D007929 ORTHO05D008690 4.2e-08 63.5 242 28.9
HPP92_015027 Vanilla planifolia HOM05D007929 ORTHO05D008690 7.1e-08 62.8 137 37.2
CANSAT50G0006 Cannabis sativa HOM05D001536 ORTHO05D001442 6.1e-07 59.7 99 34.3
Aqoxy3G00455 Aquilegia oxysepala HOM05D001536 ORTHO05D001442 1.0e-06 58.9 95 35.8
Actinidia04855 Actinidia chinensis HOM05D001536 ORTHO05D001442 1.3e-06 58.5 107 37.4
GSVIVG01011481001 Vitis vinifera HOM05D001536 ORTHO05D001442 1.8e-06 58.2 92 39.1
Rhsim08G0149900 Rhododendron simsii HOM05D001536 ORTHO05D001442 2.3e-06 57.8 90 40.0
GSVIVG01007938001 Vitis vinifera HOM05D001536 ORTHO05D001442 2.3e-06 57.8 106 36.8
Duzib264G1081 Durio zibethinus HOM05D001536 ORTHO05D001442 3.9e-06 57.0 84 40.5
SGA_v2.0_scaffold63G21635 Striga asiatica HOM05D001536 ORTHO05D001442 3.9e-06 57.0 160 31.9
vmacro17582 Vaccinium macrocarpon HOM05D001536 ORTHO05D001442 3.9e-06 57.0 90 36.7
Actinidia09237 Actinidia chinensis HOM05D000001 ORTHO05D000003 8.7e-06 55.8 106 34.0
Cfa019289 Carpinus fangiana HOM05D001536 ORTHO05D001442 8.7e-06 55.8 82 40.2
Dinv11493 Davidia involucrata HOM05D001536 ORTHO05D001442 8.7e-06 55.8 180 31.7
Duzib147G0949 Durio zibethinus HOM05D001536 ORTHO05D001442 8.7e-06 55.8 82 39.0


User provided reference genes

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