Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 6.0e-283 976.9 501 100.0
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 6.0e-283 976.9 501 100.0
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 6.5e-269 930.2 501 94.2
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 1.9e-268 928.7 501 94.2
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 1.3e-266 922.5 501 95.6
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 6.5e-253 877.1 501 89.6
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 4.5e-246 854.4 501 87.2
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.3e-245 852.8 501 87.8
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.3e-245 852.8 501 87.8
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 4.2e-244 847.8 501 87.8
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 8.2e-240 833.6 501 86.4
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 1.9e-236 822.4 512 83.2
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 8.0e-235 817.0 501 84.0
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 1.2e-219 766.5 493 79.3
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 2.0e-209 732.6 503 73.2
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 3.5e-174 615.5 499 64.3
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 6.2e-171 604.7 494 62.1
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.2e-169 600.5 495 62.8
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 2.0e-169 599.7 501 62.7
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 4.5e-169 598.6 506 61.9
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 7.6e-169 597.8 507 61.7
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.2e-168 596.3 495 62.2
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 4.9e-168 595.1 495 62.4
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 7.1e-167 591.3 504 62.1
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.6e-166 590.1 505 62.0
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 6.0e-166 588.2 499 61.7
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 7.9e-166 587.8 503 61.0
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 5.1e-165 585.1 501 62.1
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 6.7e-165 584.7 498 60.6
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 1.5e-164 583.6 499 61.3
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 1.3e-163 580.5 507 58.8
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.3e-163 580.5 493 61.7
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 2.8e-163 579.3 507 59.8
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 4.8e-163 578.6 498 61.6
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.4e-162 577.0 509 59.7
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 3.1e-162 575.9 494 60.5
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 4.0e-162 575.5 491 61.3
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 3.4e-161 572.4 491 61.3
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 4.5e-161 572.0 345 83.2
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 5.8e-161 571.6 501 59.1
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 7.6e-161 571.2 495 60.8
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 2.9e-160 569.3 495 60.2
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.9e-159 566.6 488 60.5
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 3.2e-159 565.8 499 59.1
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 9.3e-159 564.3 495 60.4
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.6e-158 563.5 486 59.9
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 4.6e-158 562.0 498 59.4
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 3.0e-157 559.3 494 60.9
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.5e-156 557.0 509 58.2
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 1.5e-156 557.0 484 60.3
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 1.9e-156 556.6 507 58.0
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.9e-156 556.6 512 58.0
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 2.5e-156 556.2 505 57.4
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 5.6e-156 555.1 503 57.9
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 6.2e-155 551.6 505 57.0
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 2.4e-154 549.7 510 57.1
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 5.3e-154 548.5 505 56.8
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 9.0e-154 547.7 498 59.2
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.2e-153 547.4 499 59.5
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.2e-153 547.4 509 57.6
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 5.8e-153 545.0 492 58.3
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 5.8e-153 545.0 532 56.0
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.2e-152 543.1 497 58.1
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.9e-151 540.0 499 57.9
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 7.1e-151 538.1 510 56.7
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.2e-150 537.3 494 57.3
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 1.3e-149 533.9 493 58.2
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 3.0e-149 532.7 486 58.4
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 8.7e-149 531.2 487 58.5
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 7.4e-148 528.1 463 59.6
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 2.2e-147 526.6 487 57.5
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 8.2e-147 524.6 492 56.5
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 2.0e-145 520.0 580 52.2
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 8.5e-144 514.6 509 56.4
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 1.9e-143 513.5 513 53.6
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.2e-142 510.8 496 55.2
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 6.1e-142 508.4 448 60.0
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.0e-141 506.1 492 56.3
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 5.7e-140 501.9 487 55.2
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 7.4e-140 501.5 437 61.8
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 2.2e-139 500.0 454 58.1
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 3.7e-139 499.2 443 58.7
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.6e-137 493.0 488 55.3
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 2.2e-136 490.0 437 59.3
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 3.2e-135 486.1 493 55.2
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 3.2e-135 486.1 448 57.1
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 6.7e-133 478.4 393 63.1
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 8.8e-133 478.0 501 53.9
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-132 477.6 461 57.0
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 4.4e-132 475.7 444 56.5
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.4e-130 470.7 484 55.2
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 3.5e-129 466.1 388 62.4
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 7.7e-129 464.9 498 53.4
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.4e-127 460.7 364 63.5
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 1.8e-125 453.8 490 54.1
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.8e-114 417.2 490 50.2
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.6e-113 414.1 349 61.0
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 3.5e-113 412.9 257 84.8
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 5.9e-113 412.1 393 54.2
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.2e-111 406.4 360 58.1
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 2.7e-110 403.3 352 60.2
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 3.0e-109 399.8 504 45.0
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 7.0e-106 388.7 447 49.7
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 4.5e-105 386.0 502 45.2
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 5.9e-105 385.6 505 46.3
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 2.8e-102 376.7 343 59.2
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.3e-101 373.6 321 59.8
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 1.5e-100 370.9 576 42.2
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 5.7e-100 369.0 490 46.3
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 3.2e-98 363.2 336 56.0
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 9.2e-98 361.7 393 51.9
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 3.3e-95 353.2 493 43.2
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 2.0e-89 334.0 292 59.2
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 5.0e-88 329.3 344 53.2
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 9.5e-87 325.1 369 51.5
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 4.7e-86 322.8 367 47.4
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.3e-85 320.5 274 60.9
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 8.9e-85 318.5 288 56.2
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 5.8e-84 315.8 257 62.3
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.6e-78 297.7 253 62.8
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 2.8e-78 297.0 344 49.7
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.3e-72 278.1 244 58.6
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-69 268.1 244 57.8
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 9.9e-68 261.9 365 43.6
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.2e-66 256.5 172 69.2
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 4.8e-62 243.0 171 67.8
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-60 238.0 220 55.9
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 4.2e-58 229.9 219 52.5
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 9.0e-53 212.2 201 55.7
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 9.0e-53 212.2 266 50.0
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.8e-52 209.5 211 53.1
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-50 205.3 378 36.2
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.3e-48 197.6 171 59.6
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 1.1e-45 188.7 498 32.1
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 1.5e-44 184.9 125 72.8
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 2.6e-44 184.1 386 36.5
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-43 182.2 209 51.7
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 3.0e-40 170.6 204 48.5
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.5e-31 141.7 173 48.0
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.3e-31 140.6 155 47.7
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 3.7e-30 137.1 105 67.6
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 3.1e-29 134.0 481 28.1
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 4.2e-26 123.6 609 25.0
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 1.4e-24 118.6 95 61.1
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.0e-24 117.5 119 58.0
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 3.9e-24 117.1 158 41.8
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 5.9e-20 103.2 64 82.8
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-19 102.4 79 57.0
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-18 98.6 106 52.8
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 4.2e-18 97.1 106 51.9
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 9.4e-18 95.9 106 50.9
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.6e-17 94.0 79 57.0
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 4.7e-17 93.6 191 36.6
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 2.4e-13 81.3 87 44.8
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.0e-13 79.7 78 52.6
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 9.4e-10 69.3 83 50.6
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 8.0e-09 66.2 81 48.1
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.3e-08 64.7 40 72.5
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.7e-08 63.2 82 42.7
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 1.5e-07 62.0 44 72.7
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-06 58.9 88 38.6


User provided reference genes

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