Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 3.3e-144 515.0 256 100.0
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 6.1e-106 387.9 308 68.5
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 6.1e-106 387.9 315 67.3
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 2.2e-100 369.4 344 62.5
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 1.4e-97 360.1 343 60.1
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 1.5e-96 356.7 346 60.1
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 1.5e-96 356.7 343 59.5
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 2.0e-96 356.3 346 60.1
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 4.8e-95 351.7 348 59.8
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 2.4e-94 349.4 339 58.7
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 7.0e-94 347.8 348 59.2
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 8.6e-92 340.9 343 57.4
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 4.2e-91 338.6 339 58.4
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 7.2e-91 337.8 343 57.4
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 3.4e-88 328.9 303 62.4
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 9.8e-88 327.4 346 54.6
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 7.0e-78 294.7 342 49.4
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 2.7e-77 292.7 237 69.2
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 2.3e-73 279.6 280 59.3
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 1.1e-62 244.2 276 54.3
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 4.9e-55 218.8 340 40.0
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 7.1e-54 214.9 342 36.5
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 7.8e-53 211.5 317 37.2
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 1.0e-52 211.1 341 39.3
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 8.7e-52 208.0 344 37.5
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 8.7e-52 208.0 341 37.5
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 3.3e-51 206.1 345 36.8
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 5.6e-51 205.3 343 37.0
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 3.6e-50 202.6 342 37.1
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 1.4e-49 200.7 342 36.3
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 4.0e-49 199.1 339 36.9
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 5.3e-49 198.7 339 37.2
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 6.9e-49 198.4 343 35.0
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 1.2e-48 197.6 341 36.7
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.5e-48 197.2 335 35.2
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 3.4e-48 196.1 358 34.6
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 4.4e-48 195.7 304 38.2
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 4.4e-48 195.7 334 36.8
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 1.3e-47 194.1 327 37.6
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 1.4e-46 190.7 341 34.9
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.4e-46 190.7 330 36.1
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 1.9e-46 190.3 339 36.3
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 5.4e-46 188.7 343 35.0
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 1.2e-45 187.6 339 35.4
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.6e-45 187.2 344 34.0
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 1.6e-45 187.2 341 36.1
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.5e-45 186.0 336 34.8
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 3.5e-45 186.0 328 35.7
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 7.8e-45 184.9 340 34.4
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.0e-44 184.5 327 35.5
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 1.0e-44 184.5 337 36.5
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 2.3e-44 183.3 336 33.9
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 3.9e-44 182.6 341 34.6
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 3.9e-44 182.6 340 35.0
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 5.1e-44 182.2 339 33.0
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 8.7e-44 181.4 335 34.9
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.5e-43 180.6 344 34.9
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 4.3e-43 179.1 335 34.6
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 5.6e-43 178.7 327 34.9
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 7.3e-43 178.3 340 34.1
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 7.3e-43 178.3 327 34.9
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 9.6e-43 177.9 330 33.3
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 9.6e-43 177.9 338 32.8
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 1.6e-42 177.2 335 34.6
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.6e-42 177.2 340 34.7
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.6e-42 177.2 327 34.6
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 2.1e-42 176.8 350 34.3
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 2.8e-42 176.4 338 32.5
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.8e-42 176.4 350 34.0
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 2.8e-42 176.4 336 34.5
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 3.6e-42 176.0 349 35.0
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 4.8e-42 175.6 331 32.9
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 4.8e-42 175.6 347 33.1
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.8e-42 175.6 347 33.1
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 4.8e-42 175.6 333 33.3
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 6.2e-42 175.3 310 34.2
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.2e-42 175.3 342 34.2
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 6.2e-42 175.3 328 34.5
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 1.1e-41 174.5 327 34.6
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.4e-41 174.1 328 34.8
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 1.8e-41 173.7 340 34.1
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.8e-41 173.7 342 32.5
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 2.4e-41 173.3 342 34.5
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.3e-41 172.2 329 34.3
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 6.9e-41 171.8 336 33.3
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 9.0e-41 171.4 341 32.0
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 2.0e-40 170.2 340 31.8
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 2.0e-40 170.2 343 34.1
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.4e-40 169.5 340 32.9
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 3.4e-40 169.5 329 34.3
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 8.4e-39 164.9 340 32.6
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 1.4e-38 164.1 309 35.3
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 4.2e-38 162.5 336 32.7
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.2e-37 161.0 336 32.4
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 1.2e-37 161.0 318 31.1
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.6e-37 160.6 314 35.4
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.6e-37 160.6 316 32.9
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 6.0e-37 158.7 350 32.0
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.0e-36 157.9 341 33.1
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.3e-36 157.5 336 31.8
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.3e-36 156.8 341 32.8
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.1e-35 154.5 340 32.1
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 2.5e-35 153.3 335 30.1
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 7.4e-35 151.8 341 31.7
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 7.4e-35 151.8 305 32.8
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 1.4e-33 147.5 309 32.4
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 5.8e-32 142.1 377 30.5
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 1.7e-31 140.6 380 30.8
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 3.2e-30 136.3 349 28.7
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 7.1e-30 135.2 189 37.0
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 2.1e-29 133.7 354 28.2
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 2.6e-24 116.7 207 34.3
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 3.4e-24 116.3 336 26.5
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 3.8e-23 112.8 301 26.2
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 9.3e-22 108.2 322 26.4
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 3.0e-20 103.2 106 43.4
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 5.7e-19 99.0 272 27.6
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 7.4e-19 98.6 365 27.4
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 6.3e-18 95.5 309 27.5
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 6.3e-18 95.5 242 27.3
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 4.1e-17 92.8 241 27.4
BolC8t49084H Brassica oleracea HOM05D000013 ORTHO05D000011 6.9e-17 92.0 42 100.0
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 1.2e-16 91.3 379 24.0
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 5.1e-12 75.9 174 33.3
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 6.7e-12 75.5 71 46.5
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 8.2e-10 68.6 388 21.6
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 3.1e-09 66.6 116 30.2
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 9.1e-09 65.1 110 30.9
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 2.6e-08 63.5 84 44.0
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 4.5e-08 62.8 105 29.5
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 2.2e-07 60.5 53 39.6
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 8.5e-07 58.5 82 41.5


User provided reference genes

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