Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 2.5e-138 495.4 240 100.0
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 5.7e-138 494.2 240 99.6
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 1.1e-117 426.8 240 88.8
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 3.7e-113 411.8 240 85.4
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 3.0e-107 392.1 278 75.2
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 2.0e-106 389.4 278 74.5
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 2.6e-106 389.0 278 74.8
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 9.8e-106 387.1 278 74.5
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 1.3e-105 386.7 278 74.5
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 3.7e-105 385.2 253 77.9
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 3.7e-105 385.2 278 74.1
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 4.8e-105 384.8 278 74.5
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.3e-102 376.7 273 72.9
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 2.9e-102 375.6 278 70.9
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 3.8e-102 375.2 279 70.3
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 3.2e-101 372.1 278 70.5
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 3.2e-101 372.1 278 70.5
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 3.6e-100 368.6 278 70.1
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 1.9e-93 346.3 271 66.1
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 2.1e-92 342.8 277 64.3
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 4.7e-92 341.7 271 65.7
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 6.1e-92 341.3 271 65.7
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 8.0e-92 340.9 271 65.7
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.0e-91 340.5 271 65.7
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 8.9e-91 337.4 255 67.5
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.2e-90 337.0 271 65.3
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 2.0e-90 336.3 271 64.2
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 2.6e-90 335.9 271 64.9
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 2.6e-90 335.9 271 64.9
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 2.6e-90 335.9 271 64.2
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 2.6e-90 335.9 271 64.2
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 7.5e-90 334.3 271 63.8
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 3.7e-89 332.0 271 63.1
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 3.7e-89 332.0 271 64.6
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 4.9e-89 331.6 271 62.7
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 6.4e-89 331.3 277 61.7
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 8.3e-89 330.9 271 63.5
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 1.1e-88 330.5 271 63.1
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 3.2e-88 328.9 258 65.5
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 7.0e-88 327.8 271 63.1
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 9.2e-88 327.4 276 62.0
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 1.2e-87 327.0 271 63.1
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 1.2e-87 327.0 277 60.3
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 2.0e-87 326.2 271 62.4
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 2.0e-87 326.2 278 62.2
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 3.5e-87 325.5 276 61.2
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 3.5e-87 325.5 274 62.4
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 4.6e-87 325.1 277 62.1
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 4.6e-87 325.1 271 62.4
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 4.6e-87 325.1 271 62.7
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 7.8e-87 324.3 259 63.7
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 7.8e-87 324.3 271 62.7
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 7.8e-87 324.3 271 61.3
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.0e-86 323.9 280 60.4
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.0e-86 323.9 280 60.4
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.0e-86 323.9 274 62.0
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 1.0e-86 323.9 271 62.0
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 1.3e-86 323.6 271 61.6
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.3e-86 323.6 271 61.6
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 2.3e-86 322.8 268 62.3
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 3.0e-86 322.4 271 61.3
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 3.9e-86 322.0 271 63.5
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 5.0e-86 321.6 271 61.3
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 5.0e-86 321.6 276 61.2
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 5.0e-86 321.6 272 61.4
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 6.6e-86 321.2 271 61.6
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 8.6e-86 320.9 276 60.9
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 8.6e-86 320.9 277 61.0
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.5e-85 320.1 274 60.2
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 2.5e-85 319.3 274 60.9
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 3.3e-85 318.9 274 60.2
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 4.3e-85 318.5 271 61.3
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 4.3e-85 318.5 271 62.0
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 7.3e-85 317.8 271 60.9
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 9.5e-85 317.4 271 61.3
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 9.5e-85 317.4 271 61.3
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 1.2e-84 317.0 268 60.4
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 2.8e-84 315.8 271 61.3
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 2.8e-84 315.8 271 60.9
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 2.8e-84 315.8 271 59.8
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 4.7e-84 315.1 271 60.5
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 6.2e-84 314.7 271 59.8
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 1.5e-82 310.1 271 58.3
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 3.4e-82 308.9 271 59.0
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.8e-82 308.1 274 59.9
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.8e-82 308.1 274 59.9
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 7.5e-82 307.8 271 58.7
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 4.9e-81 305.1 263 58.9
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 6.4e-81 304.7 272 57.4
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 8.3e-81 304.3 305 54.8
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 1.4e-80 303.5 271 58.3
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 9.2e-80 300.8 272 57.0
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 2.0e-79 299.7 258 61.2
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 6.0e-79 298.1 303 54.5
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 7.8e-79 297.7 271 57.2
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 1.3e-78 297.0 301 53.5
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 3.0e-78 295.8 186 75.3
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.9e-77 293.1 271 56.5
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 7.3e-77 291.2 271 58.7
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 7.3e-77 291.2 185 73.5
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 2.8e-76 289.3 271 53.9
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 4.7e-76 288.5 271 55.0
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 4.7e-76 288.5 271 54.6
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 8.1e-76 287.7 271 52.0
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.4e-75 287.0 178 75.3
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 1.4e-75 287.0 179 74.9
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 3.1e-75 285.8 271 53.5
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.2e-74 283.9 262 55.0
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 1.5e-74 283.5 179 73.2
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 3.4e-74 282.3 289 54.7
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 5.8e-74 281.6 170 78.2
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 4.1e-72 275.4 271 57.2
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 5.4e-72 275.0 160 85.6
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 5.4e-72 275.0 179 72.1
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.2e-71 273.9 259 58.3
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 6.0e-71 271.6 254 61.4
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 6.0e-71 271.6 385 43.1
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 5.6e-69 265.0 179 69.8
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 1.2e-68 263.8 266 51.5
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 7.8e-63 244.6 156 73.1
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 2.3e-62 243.0 266 46.2
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.9e-62 242.3 251 53.0
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 5.1e-62 241.9 284 46.5
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 6.6e-62 241.5 269 47.2
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 1.4e-51 207.2 223 58.3
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 5.3e-51 205.3 272 40.1
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 1.5e-50 203.8 147 72.8
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 1.5e-50 203.8 231 55.0
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 1.8e-46 190.3 223 53.8
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 4.3e-45 185.7 185 51.4
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 3.1e-43 179.5 179 53.6
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 1.9e-37 160.2 92 80.4
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 6.2e-36 155.2 168 51.8
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 2.0e-34 150.2 233 41.2
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 1.4e-32 144.1 161 49.7
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 1.0e-30 137.9 99 67.7
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.8e-30 137.1 239 41.0
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 1.9e-24 117.1 67 76.1
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 2.5e-24 116.7 136 44.9
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 2.1e-23 113.6 136 44.1
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 7.7e-18 95.1 68 66.2
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 2.1e-15 87.0 63 63.5
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 8.2e-12 75.1 46 78.3
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 8.2e-12 75.1 82 51.2
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 2.0e-10 70.5 91 42.9


User provided reference genes

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