Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 8.1e-120 433.7 214 100.0
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 3.6e-112 408.3 210 95.7
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 8.2e-96 354.0 190 93.2
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 5.3e-87 324.7 213 77.5
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 3.2e-84 315.5 214 76.2
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 2.1e-75 286.2 202 74.8
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 1.8e-71 273.1 201 72.6
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 4.1e-71 271.9 215 67.9
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 4.1e-71 271.9 215 67.9
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 9.1e-71 270.8 221 62.9
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 3.5e-70 268.9 215 67.0
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 3.5e-70 268.9 215 67.0
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 7.2e-68 261.2 213 63.4
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 7.2e-68 261.2 213 63.4
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 6.1e-67 258.1 209 65.6
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 5.2e-66 255.0 195 65.1
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 5.7e-65 251.5 218 63.8
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 5.7e-65 251.5 195 65.6
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 7.5e-65 251.1 223 63.2
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 2.9e-61 239.2 214 62.1
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 4.8e-56 221.9 164 65.9
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 1.8e-55 219.9 205 55.6
BcaC07g38513 Brassica carinata HOM05D003268 ORTHO05D003719 1.8e-55 219.9 215 59.5
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 6.5e-53 211.5 199 53.8
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.5e-52 210.3 201 52.7
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 2.5e-52 209.5 212 53.8
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 1.5e-44 183.7 126 67.5
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 3.0e-42 176.0 202 48.5
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 1.8e-39 166.8 206 46.1
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 5.4e-39 165.2 188 50.0
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 3.0e-37 159.5 201 48.8
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 3.9e-37 159.1 188 48.9
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 6.6e-37 158.3 214 44.4
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 3.3e-36 156.0 199 49.7
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 2.1e-35 153.3 230 41.3
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 4.7e-35 152.1 188 47.9
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 4.0e-34 149.1 180 50.6
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 4.0e-34 149.1 180 50.6
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 5.2e-34 148.7 205 42.0
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 1.5e-33 147.1 189 45.5
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 2.6e-33 146.4 189 45.5
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 6.4e-32 141.7 187 43.9
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 9.2e-31 137.9 204 42.6
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 3.5e-30 136.0 170 45.3
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 1.0e-29 134.4 201 42.3
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 1.0e-29 134.4 190 40.0
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.3e-29 134.0 210 41.9
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 1.7e-29 133.7 160 47.5
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 1.7e-29 133.7 210 38.6
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 2.3e-29 133.3 167 47.3
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 3.9e-29 132.5 212 42.5
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 3.9e-29 132.5 212 42.5
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 3.9e-29 132.5 191 40.3
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 3.3e-28 129.4 213 39.9
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 7.3e-28 128.3 204 37.7
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 9.5e-28 127.9 204 37.7
BcaC07g41877 Brassica carinata HOM05D003268 ORTHO05D003719 1.6e-27 127.1 198 45.5
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 3.6e-27 125.9 177 44.1
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 4.7e-27 125.6 188 38.3
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 6.2e-27 125.2 206 36.4
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 8.1e-27 124.8 171 41.5
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 8.1e-27 124.8 164 43.9
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 1.1e-26 124.4 177 41.8
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.1e-26 124.4 179 40.2
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 1.4e-26 124.0 195 39.0
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 2.3e-26 123.2 194 41.2
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 4.0e-26 122.5 195 35.9
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 4.0e-26 122.5 214 40.7
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 5.2e-26 122.1 181 42.0
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 6.8e-26 121.7 208 39.4
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 6.8e-26 121.7 208 38.5
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 1.5e-25 120.6 182 40.1
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 1.5e-25 120.6 195 37.9
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 2.0e-25 120.2 169 42.0
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 3.4e-25 119.4 191 37.2
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 4.4e-25 119.0 209 37.8
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 4.4e-25 119.0 212 36.3
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 5.8e-25 118.6 169 39.6
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 9.8e-25 117.9 155 44.5
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.7e-24 117.1 181 39.2
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.2e-24 116.7 188 37.8
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 2.9e-24 116.3 177 39.0
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 3.7e-24 115.9 179 39.7
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 4.9e-24 115.5 185 41.6
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 4.9e-24 115.5 169 39.1
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 6.4e-24 115.2 193 36.8
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 6.4e-24 115.2 193 36.8
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 8.3e-24 114.8 196 35.7
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.1e-23 114.4 170 39.4
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 1.1e-23 114.4 178 39.3
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 1.1e-23 114.4 155 42.6
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 1.1e-23 114.4 155 42.6
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 1.9e-23 113.6 203 36.9
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 3.2e-23 112.8 185 37.8
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 3.2e-23 112.8 178 39.3
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 4.1e-23 112.5 210 34.3
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 4.1e-23 112.5 217 33.2
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 5.4e-23 112.1 164 40.9
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 5.4e-23 112.1 180 41.7
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 5.4e-23 112.1 189 39.2
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 5.4e-23 112.1 173 35.8
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 7.1e-23 111.7 214 36.4
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 7.1e-23 111.7 192 37.0
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 9.2e-23 111.3 188 37.8
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 9.2e-23 111.3 188 37.8
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.2e-22 110.9 188 37.8
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.2e-22 110.9 173 37.6
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 2.1e-22 110.2 197 36.0
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 2.7e-22 109.8 216 34.7
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 6.0e-22 108.6 175 37.7
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 1.0e-21 107.8 166 36.1
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 1.0e-21 107.8 207 35.3
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 1.0e-21 107.8 210 39.0
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 3.0e-21 106.3 178 37.6
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 3.9e-21 105.9 203 32.0
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 5.1e-21 105.5 186 37.6
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 3.3e-20 102.8 168 36.3
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 4.3e-20 102.4 192 34.4
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 5.6e-20 102.1 170 36.5
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 9.5e-20 101.3 168 36.3
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 9.5e-20 101.3 173 37.0
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 9.5e-20 101.3 201 34.8
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 1.2e-19 100.9 192 35.9
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 1.6e-19 100.5 180 35.0
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 3.6e-19 99.4 173 36.4
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 6.2e-19 98.6 172 38.4
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.1e-18 97.8 196 32.7
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 2.3e-18 96.7 171 35.7
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.3e-18 96.7 177 34.5
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 2.3e-18 96.7 185 32.4
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 5.2e-18 95.5 166 36.7
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 5.2e-18 95.5 211 33.6
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 5.2e-18 95.5 156 35.3
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 5.2e-18 95.5 165 38.2
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 6.8e-18 95.1 182 35.7
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 8.9e-18 94.7 164 33.5
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 2.0e-17 93.6 184 33.2
Aa31LG1G5600 Aethionema arabicum HOM05D003268 ORTHO05D003719 4.4e-17 92.4 109 46.8
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 7.6e-17 91.7 165 38.2
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 9.9e-17 91.3 185 32.4
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 9.9e-17 91.3 181 35.9
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.3e-16 90.9 151 36.4
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 2.2e-16 90.1 194 32.0
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 3.8e-16 89.4 135 37.8
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 4.9e-16 89.0 195 31.8
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 8.4e-16 88.2 171 34.5
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 1.1e-15 87.8 164 31.7
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 1.1e-15 87.8 166 36.7
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 1.1e-15 87.8 166 36.7
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.1e-15 87.8 157 32.5
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 1.1e-15 87.8 157 32.5
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 1.4e-15 87.4 179 34.1
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 3.2e-15 86.3 132 37.1
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 3.2e-15 86.3 132 36.4
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 3.2e-15 86.3 157 32.5
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.2e-14 84.3 177 32.8
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.6e-14 84.0 151 35.1
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 2.1e-14 83.6 174 32.8
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 2.7e-14 83.2 168 34.5
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 4.6e-14 82.4 170 33.5
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 7.8e-14 81.6 160 36.2
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 1.0e-13 81.3 140 37.9
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.3e-13 80.9 190 32.6
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 1.7e-13 80.5 176 34.7
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 2.3e-13 80.1 170 34.1
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 2.3e-13 80.1 170 34.1
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 3.0e-13 79.7 198 30.3
Actinidia17741 Actinidia chinensis HOM05D003268 ORTHO05D003719 6.6e-13 78.6 121 43.8
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 8.6e-13 78.2 173 32.9
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 2.5e-12 76.6 172 32.6
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 2.5e-12 76.6 172 32.6
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 2.5e-12 76.6 172 32.6
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 3.3e-12 76.3 174 32.2
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 7.3e-12 75.1 173 33.5
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 9.6e-12 74.7 188 33.5
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 1.2e-11 74.3 173 34.1
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 2.8e-11 73.2 181 32.6
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 6.2e-11 72.0 78 46.2
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 4.0e-10 69.3 176 31.2
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 4.0e-10 69.3 97 33.0
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 6.9e-10 68.6 189 27.5
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 8.9e-10 68.2 171 32.2
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 2.0e-09 67.0 171 32.2
Os05g0277200 Oryza sativa ssp. japonica HOM05D003268 ORTHO05D003719 1.4e-07 60.8 181 29.3


User provided reference genes

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