Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p12530 Brassica napus HOM05D007729 ORTHO05D009724 0.0e+00 1140.9 584 100.0
A08p34750 Brassica napus HOM05D007729 ORTHO05D009724 3.4e-293 1011.1 572 92.7
BolC8t48891H Brassica oleracea HOM05D007729 ORTHO05D009724 5.0e-289 997.3 534 97.4
BraA08t35386Z Brassica rapa HOM05D007729 ORTHO05D009724 4.5e-282 974.2 534 94.8
BcaC07g38483 Brassica carinata HOM05D007729 ORTHO05D009724 1.3e-276 956.1 538 93.7
Sp1g07780 Schrenkiella parvula HOM05D007729 ORTHO05D009724 2.4e-259 898.7 547 85.4
Thhalv10007209m.g Eutrema salsugineum HOM05D007729 ORTHO05D009724 2.4e-251 872.1 572 79.9
AL1G19670 Arabidopsis lyrata HOM05D007729 ORTHO05D009724 3.1e-246 855.1 550 80.0
Carub.0001s0852 Capsella rubella HOM05D007729 ORTHO05D009724 1.3e-244 849.7 547 80.8
Aa31LG1G6090 Aethionema arabicum HOM05D007729 ORTHO05D009724 3.1e-230 802.0 542 76.6
AT1G09195 Arabidopsis thaliana HOM05D007729 ORTHO05D009724 3.9e-225 785.0 499 80.8
THA.LOC104805912 Tarenaya hassleriana HOM05D007729 ORTHO05D009724 9.7e-216 753.8 537 72.8
CARHR009150 Cardamine hirsuta HOM05D007729 ORTHO05D009724 1.5e-163 580.5 366 83.1
Cpa.g.sc48.137 Carica papaya HOM05D007729 ORTHO05D009724 9.8e-160 567.8 551 58.3
Potri.005G020100 Populus trichocarpa HOM05D007729 ORTHO05D009724 2.4e-158 563.1 541 56.6
Ciclev10000704m.g Citrus clementina HOM05D007729 ORTHO05D009724 1.5e-155 553.9 559 55.3
Sabra05G0026100 Salix brachista HOM05D005361 ORTHO05D006518 2.1e-154 550.1 531 55.6
TAR365G0479 Trochodendron aralioides HOM05D007729 ORTHO05D009724 2.2e-151 540.0 555 56.2
HanXRQChr09g0268291 Helianthus annuus HOM05D007729 ORTHO05D009724 3.7e-151 539.3 538 53.9
Atru.chr2.143 Acer truncatum HOM05D007729 ORTHO05D009724 3.2e-150 536.2 571 53.9
Dinv24421 Davidia involucrata HOM05D007729 ORTHO05D009724 4.6e-149 532.3 538 55.6
Hma1.2p1_1320F.1_g275420 Hydrangea macrophylla HOM05D007729 ORTHO05D009724 1.7e-148 530.4 496 58.5
Actinidia16844 Actinidia chinensis HOM05D007729 ORTHO05D009724 1.4e-145 520.8 556 54.5
Lj9A208G24 Lonicera japonica HOM05D007729 ORTHO05D009724 1.4e-145 520.8 522 55.0
QL03p018088 Quercus lobata HOM05D007729 ORTHO05D009724 1.8e-145 520.4 554 54.3
ECA236G3528 Erigeron canadensis HOM05D007729 ORTHO05D009724 8.9e-145 518.1 533 53.8
Duzib177G0448 Durio zibethinus HOM05D007729 ORTHO05D009724 9.9e-144 514.6 570 52.3
Gorai.013G128200 Gossypium raimondii HOM05D007729 ORTHO05D009724 1.7e-143 513.8 543 54.7
Gohir.D13G114300 Gossypium hirsutum HOM05D007729 ORTHO05D009724 3.7e-143 512.7 543 54.5
Manes.09G175100 Manihot esculenta HOM05D007729 ORTHO05D009724 4.9e-143 512.3 542 53.9
Lsat_1_v5_gn_7_73440 Lactuca sativa HOM05D007729 ORTHO05D009724 1.2e-141 507.7 541 51.6
CANSAT54G0579 Cannabis sativa HOM05D007729 ORTHO05D009724 6.0e-141 505.4 549 52.8
RcHm_v2.0_Chr3g0456781 Rosa chinensis HOM05D007729 ORTHO05D009724 6.0e-141 505.4 552 52.0
Gohir.A13G111500 Gossypium hirsutum HOM05D007729 ORTHO05D009724 7.8e-141 505.0 543 53.4
FAN14G4369 Fragaria x ananassa HOM05D007729 ORTHO05D009724 1.7e-140 503.8 566 51.8
FvH4_6g07160 Fragaria vesca HOM05D007729 ORTHO05D009724 1.1e-139 501.1 510 54.9
FAN05G4184 Fragaria x ananassa HOM05D007729 ORTHO05D009724 2.5e-139 500.0 561 51.3
Nn4g25665 Nelumbo nucifera HOM05D007729 ORTHO05D009724 4.7e-138 495.7 550 51.8
GSVIVG01031211001 Vitis vinifera HOM05D007729 ORTHO05D009724 4.7e-138 495.7 563 48.8
TWI56G1038 Tripterygium wilfordii HOM05D007729 ORTHO05D009724 8.1e-138 495.0 538 51.5
Thecc.05G320400 Theobroma cacao HOM05D007729 ORTHO05D009724 2.4e-137 493.4 548 50.4
FAN09G4655 Fragaria x ananassa HOM05D007729 ORTHO05D009724 1.2e-136 491.1 566 51.1
COL.COLO4_04132 Corchorus olitorius HOM05D007729 ORTHO05D009724 9.3e-134 481.5 536 51.1
Nitab4.5_0000368g0330 Nicotiana tabacum HOM05D007729 ORTHO05D009724 2.7e-133 479.9 558 49.5
Oeu053698.1 Olea europaea HOM05D007729 ORTHO05D009724 2.3e-132 476.9 508 53.5
CSS0040240 Camellia sinensis var. sinensis HOM05D007729 ORTHO05D009724 3.0e-132 476.5 579 51.3
PGSC0003DMG400024735 Solanum tuberosum HOM05D007729 ORTHO05D009724 1.1e-131 474.6 559 48.7
Lalb_Chr02g0147931 Lupinus albus HOM05D007729 ORTHO05D009724 4.3e-131 472.6 490 55.1
Cc02_g34750 Coffea canephora HOM05D007729 ORTHO05D009724 1.6e-130 470.7 542 49.3
Peaxi162Scf00673g00025 Petunia axillaris HOM05D007729 ORTHO05D009724 1.6e-130 470.7 535 50.3
MBI18_g24956_MAGBIO Magnolia biondii HOM05D007729 ORTHO05D009724 2.8e-130 469.9 564 49.5
Sopen01g043770 Solanum pennellii HOM05D007729 ORTHO05D009724 4.8e-130 469.2 550 49.5
MSTRG.20396 Avicennia marina HOM05D007729 ORTHO05D009724 8.1e-130 468.4 552 49.6
Solyc01g100260.4 Solanum lycopersicum HOM05D007729 ORTHO05D009724 8.1e-130 468.4 550 49.1
SalBow7G3736 Salvia bowleyana HOM05D007729 ORTHO05D009724 1.4e-129 467.6 551 49.5
vmacro01545 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 3.1e-129 466.5 510 54.1
Nitab4.5_0006072g0050 Nicotiana tabacum HOM05D007729 ORTHO05D009724 4.0e-129 466.1 582 47.9
PGR031G2787 Punica granatum HOM05D007729 ORTHO05D009724 4.0e-129 466.1 554 50.4
Haze_04087 Corylus avellana HOM05D007729 ORTHO05D009724 6.9e-129 465.3 494 55.5
Migut.B00991 Erythranthe guttata HOM05D007729 ORTHO05D009724 3.4e-128 463.0 558 48.4
CAN.G1273.5 Capsicum annuum HOM05D007729 ORTHO05D009724 1.3e-127 461.1 558 47.3
PSO210G3025 Papaver somniferum HOM05D007729 ORTHO05D009724 3.2e-126 456.4 552 48.6
EL10Ac4g09861 Beta vulgaris HOM05D007729 ORTHO05D009724 4.2e-126 456.1 541 49.7
DCAR_021068 Daucus carota HOM05D007729 ORTHO05D009724 2.7e-125 453.4 531 49.0
DCAR_021070 Daucus carota HOM05D007729 ORTHO05D009724 2.7e-125 453.4 531 49.0
PSO761G0658 Papaver somniferum HOM05D007729 ORTHO05D009724 1.7e-124 450.7 554 48.6
AUR62000694 Chenopodium quinoa HOM05D007729 ORTHO05D009724 1.1e-118 431.4 543 47.7
CDE12G0453 Ceratophyllum demersum HOM05D007729 ORTHO05D009724 4.2e-118 429.5 540 46.3
SGA_v2.0_scaffold53G19323 Striga asiatica HOM05D007729 ORTHO05D009724 4.5e-112 409.5 456 49.6
AUR62005264 Chenopodium quinoa HOM05D007729 ORTHO05D009724 8.7e-108 395.2 551 44.8
ATR0706G084 Amborella trichopoda HOM05D007729 ORTHO05D009724 4.8e-106 389.4 557 42.4
Prupe.6G315600 Prunus persica HOM05D007729 ORTHO05D009724 2.6e-104 383.6 377 55.2
SEGI_22290 Sequoiadendron giganteum HOM05D007729 ORTHO05D009724 6.5e-95 352.4 558 38.7
Aqoxy2G02816 Aquilegia oxysepala HOM05D007729 ORTHO05D009724 3.6e-93 346.7 359 54.0
Pp3c5_5230 Physcomitrium patens HOM05D007729 ORTHO05D009724 2.6e-88 330.5 559 37.4
Pp3c6_24770 Physcomitrium patens HOM05D007729 ORTHO05D009724 2.2e-87 327.4 555 37.5
Hund21744 Selenicereus undatus HOM05D007729 ORTHO05D009724 1.1e-86 325.1 519 40.7
Atru.chr2.136 Acer truncatum HOM05D007729 ORTHO05D009724 3.2e-86 323.6 302 59.9
Sc16g0008910 Simmondsia chinensis HOM05D007729 ORTHO05D009724 1.8e-84 317.8 376 50.3
vmacro05864 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 3.9e-84 316.6 385 53.0
Duzib147G0321 Durio zibethinus HOM05D007729 ORTHO05D009724 2.4e-81 307.4 360 51.9
Pp3c27_4900 Physcomitrium patens HOM05D007729 ORTHO05D009724 3.5e-80 303.5 554 36.5
CARHR009140 Cardamine hirsuta HOM05D007729 ORTHO05D009724 1.0e-79 302.0 186 82.8
vmacro20072 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 2.6e-67 260.8 373 48.5
PRCOL_00006313 Prasinoderma coloniale HOM05D007729 ORTHO05D009724 8.5e-63 245.7 592 32.3
Haze_25193 Corylus avellana HOM05D007729 ORTHO05D009724 7.8e-40 169.5 183 56.3
Aqoxy2G02815 Aquilegia oxysepala HOM05D007729 ORTHO05D009724 4.7e-37 160.2 162 53.1
Haze_15474 Corylus avellana HOM05D000683 ORTHO05D000507 8.9e-28 129.4 116 60.3
Haze_25604 Corylus avellana HOM05D007729 ORTHO05D009724 6.2e-21 106.7 121 51.2
MD12G1208200 Malus domestica HOM05D007729 ORTHO05D009724 3.8e-18 97.4 119 45.4
CBR_g1071 Chara braunii HOM05D036030 ORTHO05D009724 1.0e-07 62.8 168 29.8


User provided reference genes

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