Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38435 Brassica carinata HOM05D002184 ORTHO05D017527 5.8e-71 270.8 136 100.0
C08p12020 Brassica napus HOM05D002184 ORTHO05D017527 5.8e-71 270.8 136 100.0
C08p11950 Brassica napus HOM05D002184 ORTHO05D017527 1.9e-69 265.8 136 99.3
BcaC07g38424 Brassica carinata HOM05D002184 ORTHO05D017527 8.6e-67 256.9 137 96.4
C08p11860 Brassica napus HOM05D002184 ORTHO05D017527 8.6e-67 256.9 137 96.4
BcaC07g38427 Brassica carinata HOM05D002184 ORTHO05D017527 1.6e-65 252.7 137 94.2
C08p11900 Brassica napus HOM05D002184 ORTHO05D017527 1.6e-65 252.7 137 94.2
BraA08t35433Z Brassica rapa HOM05D002184 ORTHO05D002379 1.8e-48 196.1 130 78.5
A08p35250 Brassica napus HOM05D000444 ORTHO05D002379 9.0e-48 193.7 130 77.7
Thhalv10007986m.g Eutrema salsugineum HOM05D002184 ORTHO05D002379 5.3e-40 167.9 127 74.0
Carub.0001s0772 Capsella rubella HOM05D002184 ORTHO05D002379 9.0e-40 167.2 126 73.8
BcaB03g13341 Brassica carinata HOM05D002184 ORTHO05D002379 1.9e-37 159.5 131 71.0
Sp1g07010 Schrenkiella parvula HOM05D002184 ORTHO05D002379 4.2e-37 158.3 126 69.8
AL1G18780 Arabidopsis lyrata HOM05D002184 ORTHO05D002379 7.1e-37 157.5 129 71.3
A09p65940 Brassica napus HOM05D002184 ORTHO05D002379 4.8e-33 144.8 125 66.4
BcaC07g41947 Brassica carinata HOM05D002184 ORTHO05D002379 4.0e-32 141.7 125 65.6
C08p50040 Brassica napus HOM05D002184 ORTHO05D002379 4.0e-32 141.7 125 65.6
BraA09t41938Z Brassica rapa HOM05D002184 ORTHO05D002379 4.0e-32 141.7 125 65.6
C08p03610 Brassica napus HOM05D002184 ORTHO05D002379 2.2e-30 136.0 125 65.6
BcaB01g00485 Brassica carinata HOM05D002184 ORTHO05D017527 1.9e-29 132.9 73 91.8
BolC8t47164H Brassica oleracea HOM05D002184 ORTHO05D002379 1.9e-29 132.9 125 64.0
BolC8t50312H Brassica oleracea HOM05D002184 ORTHO05D017527 1.9e-29 132.9 73 91.8
AT1G08370 Arabidopsis thaliana HOM05D002184 ORTHO05D002379 2.5e-29 132.5 132 64.4
C05p06510 Brassica napus HOM05D002184 ORTHO05D002379 5.5e-29 131.3 126 61.1
BcaC07g42531 Brassica carinata HOM05D002184 ORTHO05D002379 6.0e-28 127.9 125 61.6
A06p05390 Brassica napus HOM05D002184 ORTHO05D002379 1.1e-24 117.1 135 52.6
BraA06t23748Z Brassica rapa HOM05D002184 ORTHO05D002379 1.1e-24 117.1 135 52.6
Aa31sc375G10 Aethionema arabicum HOM05D002184 ORTHO05D002379 1.6e-20 103.2 126 54.0
CARHR008250 Cardamine hirsuta HOM05D002184 ORTHO05D002379 1.8e-16 89.7 143 44.8
BcaB07g34084 Brassica carinata HOM05D002184 ORTHO05D002379 5.5e-13 78.2 85 57.6
QL01p011868 Quercus lobata HOM05D002184 ORTHO05D002379 1.2e-12 77.0 123 43.1
CSS0012979 Camellia sinensis var. sinensis HOM05D002184 ORTHO05D002379 2.3e-11 72.8 124 45.2
Thecc.09G279100 Theobroma cacao HOM05D002184 ORTHO05D002379 2.0e-10 69.7 123 40.7
Nitab4.5_0003068g0010 Nicotiana tabacum HOM05D002184 ORTHO05D002379 4.4e-10 68.6 126 41.3
Medtr2g086970 Medicago truncatula HOM05D002184 ORTHO05D002379 1.3e-09 67.0 123 41.5
Nn8g41248 Nelumbo nucifera HOM05D002184 ORTHO05D002379 1.3e-09 67.0 125 43.2
Nitab4.5_0000937g0100 Nicotiana tabacum HOM05D002184 ORTHO05D002379 1.3e-09 67.0 123 38.2
Cfa009989 Carpinus fangiana HOM05D002184 ORTHO05D002379 6.3e-09 64.7 124 40.3
Peaxi162Scf00345g01029 Petunia axillaris HOM05D002184 ORTHO05D002379 8.2e-09 64.3 125 40.8
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 3.1e-08 62.4 124 41.1
Rhsim03G0069800 Rhododendron simsii HOM05D002184 ORTHO05D002379 5.3e-08 61.6 130 41.5
Gorai.004G011200 Gossypium raimondii HOM05D002184 ORTHO05D002379 7.0e-08 61.2 125 42.4
Sopen06g030630 Solanum pennellii HOM05D002184 ORTHO05D002379 7.0e-08 61.2 125 38.4
TWI79G1089 Tripterygium wilfordii HOM05D002184 ORTHO05D002379 7.0e-08 61.2 118 39.8
Psat5g257840 Pisum sativum HOM05D002184 ORTHO05D002379 9.1e-08 60.8 124 39.5
Solyc06g074210.3 Solanum lycopersicum HOM05D002184 ORTHO05D002379 9.1e-08 60.8 125 38.4
PGSC0003DMG400005889 Solanum tuberosum HOM05D002184 ORTHO05D002379 9.1e-08 60.8 124 38.7
Potri.009G160200 Populus trichocarpa HOM05D002184 ORTHO05D002379 1.2e-07 60.5 124 38.7
GSVIVG01033895001 Vitis vinifera HOM05D002184 ORTHO05D002379 1.2e-07 60.5 105 45.7
Hma1.2p1_0820F.1_g224070 Hydrangea macrophylla HOM05D002184 ORTHO05D002379 2.0e-07 59.7 120 45.8
Gohir.A08G006700 Gossypium hirsutum HOM05D002184 ORTHO05D002379 3.4e-07 58.9 129 41.9
Gohir.D08G016900 Gossypium hirsutum HOM05D002184 ORTHO05D002379 3.4e-07 58.9 125 41.6
Actinidia35472 Actinidia chinensis HOM05D002184 ORTHO05D002379 4.5e-07 58.5 122 43.4
CAN.G919.40 Capsicum annuum HOM05D002184 ORTHO05D002379 1.0e-06 57.4 126 38.1
Migut.D02429 Erythranthe guttata HOM05D002184 ORTHO05D002379 1.3e-06 57.0 115 41.7
Haze_23349 Corylus avellana HOM05D002184 ORTHO05D002379 1.7e-06 56.6 124 35.5
Nitab4.5_0005472g0070 Nicotiana tabacum HOM05D002184 ORTHO05D002379 1.7e-06 56.6 123 35.8
SGA_v2.0_scaffold100G29605 Striga asiatica HOM05D002184 ORTHO05D002379 1.7e-06 56.6 125 35.2
MSTRG.21028 Avicennia marina HOM05D002184 ORTHO05D002379 2.9e-06 55.8 114 39.5
CSS0017670 Camellia sinensis var. sinensis HOM05D002184 ORTHO05D002379 6.5e-06 54.7 129 41.1
Duzib170G0847 Durio zibethinus HOM05D002184 ORTHO05D002379 6.5e-06 54.7 123 37.4
Cc01_g08840 Coffea canephora HOM05D002184 ORTHO05D002379 8.5e-06 54.3 112 39.3


User provided reference genes

Program Settings