Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p12000 Brassica napus HOM05D041361 ORTHO05D101620 1.6e-45 185.7 87 100.0
C08p11790 Brassica napus HOM05D041361 ORTHO05D100908 1.7e-44 182.2 87 97.7
C08p11930 Brassica napus HOM05D041361 ORTHO05D096708 9.5e-43 176.4 87 95.4
C08p11890 Brassica napus HOM05D000244 ORTHO05D039224 3.7e-23 111.3 53 94.3
BcaC07g38426 Brassica carinata HOM05D000244 ORTHO05D039224 2.6e-16 88.6 103 54.4
BcaB07g33276 Brassica carinata HOM05D000244 ORTHO05D000179 6.2e-10 67.4 84 48.8
BcaC02g07215 Brassica carinata HOM05D000244 ORTHO05D000179 3.4e-08 61.6 83 48.2
C04p69980 Brassica napus HOM05D000244 ORTHO05D000179 3.4e-08 61.6 83 48.2
BolC4t28498H Brassica oleracea HOM05D000244 ORTHO05D000179 3.4e-08 61.6 83 48.2
AL4G41570 Arabidopsis lyrata HOM05D000244 ORTHO05D000179 5.8e-08 60.8 83 48.2
AT2G42940 Arabidopsis thaliana HOM05D000244 ORTHO05D000179 5.8e-08 60.8 83 48.2
A03p23880 Brassica napus HOM05D000244 ORTHO05D000865 5.8e-08 60.8 83 48.2
C03p28500 Brassica napus HOM05D000244 ORTHO05D000865 5.8e-08 60.8 83 48.2
BolC3t15216H Brassica oleracea HOM05D000244 ORTHO05D000865 5.8e-08 60.8 83 48.2
BraA03t11604Z Brassica rapa HOM05D000244 ORTHO05D000865 5.8e-08 60.8 83 48.2
Carub.0004s2541 Capsella rubella HOM05D000244 ORTHO05D000179 5.8e-08 60.8 83 48.2
Thhalv10017103m.g Eutrema salsugineum HOM05D000244 ORTHO05D000179 5.8e-08 60.8 83 48.2
Sp4g25070 Schrenkiella parvula HOM05D000244 ORTHO05D000179 9.9e-08 60.1 83 48.2
THA.LOC104802280 Tarenaya hassleriana HOM05D000244 ORTHO05D000179 9.9e-08 60.1 83 47.0
A04p32460 Brassica napus HOM05D000244 ORTHO05D000179 1.3e-07 59.7 82 47.6
BraA04t18698Z Brassica rapa HOM05D000244 ORTHO05D000179 1.3e-07 59.7 82 47.6
CARHR138000 Cardamine hirsuta HOM05D000244 ORTHO05D000179 2.2e-07 58.9 83 48.2
THA.LOC104803277 Tarenaya hassleriana HOM05D000244 ORTHO05D000179 3.8e-07 58.2 83 47.0
Aa31LG1G24690 Aethionema arabicum HOM05D000244 ORTHO05D000179 6.4e-07 57.4 81 46.9
A05p03460 Brassica napus HOM05D000244 ORTHO05D000179 6.4e-07 57.4 83 45.8
C04p04040 Brassica napus HOM05D000244 ORTHO05D000179 6.4e-07 57.4 83 45.8
BolC4t22043H Brassica oleracea HOM05D000244 ORTHO05D000179 6.4e-07 57.4 83 45.8
BraA05t19332Z Brassica rapa HOM05D000244 ORTHO05D000179 6.4e-07 57.4 83 45.8
Cpa.g.sc50.90 Carica papaya HOM05D000244 ORTHO05D000179 8.4e-07 57.0 81 45.7
Cfa021923 Carpinus fangiana HOM05D000244 ORTHO05D000179 8.4e-07 57.0 82 45.1
Ca_06280_v3 Cicer arietinum L. HOM05D000244 ORTHO05D000179 8.4e-07 57.0 81 46.9
Ca_30613_v3 Cicer arietinum L. HOM05D000244 ORTHO05D000179 8.4e-07 57.0 81 46.9
Medtr5g091630 Medicago truncatula HOM05D000244 ORTHO05D000179 8.4e-07 57.0 81 46.9
Psat2g016040 Pisum sativum HOM05D000244 ORTHO05D000179 8.4e-07 57.0 81 46.9
TPR.G12653 Trifolium pratense HOM05D000244 ORTHO05D000179 8.4e-07 57.0 81 46.9
Actinidia11219 Actinidia chinensis HOM05D000244 ORTHO05D000179 1.4e-06 56.2 81 44.4
Actinidia06120 Actinidia chinensis HOM05D000244 ORTHO05D000179 1.9e-06 55.8 81 44.4
LjContig00310g0022124 Lotus japonicus HOM05D000244 ORTHO05D000179 1.9e-06 55.8 81 45.7
BcaB06g29272 Brassica carinata HOM05D000244 ORTHO05D000179 2.4e-06 55.5 83 45.8
Atru.chr4.245 Acer truncatum HOM05D000244 ORTHO05D000179 3.2e-06 55.1 81 44.4
CANSAT64G2076 Cannabis sativa HOM05D000244 ORTHO05D000179 3.2e-06 55.1 81 44.4
CiPaw.03G189700 Carya illinoinensis HOM05D000244 ORTHO05D000179 3.2e-06 55.1 81 44.4
FvH4_6g38311 Fragaria vesca HOM05D000244 ORTHO05D000179 3.2e-06 55.1 81 44.4
FAN09G4435 Fragaria x ananassa HOM05D000244 ORTHO05D002303 3.2e-06 55.1 81 44.4
MD09G1151100 Malus domestica HOM05D000244 ORTHO05D000179 3.2e-06 55.1 81 44.4
MD17G1138700 Malus domestica HOM05D000244 ORTHO05D000179 3.2e-06 55.1 81 44.4
Prupe.3G173700 Prunus persica HOM05D000244 ORTHO05D000179 3.2e-06 55.1 81 44.4
RcHm_v2.0_Chr2g0151621 Rosa chinensis HOM05D000244 ORTHO05D000179 3.2e-06 55.1 81 44.4
vmacro15692 Vaccinium macrocarpon HOM05D000244 ORTHO05D000179 3.2e-06 55.1 81 43.2
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 4.2e-06 54.7 81 43.2
Duzib147G1473 Durio zibethinus HOM05D000244 ORTHO05D000179 4.2e-06 54.7 81 43.2
Thecc.01G162800 Theobroma cacao HOM05D000244 ORTHO05D000179 4.2e-06 54.7 81 43.2
Rhsim06G0115400 Rhododendron simsii HOM05D000001 ORTHO05D006238 5.4e-06 54.3 81 43.2
arahy.Tifrunner.gnm1.ann1.288B0N Arachis hypogaea HOM05D000244 ORTHO05D000179 7.1e-06 53.9 81 44.4
arahy.Tifrunner.gnm1.ann1.CHK6WN Arachis hypogaea HOM05D000244 ORTHO05D000179 7.1e-06 53.9 81 44.4
CAN.G585.31 Capsicum annuum HOM05D000244 ORTHO05D000179 9.3e-06 53.5 81 42.0
Manes.01G130200 Manihot esculenta HOM05D000244 ORTHO05D000179 9.3e-06 53.5 81 42.0
Nitab4.5_0003903g0020 Nicotiana tabacum HOM05D000244 ORTHO05D000179 9.3e-06 53.5 81 42.0
Nitab4.5_0007842g0030 Nicotiana tabacum HOM05D000244 ORTHO05D000179 9.3e-06 53.5 81 42.0
Peaxi162Scf00111g00015 Petunia axillaris HOM05D000244 ORTHO05D000179 9.3e-06 53.5 81 42.0
QL08p044285 Quercus lobata HOM05D000244 ORTHO05D000179 9.3e-06 53.5 81 43.2
Solyc07g056300.1 Solanum lycopersicum HOM05D000244 ORTHO05D000179 9.3e-06 53.5 81 42.0
Sopen07g029660 Solanum pennellii HOM05D000244 ORTHO05D000179 9.3e-06 53.5 81 42.0
PGSC0003DMG400017302 Solanum tuberosum HOM05D000244 ORTHO05D000179 9.3e-06 53.5 81 42.0


User provided reference genes

Program Settings