Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 3.3e-53 211.5 107 100.0
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 2.1e-52 208.8 107 99.1
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 1.4e-48 196.1 107 93.5
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 3.5e-47 191.4 104 93.3
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 1.2e-34 149.8 90 88.9
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 6.4e-33 144.1 79 88.6
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.1e-32 143.3 79 87.3
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 7.1e-32 140.6 79 84.8
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 1.2e-31 139.8 78 85.9
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 2.1e-31 139.0 79 83.5
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 2.1e-31 139.0 79 83.5
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 2.1e-31 139.0 79 83.5
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 2.7e-31 138.7 78 84.6
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 3.5e-31 138.3 79 82.3
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 3.5e-31 138.3 79 82.3
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 3.0e-30 135.2 78 82.1
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 3.9e-30 134.8 79 79.7
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 9.6e-29 130.2 81 72.8
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 3.6e-28 128.3 79 73.4
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 1.4e-27 126.3 79 81.0
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 2.4e-27 125.6 80 70.0
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 2.4e-27 125.6 81 70.4
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 4.0e-27 124.8 82 70.7
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 5.3e-27 124.4 82 69.5
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 6.9e-27 124.0 81 69.1
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 6.9e-27 124.0 81 69.1
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 6.9e-27 124.0 81 70.4
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 9.0e-27 123.6 81 69.1
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.2e-26 123.2 80 68.8
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 1.2e-26 123.2 81 67.9
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 2.0e-26 122.5 81 69.1
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.0e-26 122.5 81 70.4
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.6e-26 122.1 81 69.1
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.6e-26 122.1 81 69.1
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 5.8e-26 120.9 81 66.7
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 7.6e-26 120.6 80 68.8
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 7.6e-26 120.6 81 69.1
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 7.6e-26 120.6 79 67.1
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 9.9e-26 120.2 87 64.4
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.3e-25 119.8 82 65.9
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 1.3e-25 119.8 81 69.1
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.3e-25 119.8 79 70.9
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 1.3e-25 119.8 81 66.7
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.3e-25 119.8 81 66.7
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 1.7e-25 119.4 81 66.7
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 1.7e-25 119.4 81 67.9
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 1.7e-25 119.4 81 67.9
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 1.7e-25 119.4 81 66.7
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.7e-25 119.4 80 66.2
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 2.2e-25 119.0 82 65.9
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 2.9e-25 118.6 79 67.1
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 2.9e-25 118.6 81 66.7
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.8e-25 118.2 81 67.9
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 4.9e-25 117.9 79 65.8
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 4.9e-25 117.9 81 67.9
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.9e-25 117.9 81 67.9
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.9e-25 117.9 81 67.9
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 4.9e-25 117.9 74 70.3
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 4.9e-25 117.9 81 65.4
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 6.4e-25 117.5 81 64.2
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.4e-25 117.5 81 67.9
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 6.4e-25 117.5 87 60.9
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 6.4e-25 117.5 74 68.9
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 8.4e-25 117.1 82 64.6
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 8.4e-25 117.1 78 65.4
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 8.4e-25 117.1 74 67.6
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-24 116.7 81 66.7
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 1.1e-24 116.7 79 69.6
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 1.1e-24 116.7 80 67.5
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.4e-24 116.3 87 60.9
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.4e-24 116.3 81 67.9
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 1.9e-24 115.9 87 63.2
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 1.9e-24 115.9 81 66.7
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 1.9e-24 115.9 81 65.4
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.9e-24 115.9 81 65.4
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 2.4e-24 115.5 81 64.2
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 2.4e-24 115.5 81 65.4
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 2.4e-24 115.5 81 64.2
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 2.4e-24 115.5 81 64.2
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.2e-24 115.2 81 64.2
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 4.2e-24 114.8 81 64.2
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 4.2e-24 114.8 80 65.0
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 7.1e-24 114.0 81 64.2
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 7.1e-24 114.0 79 67.1
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 7.1e-24 114.0 81 65.4
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 9.3e-24 113.6 87 59.8
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.2e-23 113.2 81 64.2
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.6e-23 112.8 81 64.2
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 2.1e-23 112.5 78 64.1
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 6.0e-23 110.9 77 64.9
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 6.0e-23 110.9 81 63.0
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 6.0e-23 110.9 87 56.3
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 7.9e-23 110.5 81 60.5
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 7.9e-23 110.5 87 59.8
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 7.9e-23 110.5 87 58.6
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 7.9e-23 110.5 72 68.1
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.3e-22 109.8 78 61.5
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.3e-22 109.8 73 68.5
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 1.3e-22 109.8 81 64.2
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.8e-22 109.4 87 58.6
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 1.8e-22 109.4 87 56.3
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 3.0e-22 108.6 74 60.8
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 3.0e-22 108.6 82 56.1
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 5.1e-22 107.8 73 64.4
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 5.1e-22 107.8 81 59.3
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 5.1e-22 107.8 81 59.3
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 6.7e-22 107.5 81 59.3
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 3.3e-21 105.1 80 58.8
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 4.0e-19 98.2 79 51.9
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 5.8e-18 94.4 79 55.7
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 5.8e-18 94.4 79 50.6
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 9.9e-18 93.6 79 53.2
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 1.9e-16 89.4 82 47.6
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 7.1e-16 87.4 70 61.4
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 1.8e-14 82.8 79 43.0
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.8e-14 82.8 77 48.1
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 6.7e-14 80.9 78 43.6
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.9e-13 79.3 87 55.2
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 5.6e-13 77.8 76 50.0
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 8.2e-12 73.9 61 54.1
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 6.9e-11 70.9 73 41.1
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 1.2e-10 70.1 79 45.6
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 5.8e-10 67.8 39 74.4
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.3e-09 66.6 51 62.7
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.9e-08 62.8 39 66.7
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 7.1e-08 60.8 42 64.3
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.2e-07 60.1 34 76.5


User provided reference genes

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