Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 3.7e-76 288.1 142 100.0
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 3.7e-76 288.1 142 100.0
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 3.7e-76 288.1 142 100.0
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 2.6e-74 282.0 142 97.9
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 3.4e-74 281.6 142 97.9
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 2.7e-71 271.9 142 93.7
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 5.3e-67 257.7 138 89.1
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 5.3e-67 257.7 138 89.1
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.5e-66 256.1 146 86.3
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 5.8e-66 254.2 138 88.4
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 5.8e-66 254.2 138 88.4
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 5.8e-66 254.2 138 88.4
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.3e-65 253.1 146 84.9
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 3.8e-65 251.5 130 92.3
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 2.7e-63 245.4 142 84.5
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 2.5e-61 238.8 142 81.0
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 1.6e-60 236.1 159 75.5
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 5.9e-58 227.6 140 80.0
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.9e-57 225.3 132 81.1
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 3.6e-55 218.4 145 73.8
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.5e-53 213.0 134 75.4
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 2.5e-53 212.2 145 71.0
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 3.3e-53 211.8 143 68.5
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 5.7e-53 211.1 134 73.1
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 1.3e-52 209.9 151 67.5
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.1e-51 206.8 132 74.2
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 4.1e-51 204.9 134 70.9
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 4.1e-51 204.9 146 67.8
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 9.1e-51 203.8 136 70.6
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 1.5e-50 203.0 138 71.7
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.5e-50 203.0 138 70.3
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.5e-50 203.0 138 70.3
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 3.4e-50 201.8 137 65.7
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.4e-50 201.8 138 69.6
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 4.5e-50 201.4 138 69.6
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 5.9e-50 201.1 136 70.6
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 7.7e-50 200.7 138 68.1
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.0e-49 200.3 132 68.9
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.0e-49 200.3 136 66.2
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.7e-49 199.5 132 66.7
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 3.8e-49 198.4 147 64.6
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 3.8e-49 198.4 132 69.7
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.8e-49 198.4 135 69.6
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 5.0e-49 198.0 142 68.3
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 5.0e-49 198.0 136 65.4
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 6.5e-49 197.6 134 69.4
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 6.5e-49 197.6 138 68.8
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 6.5e-49 197.6 138 68.1
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 8.5e-49 197.2 126 71.4
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 1.9e-48 196.1 136 64.7
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 2.5e-48 195.7 134 67.9
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 3.2e-48 195.3 135 68.1
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 3.2e-48 195.3 132 69.7
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 3.2e-48 195.3 136 67.6
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 3.2e-48 195.3 136 64.0
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 4.2e-48 194.9 136 64.0
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 5.5e-48 194.5 138 65.2
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 9.4e-48 193.7 132 67.4
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 9.4e-48 193.7 129 67.4
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.2e-47 193.4 126 70.6
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.2e-47 193.4 130 69.2
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 1.2e-47 193.4 130 69.2
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.6e-47 193.0 132 67.4
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 1.6e-47 193.0 134 66.4
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 1.6e-47 193.0 136 63.2
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 3.6e-47 191.8 148 63.5
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 4.6e-47 191.4 129 65.9
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 6.1e-47 191.0 136 64.7
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.1e-47 191.0 128 67.2
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.1e-47 191.0 131 67.2
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 6.1e-47 191.0 147 63.3
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 7.9e-47 190.7 132 67.4
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 7.9e-47 190.7 155 60.0
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.4e-46 189.9 136 62.5
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.4e-46 189.9 138 65.9
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 1.4e-46 189.9 140 66.4
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 3.0e-46 188.7 130 63.8
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 3.0e-46 188.7 134 70.1
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 3.9e-46 188.3 136 64.0
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 6.7e-46 187.6 132 65.2
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 8.8e-46 187.2 132 65.9
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 8.8e-46 187.2 132 65.9
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 2.6e-45 185.7 142 66.2
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 3.3e-45 185.3 138 61.6
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 4.4e-45 184.9 132 65.2
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 4.4e-45 184.9 148 62.2
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 7.4e-45 184.1 148 62.2
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 1.7e-44 183.0 148 61.5
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 1.7e-44 183.0 139 63.3
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 2.2e-44 182.6 131 63.4
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 4.8e-44 181.4 130 63.8
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 4.8e-44 181.4 134 64.9
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.1e-43 180.3 136 61.8
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 1.1e-43 180.3 216 48.1
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 1.4e-43 179.9 138 58.0
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.8e-43 179.5 121 67.8
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.5e-42 176.4 130 63.8
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 2.6e-42 175.6 127 68.5
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 4.5e-42 174.9 133 65.4
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 1.7e-41 172.9 146 56.2
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 2.2e-41 172.6 133 62.4
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.2e-41 172.6 127 65.4
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.2e-41 172.6 127 65.4
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.4e-40 169.9 133 61.7
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.5e-40 169.1 120 65.0
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 4.2e-40 168.3 127 65.4
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 1.2e-39 166.8 125 67.2
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.0e-38 163.7 122 61.5
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 2.0e-37 159.5 132 56.1
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 7.4e-37 157.5 129 55.0
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.3e-36 156.8 129 55.0
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 2.2e-36 156.0 217 41.5
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 2.2e-36 156.0 111 64.9
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 2.8e-36 155.6 139 56.8
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 2.2e-33 146.0 126 58.7
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 4.0e-30 135.2 102 65.7
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 1.7e-28 129.8 89 75.3
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 2.2e-28 129.4 89 70.8
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 1.4e-27 126.7 131 50.4
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 1.8e-27 126.3 82 68.3
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 3.1e-27 125.6 81 70.4
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 1.0e-25 120.6 124 49.2
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 1.0e-25 120.6 130 47.7
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 1.3e-25 120.2 132 45.5
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 1.3e-25 120.2 124 49.2
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 1.3e-25 120.2 126 49.2
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.7e-25 119.8 124 49.2
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 5.0e-25 118.2 129 45.7
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 7.2e-24 114.4 128 43.0
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 6.1e-23 111.3 136 43.4
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.8e-22 109.8 79 68.4
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.0e-22 109.0 126 44.4
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 2.6e-21 105.9 128 39.8
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 1.3e-20 103.6 87 57.5
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 3.7e-20 102.1 95 50.5
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 8.3e-20 100.9 162 37.0
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 2.4e-19 99.4 95 50.5
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 6.5e-17 91.3 127 35.4
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 3.3e-16 89.0 127 34.6
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 8.0e-15 84.3 108 40.7
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 9.2e-11 70.9 52 59.6
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 3.5e-10 68.9 72 47.2
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 6.8e-06 54.7 48 52.1
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 6.8e-06 54.7 48 52.1


User provided reference genes

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