Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38376 Brassica carinata HOM05D006850 ORTHO05D008545 2.0e-140 502.3 235 100.0
C08p11310 Brassica napus HOM05D006850 ORTHO05D008545 2.0e-140 502.3 235 100.0
BolC8t48803H Brassica oleracea HOM05D006850 ORTHO05D008545 4.4e-127 458.0 235 93.2
Thhalv10026099m.g Eutrema salsugineum HOM05D006850 ORTHO05D008545 1.1e-120 436.8 238 86.1
Sp7g27010 Schrenkiella parvula HOM05D006850 ORTHO05D008545 5.2e-120 434.5 240 85.0
CARHR236810 Cardamine hirsuta HOM05D006850 ORTHO05D008545 6.4e-118 427.6 252 80.2
BcaNung01334 Brassica carinata HOM05D004115 ORTHO05D005004 3.5e-116 421.8 239 83.3
BolC1t01003H Brassica oleracea HOM05D006850 ORTHO05D008545 7.8e-116 420.6 239 82.0
BcaC09g51693 Brassica carinata HOM05D006850 ORTHO05D008545 1.9e-114 416.0 239 82.0
AL7G23370 Arabidopsis lyrata HOM05D006850 ORTHO05D008545 2.1e-113 412.5 252 77.4
AT4G29070 Arabidopsis thaliana HOM05D006850 ORTHO05D008545 9.9e-111 403.7 253 75.5
A08p19760 Brassica napus HOM05D004115 ORTHO05D008545 2.9e-110 402.1 222 87.8
BraA08t33936Z Brassica rapa HOM05D004115 ORTHO05D008545 3.7e-110 401.7 202 94.6
Carub.0007s1152 Capsella rubella HOM05D006850 ORTHO05D008545 9.2e-109 397.1 265 71.3
Aa31LG2G21380 Aethionema arabicum HOM05D006850 ORTHO05D008545 5.6e-106 387.9 241 74.7
BcaB03g12596 Brassica carinata HOM05D006850 ORTHO05D008545 1.7e-102 376.3 235 79.6
THA.LOC104826454 Tarenaya hassleriana HOM05D006850 ORTHO05D008545 3.5e-100 368.6 240 73.8
A01p08930 Brassica napus HOM05D004115 ORTHO05D005004 4.0e-96 355.1 205 82.0
BraA01t00839Z Brassica rapa HOM05D004115 ORTHO05D005004 4.0e-96 355.1 205 82.0
Cpa.g.sc157.64 Carica papaya HOM05D006850 ORTHO05D008545 2.3e-83 312.8 233 62.2
Cfa009858 Carpinus fangiana HOM05D006850 ORTHO05D008545 4.8e-81 305.1 230 61.7
Haze_23232 Corylus avellana HOM05D006850 ORTHO05D008545 4.8e-81 305.1 238 60.9
QL01p017096 Quercus lobata HOM05D006850 ORTHO05D008545 6.2e-81 304.7 230 62.2
Atru.chr3.2891 Acer truncatum HOM05D006850 ORTHO05D008545 1.7e-78 296.6 220 63.2
Potri.001G275300 Populus trichocarpa HOM05D006850 ORTHO05D008545 1.7e-78 296.6 227 61.7
TWI31G0452 Tripterygium wilfordii HOM05D006850 ORTHO05D008545 1.4e-77 293.5 220 59.5
CiPaw.14G112900 Carya illinoinensis HOM05D006850 ORTHO05D008545 4.2e-77 292.0 230 59.6
Gorai.001G133600 Gossypium raimondii HOM05D006850 ORTHO05D008545 7.1e-77 291.2 234 59.4
Sc06g0004690 Simmondsia chinensis HOM05D006850 ORTHO05D008545 2.1e-76 289.7 221 59.3
CANSAT54G0445 Cannabis sativa HOM05D006850 ORTHO05D008545 2.7e-76 289.3 229 58.5
Ciclev10016719m.g Citrus clementina HOM05D006850 ORTHO05D008545 3.5e-76 288.9 193 66.3
Gohir.D07G123600 Gossypium hirsutum HOM05D006850 ORTHO05D008545 3.5e-76 288.9 234 59.0
Ah.06g194580 Amaranthus hybridus HOM05D006850 ORTHO05D008545 7.9e-76 287.7 230 59.1
Prupe.4G265500 Prunus persica HOM05D006850 ORTHO05D008545 2.3e-75 286.2 223 58.7
Actinidia06966 Actinidia chinensis HOM05D006850 ORTHO05D008545 3.0e-75 285.8 230 58.3
Gohir.A07G119400 Gossypium hirsutum HOM05D006850 ORTHO05D008545 3.0e-75 285.8 234 59.0
Duzib150G1265 Durio zibethinus HOM05D006850 ORTHO05D008545 3.9e-75 285.4 238 57.6
PGR102G2982 Punica granatum HOM05D006850 ORTHO05D008545 1.1e-74 283.9 223 58.3
GSVIVG01037285001 Vitis vinifera HOM05D006850 ORTHO05D008545 1.5e-74 283.5 227 57.3
EL10Ac4g10117 Beta vulgaris HOM05D006850 ORTHO05D008545 1.9e-74 283.1 227 57.7
Oeu030634.1 Olea europaea HOM05D006850 ORTHO05D008545 2.5e-74 282.7 227 56.8
arahy.Tifrunner.gnm1.ann1.TFQN26 Arachis hypogaea HOM05D006850 ORTHO05D008545 4.3e-74 282.0 241 58.5
Eucgr.B03735 Eucalyptus grandis HOM05D006850 ORTHO05D008545 5.7e-74 281.6 235 57.4
Psat0s3115g0040 Pisum sativum HOM05D006850 ORTHO05D008545 5.7e-74 281.6 236 58.1
arahy.Tifrunner.gnm1.ann1.5G2EZD Arachis hypogaea HOM05D006850 ORTHO05D008545 9.6e-74 280.8 240 58.3
CSS0022862 Camellia sinensis var. sinensis HOM05D006850 ORTHO05D008545 9.6e-74 280.8 226 57.5
Cc01_g05370 Coffea canephora HOM05D006850 ORTHO05D008545 2.8e-73 279.3 220 57.3
Peaxi162Scf00032g02418 Petunia axillaris HOM05D006850 ORTHO05D008545 2.8e-73 279.3 217 58.1
Ca_03895_v3 Cicer arietinum L. HOM05D006850 ORTHO05D008545 4.8e-73 278.5 238 57.6
Duzib170G0642 Durio zibethinus HOM05D006850 ORTHO05D008545 4.8e-73 278.5 226 56.2
Manes.02G139100 Manihot esculenta HOM05D006850 ORTHO05D008545 4.8e-73 278.5 226 56.6
Medtr0180s0050 Medicago truncatula HOM05D006850 ORTHO05D008545 6.3e-73 278.1 194 66.0
AUR62006544 Chenopodium quinoa HOM05D006850 ORTHO05D008545 8.2e-73 277.7 182 69.8
Hma1.2p1_0262F.1_g105345 Hydrangea macrophylla HOM05D006850 ORTHO05D008545 1.8e-72 276.6 224 58.5
Hma1.2p1_3601F.1_g336990 Hydrangea macrophylla HOM05D006850 ORTHO05D008545 1.8e-72 276.6 224 58.5
ECA238G2187 Erigeron canadensis HOM05D006850 ORTHO05D008545 2.4e-72 276.2 191 66.5
Rhsim13G0209200 Rhododendron simsii HOM05D006850 ORTHO05D008545 4.1e-72 275.4 224 56.7
TPR.G16604 Trifolium pratense HOM05D006850 ORTHO05D008545 5.3e-72 275.0 194 66.0
vmacro04034 Vaccinium macrocarpon HOM05D006850 ORTHO05D008545 5.3e-72 275.0 220 56.4
Sabra16G0169600 Salix brachista HOM05D006850 ORTHO05D008545 9.0e-72 274.2 252 53.6
Migut.D00666 Erythranthe guttata HOM05D006850 ORTHO05D008545 1.2e-71 273.9 220 57.3
Sopen01g004290 Solanum pennellii HOM05D006850 ORTHO05D008545 1.2e-71 273.9 220 56.4
AUR62000194 Chenopodium quinoa HOM05D006850 ORTHO05D008545 1.5e-71 273.5 182 68.7
SalBow6G2930 Salvia bowleyana HOM05D006850 ORTHO05D008545 1.5e-71 273.5 229 55.9
DCAR_024408 Daucus carota HOM05D006850 ORTHO05D008545 2.6e-71 272.7 253 52.6
Lalb_Chr21g0314461 Lupinus albus HOM05D006850 ORTHO05D008545 3.4e-71 272.3 192 64.6
MD03G1165500 Malus domestica HOM05D006850 ORTHO05D008545 1.0e-70 270.8 225 55.6
Dinv36163 Davidia involucrata HOM05D006850 ORTHO05D008545 1.3e-70 270.4 232 56.9
Lsat_1_v5_gn_2_3500 Lactuca sativa HOM05D006850 ORTHO05D008545 1.3e-70 270.4 204 61.3
Manes.01G178500 Manihot esculenta HOM05D006850 ORTHO05D008545 1.3e-70 270.4 187 63.6
Solyc01g008780.3 Solanum lycopersicum HOM05D006850 ORTHO05D008545 1.7e-70 270.0 220 57.7
Hund07436 Selenicereus undatus HOM05D006850 ORTHO05D008545 2.9e-70 269.2 187 64.2
Glyma.20G041000 Glycine max HOM05D006850 ORTHO05D008545 3.8e-70 268.9 226 56.6
HanXRQChr14g0427601 Helianthus annuus HOM05D006850 ORTHO05D008545 5.0e-70 268.5 189 64.6
TAR633G0745 Trochodendron aralioides HOM05D006850 ORTHO05D008545 6.5e-70 268.1 215 56.7
PGSC0003DMG400022716 Solanum tuberosum HOM05D006850 ORTHO05D008545 1.1e-69 267.3 220 55.0
ClCG02G022830 Citrullus lanatus HOM05D006850 ORTHO05D008545 2.5e-69 266.2 229 55.5
Glyma.07G232000 Glycine max HOM05D006850 ORTHO05D008545 4.2e-69 265.4 227 56.4
Hund21980 Selenicereus undatus HOM05D006850 ORTHO05D008545 5.5e-69 265.0 196 61.7
VMungo0540G1950 Vigna mungo HOM05D006850 ORTHO05D008545 7.2e-69 264.6 229 57.2
MSTRG.18462 Avicennia marina HOM05D006850 ORTHO05D008545 1.2e-68 263.8 219 56.6
CsaV3_6G038970 Cucumis sativus L. HOM05D006850 ORTHO05D008545 2.1e-68 263.1 229 55.0
Lj6g0025243 Lotus japonicus HOM05D006850 ORTHO05D008545 2.1e-68 263.1 186 64.0
unitig_0.g300 Utricularia gibba HOM05D006850 ORTHO05D008545 2.7e-68 262.7 223 56.5
Phvul.006G014500 Phaseolus vulgaris HOM05D006850 ORTHO05D008545 4.6e-68 261.9 224 55.8
Sed0015967 Sechium edule HOM05D006850 ORTHO05D008545 7.9e-68 261.2 238 52.9
SGA_v2.0_scaffold29G12238 Striga asiatica HOM05D006850 ORTHO05D008545 3.9e-67 258.8 181 65.7
MELO3C014560.2 Cucumis melo HOM05D006850 ORTHO05D008545 1.1e-66 257.3 229 53.7
RcHm_v2.0_Chr5g0050481 Rosa chinensis HOM05D006850 ORTHO05D008545 2.5e-66 256.1 180 65.6
CAN.G64.14 Capsicum annuum HOM05D006850 ORTHO05D008545 1.3e-65 253.8 248 49.6
Thecc.09G248000 Theobroma cacao HOM05D006850 ORTHO05D008545 2.4e-64 249.6 200 57.5
PSO339G1255 Papaver somniferum HOM05D006850 ORTHO05D008545 3.1e-64 249.2 218 55.5
Aqoxy1G00367 Aquilegia oxysepala HOM05D006850 ORTHO05D008545 9.0e-64 247.7 225 55.6
PSO384G2311 Papaver somniferum HOM05D006850 ORTHO05D008545 2.6e-63 246.1 193 60.1
Nitab4.5_0000718g0310 Nicotiana tabacum HOM05D006850 ORTHO05D008545 3.4e-63 245.7 214 56.5
COL.COLO4_32765 Corchorus olitorius HOM05D006850 ORTHO05D008545 1.7e-62 243.4 163 65.6
Nitab4.5_0003488g0060 Nicotiana tabacum HOM05D006850 ORTHO05D008545 1.4e-61 240.4 212 55.2
FAN16G3159 Fragaria x ananassa HOM05D006850 ORTHO05D008545 2.5e-61 239.6 161 67.7
Sed0010964 Sechium edule HOM05D006850 ORTHO05D008545 2.5e-61 239.6 203 54.7
FAN21G1525 Fragaria x ananassa HOM05D006850 ORTHO05D008545 3.2e-61 239.2 161 67.7
FAN25G3781 Fragaria x ananassa HOM05D006850 ORTHO05D008545 3.2e-61 239.2 161 67.7
FvH4_3g27811 Fragaria vesca HOM05D006850 ORTHO05D008545 5.5e-61 238.4 161 67.7
MBI07_g26873_MAGBIO Magnolia biondii HOM05D006850 ORTHO05D008545 9.4e-61 237.7 227 49.8
Phvul.009G232900 Phaseolus vulgaris HOM05D006850 ORTHO05D008545 2.7e-60 236.1 211 54.0
MBI07_g21930_MAGBIO Magnolia biondii HOM05D006850 ORTHO05D008545 1.0e-59 234.2 185 57.3
Nn7g36731 Nelumbo nucifera HOM05D006850 ORTHO05D008545 1.0e-59 234.2 196 54.6
CDE09G0720 Ceratophyllum demersum HOM05D006850 ORTHO05D008545 1.4e-56 223.8 169 61.5
ATR0745G042 Amborella trichopoda HOM05D006850 ORTHO05D008545 9.1e-56 221.1 175 59.4
HPP92_025151 Vanilla planifolia HOM05D006850 ORTHO05D008545 3.2e-53 212.6 128 70.3
CDE08G0294 Ceratophyllum demersum HOM05D006850 ORTHO05D008545 1.0e-51 207.6 142 63.4
SEGI_38632 Sequoiadendron giganteum HOM05D006850 ORTHO05D008545 1.0e-51 207.6 195 50.3
Lj1P279T21 Lonicera japonica HOM05D006850 ORTHO05D008545 1.8e-51 206.8 160 60.0
SHI34292 Sapria himalayana HOM05D006850 ORTHO05D008545 1.1e-45 187.6 150 58.0
Mapoly0002s0074 Marchantia polymorpha HOM05D006850 ORTHO05D008545 1.1e-37 161.0 122 55.7
Pp3c9_17190 Physcomitrium patens HOM05D006850 ORTHO05D008545 7.5e-34 148.3 124 51.6
Pp3c15_13470 Physcomitrium patens HOM05D006850 ORTHO05D008545 9.8e-34 147.9 121 53.7
SMO145G0227 Selaginella moellendorffii HOM05D006850 ORTHO05D008545 7.0e-32 141.7 82 65.9
CBR_g29725 Chara braunii HOM05D006850 ORTHO05D008545 4.7e-28 129.0 106 52.8
HPP92_025149 Vanilla planifolia HOM05D006850 ORTHO05D008545 2.3e-27 126.7 84 61.9
Actinidia13010 Actinidia chinensis HOM05D006850 ORTHO05D008545 6.2e-12 75.5 160 34.4


User provided reference genes

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