Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p11060 Brassica napus HOM05D003036 ORTHO05D027288 3.0e-72 275.0 134 100.0
BolC8t48775H Brassica oleracea HOM05D003036 ORTHO05D027288 2.6e-63 245.4 141 90.8
BcaC07g38358 Brassica carinata HOM05D003036 ORTHO05D027288 2.4e-53 212.2 134 84.3
BraA08t33950Z Brassica rapa HOM05D003036 ORTHO05D027288 4.0e-40 168.3 105 81.9
Sp7g26750 Schrenkiella parvula HOM05D003036 ORTHO05D009331 1.9e-21 106.3 136 48.5
Thhalv10025669m.g Eutrema salsugineum HOM05D003036 ORTHO05D009331 5.4e-21 104.8 136 47.8
A03p58390 Brassica napus HOM05D003036 ORTHO05D009331 2.1e-20 102.8 135 48.1
BraA03t14901Z Brassica rapa HOM05D003036 ORTHO05D009331 2.7e-20 102.4 135 49.6
Aa31LG2G21630 Aethionema arabicum HOM05D003036 ORTHO05D009331 3.5e-20 102.1 136 46.3
AT4G28740 Arabidopsis thaliana HOM05D003036 ORTHO05D009331 3.5e-20 102.1 136 46.3
AL7G23760 Arabidopsis lyrata HOM05D003036 ORTHO05D009331 4.6e-20 101.7 136 46.3
BcaC06g32606 Brassica carinata HOM05D003036 ORTHO05D009331 6.0e-20 101.3 123 50.4
C07p56410 Brassica napus HOM05D003036 ORTHO05D009331 7.8e-20 100.9 132 49.2
BolC7t46120H Brassica oleracea HOM05D003036 ORTHO05D009331 7.8e-20 100.9 132 49.2
Carub.0007s1190 Capsella rubella HOM05D003036 ORTHO05D009331 1.1e-18 97.1 136 44.9
CARHR236530 Cardamine hirsuta HOM05D003036 ORTHO05D009331 1.1e-18 97.1 135 45.2
THA.LOC104804029 Tarenaya hassleriana HOM05D003036 ORTHO05D009331 4.7e-17 91.7 142 40.8
vmacro14778 Vaccinium macrocarpon HOM05D003036 ORTHO05D009331 1.8e-16 89.7 155 38.7
Aqoxy5G00083 Aquilegia oxysepala HOM05D006620 ORTHO05D008921 3.1e-16 89.0 173 36.4
ECA247G1318 Erigeron canadensis HOM05D003036 ORTHO05D009331 3.1e-16 89.0 135 40.7
Atru.chr5.1919 Acer truncatum HOM05D003036 ORTHO05D009331 4.0e-16 88.6 131 41.2
arahy.Tifrunner.gnm1.ann1.PYW4YI Arachis hypogaea HOM05D003036 ORTHO05D009331 6.8e-16 87.8 132 40.9
arahy.Tifrunner.gnm1.ann1.S4J522 Arachis hypogaea HOM05D003036 ORTHO05D009331 1.2e-15 87.0 132 40.9
Lj2A1137T46 Lonicera japonica HOM05D003036 ORTHO05D009331 1.2e-15 87.0 135 39.3
MD05G1184000 Malus domestica HOM05D003036 ORTHO05D009331 1.2e-15 87.0 117 41.9
Rhsim01G0258700 Rhododendron simsii HOM05D002582 ORTHO05D002781 1.2e-15 87.0 135 38.5
TWI59G0362 Tripterygium wilfordii HOM05D003036 ORTHO05D009331 1.2e-15 87.0 127 42.5
CANSAT01G1542 Cannabis sativa HOM05D003036 ORTHO05D009331 1.5e-15 86.7 134 39.6
Nn3g19850 Nelumbo nucifera HOM05D003036 ORTHO05D009331 1.5e-15 86.7 135 38.5
Ciclev10021056m.g Citrus clementina HOM05D003036 ORTHO05D009331 2.0e-15 86.3 136 41.2
Manes.13G042300 Manihot esculenta HOM05D003036 ORTHO05D009331 2.6e-15 85.9 134 42.5
GSVIVG01028479001 Vitis vinifera HOM05D003036 ORTHO05D009331 2.6e-15 85.9 136 40.4
Ah.08g213840 Amaranthus hybridus HOM05D003036 ORTHO05D009331 3.4e-15 85.5 178 35.4
HanXRQChr15g0468111 Helianthus annuus HOM05D003036 ORTHO05D009331 3.4e-15 85.5 135 39.3
Sc05g0002520 Simmondsia chinensis HOM05D003036 ORTHO05D009331 3.4e-15 85.5 135 40.0
SGA_v2.0_scaffold1G00683 Striga asiatica HOM05D003036 ORTHO05D009331 3.4e-15 85.5 132 40.2
Thecc.01G245500 Theobroma cacao HOM05D003036 ORTHO05D009331 3.4e-15 85.5 134 39.6
DCAR_000543 Daucus carota HOM05D003036 ORTHO05D009331 4.4e-15 85.1 136 39.0
Lj5g0022856 Lotus japonicus HOM05D003036 ORTHO05D009331 5.8e-15 84.7 135 40.0
PSO761G0602 Papaver somniferum HOM05D003036 ORTHO05D009331 5.8e-15 84.7 132 39.4
Ca_09629_v3 Cicer arietinum L. HOM05D003036 ORTHO05D009331 9.9e-15 84.0 132 39.4
PSO210G3998 Papaver somniferum HOM05D003036 ORTHO05D009331 9.9e-15 84.0 132 38.6
RcHm_v2.0_Chr6g0285631 Rosa chinensis HOM05D003036 ORTHO05D009331 9.9e-15 84.0 134 38.8
TAR362G0272 Trochodendron aralioides HOM05D003036 ORTHO05D009331 9.9e-15 84.0 135 37.8
CSS0019938 Camellia sinensis var. sinensis HOM05D003036 ORTHO05D009331 1.7e-14 83.2 135 37.8
AUR62008850 Chenopodium quinoa HOM05D003036 ORTHO05D009331 1.7e-14 83.2 178 33.1
AUR62025396 Chenopodium quinoa HOM05D003036 ORTHO05D009331 1.7e-14 83.2 178 33.1
Eucgr.H00829 Eucalyptus grandis HOM05D003036 ORTHO05D009331 1.7e-14 83.2 133 39.8
Nitab4.5_0004333g0030 Nicotiana tabacum HOM05D003036 ORTHO05D009331 1.7e-14 83.2 136 39.0
Sabra14G0143000 Salix brachista HOM05D003036 ORTHO05D009331 1.7e-14 83.2 134 39.6
Migut.D00497 Erythranthe guttata HOM05D003036 ORTHO05D009331 2.2e-14 82.8 136 37.5
Lsat_1_v5_gn_9_11980 Lactuca sativa HOM05D003036 ORTHO05D009331 2.2e-14 82.8 135 38.5
SalBow4G2998 Salvia bowleyana HOM05D003036 ORTHO05D009331 2.2e-14 82.8 178 36.5
Cpa.g.sc87.75 Carica papaya HOM05D003036 ORTHO05D009331 2.9e-14 82.4 134 38.8
Cc01_g17510 Coffea canephora HOM05D003036 ORTHO05D009331 2.9e-14 82.4 135 37.8
COL.COLO4_36322 Corchorus olitorius HOM05D003036 ORTHO05D009331 2.9e-14 82.4 134 38.8
FAN15G0853 Fragaria x ananassa HOM05D003036 ORTHO05D009331 2.9e-14 82.4 135 40.0
Nitab4.5_0000385g0210 Nicotiana tabacum HOM05D003036 ORTHO05D009331 2.9e-14 82.4 135 38.5
MD10G1171900 Malus domestica HOM05D003036 ORTHO05D009331 3.7e-14 82.0 135 38.5
CAN.G15.15 Capsicum annuum HOM05D003036 ORTHO05D009331 4.9e-14 81.6 143 38.5
Haze_24735 Corylus avellana HOM05D003036 ORTHO05D009331 6.4e-14 81.3 133 37.6
DCAR_004698 Daucus carota HOM05D003036 ORTHO05D009331 6.4e-14 81.3 136 38.2
Potri.014G194500 Populus trichocarpa HOM05D003036 ORTHO05D009331 6.4e-14 81.3 134 39.6
Hund18340 Selenicereus undatus HOM05D003036 ORTHO05D009331 6.4e-14 81.3 135 35.6
EL10Ac7g17750 Beta vulgaris HOM05D003036 ORTHO05D009331 8.4e-14 80.9 136 37.5
CiPaw.04G192000 Carya illinoinensis HOM05D003036 ORTHO05D009331 8.4e-14 80.9 134 37.3
FvH4_2g19970 Fragaria vesca HOM05D003036 ORTHO05D009331 8.4e-14 80.9 143 37.8
FAN24G2514 Fragaria x ananassa HOM05D003036 ORTHO05D009331 8.4e-14 80.9 143 37.8
MSTRG.21448 Avicennia marina HOM05D003036 ORTHO05D009331 1.1e-13 80.5 135 39.3
Lalb_Chr02g0152911 Lupinus albus HOM05D003036 ORTHO05D009331 1.4e-13 80.1 178 34.3
QL09p043411 Quercus lobata HOM05D003036 ORTHO05D009331 1.4e-13 80.1 134 38.1
HPP92_022681 Vanilla planifolia HOM05D003036 ORTHO05D009331 1.4e-13 80.1 138 36.2
MBI07_g08921_MAGBIO Magnolia biondii HOM05D003036 ORTHO05D009331 1.9e-13 79.7 137 37.2
Glyma.13G129300 Glycine max HOM05D003036 ORTHO05D009331 2.4e-13 79.3 132 38.6
Medtr1g069240 Medicago truncatula HOM05D003036 ORTHO05D009331 2.4e-13 79.3 46 82.6
Zm00001eb077910 Zea mays HOM05D003036 ORTHO05D009331 2.4e-13 79.3 140 35.0
Gohir.A07G202700 Gossypium hirsutum HOM05D003036 ORTHO05D009331 4.1e-13 78.6 133 38.3
TPR.G28994 Trifolium pratense HOM05D003036 ORTHO05D009331 5.4e-13 78.2 135 36.3
VMungo0720G0945 Vigna mungo HOM05D003036 ORTHO05D009331 5.4e-13 78.2 131 37.4
Gohir.D07G208900 Gossypium hirsutum HOM05D003036 ORTHO05D009331 7.1e-13 77.8 134 37.3
Gorai.001G235900 Gossypium raimondii HOM05D003036 ORTHO05D009331 7.1e-13 77.8 134 37.3
Actinidia23750 Actinidia chinensis HOM05D003036 ORTHO05D009331 9.2e-13 77.4 53 67.9
ATR0787G112 Amborella trichopoda HOM05D003036 ORTHO05D009331 1.2e-12 77.0 133 37.6
Phvul.008G133800 Phaseolus vulgaris HOM05D003036 ORTHO05D009331 1.2e-12 77.0 131 37.4
Psat6g065200 Pisum sativum HOM05D003036 ORTHO05D009331 1.2e-12 77.0 46 80.4
MELO3C012814.2 Cucumis melo HOM05D003036 ORTHO05D009331 2.1e-12 76.3 134 36.6
PGSC0003DMG400022024 Solanum tuberosum HOM05D003036 ORTHO05D009331 2.7e-12 75.9 135 38.5
Prupe.8G210100 Prunus persica HOM05D003036 ORTHO05D009331 3.5e-12 75.5 135 36.3
unitig_8.g3077 Utricularia gibba HOM05D003036 ORTHO05D009331 3.5e-12 75.5 176 31.2
Mapoly0009s0217 Marchantia polymorpha HOM05D003036 ORTHO05D009331 6.0e-12 74.7 146 34.9
Sed0021737 Sechium edule HOM05D003036 ORTHO05D009331 6.0e-12 74.7 133 36.1
Sopen09g025310 Solanum pennellii HOM05D003036 ORTHO05D009331 6.0e-12 74.7 135 37.0
CsaV3_3G028580 Cucumis sativus L. HOM05D003036 ORTHO05D009331 1.3e-11 73.6 45 73.3
CDE07G1881 Ceratophyllum demersum HOM05D003036 ORTHO05D009331 1.7e-11 73.2 45 71.1
Pp3c12_5470 Physcomitrium patens HOM05D003036 ORTHO05D009331 5.1e-11 71.6 144 33.3
FAN27G1753 Fragaria x ananassa HOM05D003036 ORTHO05D009331 6.6e-11 71.2 46 71.7
SMO339G0016 Selaginella moellendorffii HOM05D003036 ORTHO05D009331 9.6e-10 67.4 46 67.4
ClCG07G001580 Citrullus lanatus HOM05D003036 ORTHO05D009331 8.1e-09 64.3 127 33.9
CDE07G0700 Ceratophyllum demersum HOM05D003036 ORTHO05D009331 5.2e-08 61.6 126 35.7
A08p19930 Brassica napus HOM05D003036 ORTHO05D009331 1.7e-06 56.6 27 88.9


User provided reference genes

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