Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 2.8e-101 372.1 209 100.0
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 2.8e-101 372.1 209 100.0
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 5.2e-95 351.3 209 94.7
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 7.2e-89 330.9 209 85.6
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 2.3e-87 325.9 209 87.1
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 1.1e-84 317.0 207 89.4
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 5.9e-83 311.2 207 80.7
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 2.0e-75 286.2 207 74.4
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 1.9e-73 279.6 211 73.9
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 7.3e-73 277.7 210 73.3
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 2.0e-67 259.6 207 73.4
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.3e-66 256.9 205 69.3
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 1.5e-65 253.4 210 71.4
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 2.3e-63 246.1 204 64.7
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 2.0e-62 243.0 207 71.5
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 5.8e-62 241.5 208 65.9
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 5.8e-62 241.5 207 70.5
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 5.4e-60 235.0 207 69.1
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 7.0e-60 234.6 207 68.1
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 9.2e-60 234.2 207 69.1
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 1.5e-57 226.9 209 66.5
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 1.5e-57 226.9 209 66.5
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 1.8e-55 219.9 205 66.3
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 1.8e-55 219.9 205 66.3
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 2.2e-53 213.0 204 64.7
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 2.2e-53 213.0 188 67.0
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 5.2e-47 191.8 204 60.8
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 2.3e-42 176.4 205 50.2
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 7.6e-38 161.4 224 47.3
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 7.6e-38 161.4 224 47.3
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 1.9e-36 156.8 178 47.2
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 1.9e-36 156.8 209 47.4
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 2.4e-36 156.4 199 47.7
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 4.2e-36 155.6 228 46.1
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 4.2e-36 155.6 216 47.7
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.2e-35 154.1 209 45.9
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 3.5e-35 152.5 229 42.4
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.3e-34 150.6 211 46.4
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 3.0e-34 149.4 197 43.7
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 1.1e-33 147.5 229 45.0
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 2.5e-33 146.4 217 47.9
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 2.5e-33 146.4 213 44.6
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 2.5e-33 146.4 233 44.2
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 7.3e-33 144.8 224 42.4
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 7.3e-33 144.8 213 43.7
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 9.6e-33 144.4 222 40.5
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.1e-32 143.3 206 45.1
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 2.1e-32 143.3 243 40.3
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 4.8e-32 142.1 175 52.0
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 6.2e-32 141.7 210 48.6
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 6.2e-32 141.7 211 43.1
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 8.1e-32 141.4 211 43.6
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 3.1e-31 139.4 254 39.0
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.0e-31 139.0 222 42.8
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 5.3e-31 138.7 224 41.1
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 6.9e-31 138.3 234 40.2
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 9.0e-31 137.9 222 40.5
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.2e-30 137.5 213 42.3
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 2.6e-30 136.3 174 43.1
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 2.6e-30 136.3 221 41.6
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 5.8e-30 135.2 222 41.9
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 5.8e-30 135.2 210 41.9
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 2.2e-29 133.3 216 43.5
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 2.2e-29 133.3 229 42.4
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 3.8e-29 132.5 226 43.4
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 4.9e-29 132.1 181 43.6
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 6.4e-29 131.7 216 41.2
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 6.4e-29 131.7 218 43.6
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.2e-28 129.4 219 41.6
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 9.3e-28 127.9 201 43.3
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 1.6e-27 127.1 189 42.9
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 1.6e-27 127.1 218 40.4
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 1.6e-27 127.1 231 39.4
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 2.1e-27 126.7 207 46.9
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 2.7e-27 126.3 203 45.8
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 3.5e-27 125.9 84 66.7
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 3.5e-27 125.9 192 49.5
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 4.6e-27 125.6 198 48.5
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 4.6e-27 125.6 75 73.3
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 4.6e-27 125.6 206 39.3
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 6.0e-27 125.2 198 44.4
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 1.0e-26 124.4 160 43.8
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 1.3e-26 124.0 224 40.2
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 1.8e-26 123.6 223 38.6
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 2.3e-26 123.2 221 41.2
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 3.0e-26 122.9 84 64.3
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 3.0e-26 122.9 221 40.7
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 3.0e-26 122.9 184 39.7
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 3.9e-26 122.5 173 49.7
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 5.1e-26 122.1 83 66.3
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 6.7e-26 121.7 206 39.3
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.7e-26 121.7 215 44.2
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 6.7e-26 121.7 194 46.4
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 8.7e-26 121.3 83 66.3
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 8.7e-26 121.3 233 41.2
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 1.1e-25 120.9 76 71.1
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 1.1e-25 120.9 189 41.8
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 1.9e-25 120.2 171 42.1
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 2.5e-25 119.8 231 39.4
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 3.3e-25 119.4 206 46.1
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 4.3e-25 119.0 223 39.0
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 4.3e-25 119.0 216 40.7
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 4.3e-25 119.0 214 43.5
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 5.6e-25 118.6 204 43.1
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 5.6e-25 118.6 187 38.5
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 7.4e-25 118.2 197 42.1
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 9.6e-25 117.9 84 66.7
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.8e-24 116.3 205 47.3
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 2.8e-24 116.3 82 65.9
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 6.2e-24 115.2 197 39.6
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 6.2e-24 115.2 196 42.9
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.1e-23 114.4 218 37.2
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 1.4e-23 114.0 254 35.0
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 1.8e-23 113.6 222 42.8
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 2.4e-23 113.2 76 71.1
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 3.1e-23 112.8 135 46.7
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.1e-23 112.8 183 39.3
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 4.0e-23 112.5 220 44.1
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 6.9e-23 111.7 206 39.8
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 6.9e-23 111.7 199 39.7
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 9.0e-23 111.3 220 43.6
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 2.0e-22 110.2 200 38.0
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 4.5e-22 109.0 75 64.0
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 1.0e-21 107.8 207 43.0
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 2.9e-21 106.3 97 55.7
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 3.8e-21 105.9 74 68.9
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 6.5e-21 105.1 97 55.7
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 6.5e-21 105.1 84 59.5
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 8.4e-21 104.8 207 34.3
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 8.4e-21 104.8 73 63.0
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 9.3e-20 101.3 71 64.8
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 1.6e-19 100.5 84 56.0
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.0e-18 97.8 123 53.7
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.0e-18 97.8 183 45.4
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 1.8e-18 97.1 228 35.5
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 1.9e-17 93.6 219 31.5
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 5.7e-17 92.0 75 52.0
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 2.8e-16 89.7 223 33.6
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.8e-15 87.0 98 57.1
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 6.9e-15 85.1 98 57.1
BolC3t18785H Brassica oleracea HOM05D004801 ORTHO05D004735 2.0e-14 83.6 98 56.1
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.4e-14 82.8 186 37.6
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 4.5e-14 82.4 79 51.9
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 5.8e-14 82.0 74 52.7
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 5.0e-13 79.0 81 46.9
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 1.9e-12 77.0 166 34.3
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 9.3e-12 74.7 102 49.0
BcaC03g17563 Brassica carinata HOM05D000889 ORTHO05D027509 1.2e-11 74.3 84 58.3
BolC2t11588H Brassica oleracea HOM05D004801 ORTHO05D005747 2.7e-11 73.2 87 65.5
A01p19730 Brassica napus HOM05D004801 ORTHO05D005747 4.6e-11 72.4 93 62.4
BcaC02g09253 Brassica carinata HOM05D035837 ORTHO05D032574 8.2e-08 61.6 81 54.3
SalBow1G0370 Salvia bowleyana HOM05D004801 ORTHO05D005747 8.2e-08 61.6 152 31.6


User provided reference genes

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