Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p10430 Brassica napus HOM05D000442 ORTHO05D019979 2.3e-137 492.3 252 100.0
A01p10300 Brassica napus HOM05D000442 ORTHO05D006868 1.8e-57 226.9 190 67.9
BraA01t00977Z Brassica rapa HOM05D000442 ORTHO05D006868 5.2e-57 225.3 189 67.7
BcaC09g51526 Brassica carinata HOM05D000442 ORTHO05D006868 7.4e-56 221.5 191 67.0
C01p12250 Brassica napus HOM05D000442 ORTHO05D006868 7.4e-56 221.5 191 67.0
BolC1t01201H Brassica oleracea HOM05D000442 ORTHO05D006868 7.4e-56 221.5 191 67.0
BcaNung00008 Brassica carinata HOM05D000442 ORTHO05D006868 2.5e-51 206.5 190 63.7
C06p40950 Brassica napus HOM05D000442 ORTHO05D019979 3.6e-50 202.6 292 51.0
BolC6t39334H Brassica oleracea HOM05D000442 ORTHO05D019979 2.3e-49 199.9 287 50.2
Sp7g15670 Schrenkiella parvula HOM05D000442 ORTHO05D006868 4.1e-46 189.1 197 57.9
BcaC07g38299 Brassica carinata HOM05D000442 ORTHO05D019979 5.2e-41 172.2 89 96.6
BcaC08g46343 Brassica carinata HOM05D008492 ORTHO05D019979 3.3e-35 152.9 279 41.2
AL8G12270 Arabidopsis lyrata HOM05D000442 ORTHO05D006868 4.0e-33 146.0 215 46.5
BraA03t13328Z Brassica rapa HOM05D008492 ORTHO05D019979 8.9e-33 144.8 90 85.6
Thhalv10000793m.g Eutrema salsugineum HOM05D000442 ORTHO05D006868 2.4e-30 136.7 212 45.3
Sp2g11050 Schrenkiella parvula HOM05D000442 ORTHO05D006868 4.1e-30 136.0 210 45.2
AT5G46190 Arabidopsis thaliana HOM05D000442 ORTHO05D006868 7.0e-30 135.2 215 43.3
Carub.0008s0173 Capsella rubella HOM05D000442 ORTHO05D006868 7.0e-30 135.2 215 42.3
AT4G18375 Arabidopsis thaliana HOM05D000442 ORTHO05D006868 1.7e-28 130.6 176 50.0
BcaC06g31493 Brassica carinata HOM05D000442 ORTHO05D006868 6.6e-28 128.6 220 43.2
Aa31LG9G6720 Aethionema arabicum HOM05D000442 ORTHO05D006868 8.6e-28 128.3 205 45.9
CARHR175600 Cardamine hirsuta HOM05D000442 ORTHO05D006868 1.1e-27 127.9 214 43.0
A06p46100 Brassica napus HOM05D000442 ORTHO05D006868 1.9e-27 127.1 218 43.6
AL7G35990 Arabidopsis lyrata HOM05D000442 ORTHO05D006868 2.5e-27 126.7 176 50.0
BraA06t27475Z Brassica rapa HOM05D000442 ORTHO05D006868 5.6e-27 125.6 218 43.1
BcaC01g06889 Brassica carinata HOM05D000209 ORTHO05D000129 7.3e-27 125.2 120 60.0
Cpa.g.sc17.4 Carica papaya HOM05D000442 ORTHO05D006868 9.5e-27 124.8 201 44.3
BolC7t43480H Brassica oleracea HOM05D000442 ORTHO05D006868 1.2e-26 124.4 217 43.3
TWI09G1294 Tripterygium wilfordii HOM05D000442 ORTHO05D006868 2.1e-26 123.6 178 46.1
C07p29400 Brassica napus HOM05D000442 ORTHO05D006868 2.8e-26 123.2 218 42.7
Haze_05626 Corylus avellana HOM05D000442 ORTHO05D006868 2.8e-26 123.2 199 43.2
Cfa000924 Carpinus fangiana HOM05D000442 ORTHO05D006868 4.7e-26 122.5 201 41.8
CiPaw.09G121800 Carya illinoinensis HOM05D000442 ORTHO05D006868 4.7e-26 122.5 201 42.8
Atru.chr10.1168 Acer truncatum HOM05D000442 ORTHO05D006868 6.1e-26 122.1 195 43.6
TWI73G0723 Tripterygium wilfordii HOM05D000442 ORTHO05D006868 6.1e-26 122.1 178 45.5
Gohir.D09G077100 Gossypium hirsutum HOM05D000442 ORTHO05D006868 8.0e-26 121.7 201 42.8
Carub.0007s2290 Capsella rubella HOM05D000442 ORTHO05D006868 1.0e-25 121.3 96 71.9
Gohir.A09G077100 Gossypium hirsutum HOM05D000442 ORTHO05D006868 1.0e-25 121.3 201 42.3
Thecc.06G147900 Theobroma cacao HOM05D000442 ORTHO05D006868 1.4e-25 120.9 201 43.3
CSS0033595 Camellia sinensis var. sinensis HOM05D000442 ORTHO05D006868 1.8e-25 120.6 201 42.3
Manes.15G123500 Manihot esculenta HOM05D000442 ORTHO05D006868 1.8e-25 120.6 202 42.1
CARHR225160 Cardamine hirsuta HOM05D000442 ORTHO05D006868 3.1e-25 119.8 86 75.6
RcHm_v2.0_Chr5g0014461 Rosa chinensis HOM05D000442 ORTHO05D006868 4.0e-25 119.4 201 43.8
THA.LOC104806133 Tarenaya hassleriana HOM05D000442 ORTHO05D006868 5.2e-25 119.0 198 41.9
Gorai.006G092200 Gossypium raimondii HOM05D000442 ORTHO05D006868 8.9e-25 118.2 207 42.0
Ciclev10014608m.g Citrus clementina HOM05D000442 ORTHO05D006868 1.2e-24 117.9 201 41.3
FAN11G3325 Fragaria x ananassa HOM05D000442 ORTHO05D006868 1.5e-24 117.5 201 42.8
Duzib160G0470 Durio zibethinus HOM05D000442 ORTHO05D006868 2.0e-24 117.1 206 41.3
QL05p055843 Quercus lobata HOM05D000442 ORTHO05D006868 2.0e-24 117.1 201 41.3
MD10G1260300 Malus domestica HOM05D000442 ORTHO05D006868 3.4e-24 116.3 200 41.0
Prupe.4G083200 Prunus persica HOM05D000442 ORTHO05D006868 3.4e-24 116.3 201 41.8
FvH4_3g05250 Fragaria vesca HOM05D000442 ORTHO05D006868 4.4e-24 115.9 201 42.3
PGR083G2694 Punica granatum HOM05D000442 ORTHO05D006868 4.4e-24 115.9 202 40.6
Dinv32233 Davidia involucrata HOM05D000442 ORTHO05D006868 7.5e-24 115.2 201 40.8
Potri.011G082500 Populus trichocarpa HOM05D000442 ORTHO05D006868 7.5e-24 115.2 195 42.1
Sabra11G0065800 Salix brachista HOM05D000442 ORTHO05D006868 7.5e-24 115.2 179 44.1
VMungo0251G0691 Vigna mungo HOM05D000442 ORTHO05D006868 7.5e-24 115.2 204 40.2
FAN25G1399 Fragaria x ananassa HOM05D000442 ORTHO05D006868 9.8e-24 114.8 201 42.3
MD05G1281400 Malus domestica HOM05D000442 ORTHO05D006868 1.3e-23 114.4 201 40.8
Dinv05220 Davidia involucrata HOM05D000442 ORTHO05D006868 1.7e-23 114.0 201 41.3
Nitab4.5_0006038g0010 Nicotiana tabacum HOM05D000442 ORTHO05D006868 1.7e-23 114.0 201 40.8
Phvul.002G180500 Phaseolus vulgaris HOM05D000442 ORTHO05D006868 1.7e-23 114.0 204 39.7
Lj2C320G7 Lonicera japonica HOM05D000442 ORTHO05D006868 2.2e-23 113.6 199 40.7
Nn3g20408 Nelumbo nucifera HOM05D000442 ORTHO05D006868 2.2e-23 113.6 198 39.9
GSVIVG01021523001 Vitis vinifera HOM05D000442 ORTHO05D006868 2.2e-23 113.6 201 40.3
arahy.Tifrunner.gnm1.ann1.IEW56P Arachis hypogaea HOM05D000442 ORTHO05D006868 3.7e-23 112.8 202 39.1
FAN16G2020 Fragaria x ananassa HOM05D000442 ORTHO05D006868 3.7e-23 112.8 201 41.8
Glyma.08G097700 Glycine max HOM05D000442 ORTHO05D006868 3.7e-23 112.8 202 39.1
FAN21G1137 Fragaria x ananassa HOM05D000442 ORTHO05D006868 6.4e-23 112.1 201 41.8
Nitab4.5_0005094g0030 Nicotiana tabacum HOM05D000442 ORTHO05D006868 6.4e-23 112.1 201 40.8
DCAR_007882 Daucus carota HOM05D000442 ORTHO05D006868 8.3e-23 111.7 198 37.4
Rhsim13G0115500 Rhododendron simsii HOM05D000442 ORTHO05D006868 8.3e-23 111.7 200 41.0
Aqoxy1G01680 Aquilegia oxysepala HOM05D000442 ORTHO05D006868 1.1e-22 111.3 200 41.0
Eucgr.E02424 Eucalyptus grandis HOM05D000442 ORTHO05D006868 1.1e-22 111.3 204 40.7
arahy.Tifrunner.gnm1.ann1.91ARJF Arachis hypogaea HOM05D000442 ORTHO05D006868 1.9e-22 110.5 202 38.6
HPP92_005871 Vanilla planifolia HOM05D000442 ORTHO05D006868 1.9e-22 110.5 195 40.0
MBI02_g03073_MAGBIO Magnolia biondii HOM05D000442 ORTHO05D006868 2.4e-22 110.2 200 41.5
Nn4g26604 Nelumbo nucifera HOM05D000442 ORTHO05D006868 2.4e-22 110.2 204 41.2
TAR626G1820 Trochodendron aralioides HOM05D000442 ORTHO05D006868 2.4e-22 110.2 179 43.6
Medtr2g019090 Medicago truncatula HOM05D000442 ORTHO05D006868 3.2e-22 109.8 196 38.3
Lalb_Chr20g0117831 Lupinus albus HOM05D000442 ORTHO05D006868 4.1e-22 109.4 201 39.3
CANSAT35G1070 Cannabis sativa HOM05D000442 ORTHO05D006868 5.4e-22 109.0 202 39.6
Hma1.2p1_0020F.1_g014175 Hydrangea macrophylla HOM05D000442 ORTHO05D006868 5.4e-22 109.0 201 39.8
Lj4g0002628 Lotus japonicus HOM05D000442 ORTHO05D006868 7.0e-22 108.6 195 39.0
Solyc08g048500.3 Solanum lycopersicum HOM05D000442 ORTHO05D006868 7.0e-22 108.6 197 39.6
vmacro03341 Vaccinium macrocarpon HOM05D000442 ORTHO05D006868 7.0e-22 108.6 201 41.8
BolC3t16651H Brassica oleracea HOM05D000209 ORTHO05D000129 9.2e-22 108.2 70 84.3
ECA234G2123 Erigeron canadensis HOM05D000442 ORTHO05D006868 9.2e-22 108.2 195 42.1
Lalb_Chr15g0086741 Lupinus albus HOM05D000442 ORTHO05D006868 2.0e-21 107.1 202 37.6
C03p43830 Brassica napus HOM05D000209 ORTHO05D000129 2.7e-21 106.7 84 73.8
Sopen08g010860 Solanum pennellii HOM05D000442 ORTHO05D006868 2.7e-21 106.7 200 38.5
PGSC0003DMG400029870 Solanum tuberosum HOM05D000442 ORTHO05D006868 2.7e-21 106.7 201 38.8
COL.COLO4_31040 Corchorus olitorius HOM05D000442 ORTHO05D006868 4.6e-21 105.9 200 37.5
Potri.004G066100 Populus trichocarpa HOM05D000442 ORTHO05D006868 4.6e-21 105.9 196 39.3
ClCG01G024740 Citrullus lanatus HOM05D000442 ORTHO05D006868 6.0e-21 105.5 202 39.6
HanXRQChr16g0525791 Helianthus annuus HOM05D000442 ORTHO05D006868 6.0e-21 105.5 93 61.3
FAN25G3287 Fragaria x ananassa HOM05D000442 ORTHO05D006868 7.8e-21 105.1 179 41.9
Peaxi162Scf00317g00017 Petunia axillaris HOM05D000442 ORTHO05D006868 7.8e-21 105.1 201 37.8
TPR.G26226 Trifolium pratense HOM05D000442 ORTHO05D006868 7.8e-21 105.1 192 38.5
Ca_00528_v3 Cicer arietinum L. HOM05D000442 ORTHO05D006868 1.0e-20 104.8 195 39.0
Hma1.2p1_0185F.1_g081430 Hydrangea macrophylla HOM05D000442 ORTHO05D006868 1.0e-20 104.8 202 38.1
MSTRG.16254 Avicennia marina HOM05D000442 ORTHO05D006868 1.3e-20 104.4 93 61.3
CAN.G42.15 Capsicum annuum HOM05D000442 ORTHO05D006868 1.7e-20 104.0 195 38.5
Psat7g081200 Pisum sativum HOM05D000442 ORTHO05D006868 3.0e-20 103.2 202 37.6
Glyma.05G141800 Glycine max HOM05D000442 ORTHO05D006868 6.6e-20 102.1 92 57.6
Lj6g0008133 Lotus japonicus HOM05D000442 ORTHO05D006868 1.1e-19 101.3 196 35.2
Sed0026453 Sechium edule HOM05D000442 ORTHO05D006868 1.1e-19 101.3 196 38.3
CsaV3_6G051840 Cucumis sativus L. HOM05D000442 ORTHO05D006868 1.5e-19 100.9 202 38.1
Psat0s356g0040 Pisum sativum HOM05D000442 ORTHO05D006868 2.5e-19 100.1 95 55.8
Cc00_g05750 Coffea canephora HOM05D000442 ORTHO05D006868 3.3e-19 99.8 201 36.3
TPR.G13305 Trifolium pratense HOM05D000442 ORTHO05D006868 3.3e-19 99.8 217 34.1
Actinidia39585 Actinidia chinensis HOM05D000442 ORTHO05D006868 4.3e-19 99.4 93 54.8
Lsat_1_v5_gn_4_29701 Lactuca sativa HOM05D000442 ORTHO05D006868 9.5e-19 98.2 93 58.1
Thhalv10027583m.g Eutrema salsugineum HOM05D000442 ORTHO05D006868 1.2e-18 97.8 163 45.4
SGA_v2.0_scaffold1G00194 Striga asiatica HOM05D000442 ORTHO05D006868 1.2e-18 97.8 99 54.5
CDE12G0527 Ceratophyllum demersum HOM05D000442 ORTHO05D006868 1.6e-18 97.4 198 35.4
MBI18_g11241_MAGBIO Magnolia biondii HOM05D000442 ORTHO05D006868 2.1e-18 97.1 177 41.2
Migut.M00894 Erythranthe guttata HOM05D000442 ORTHO05D006868 3.6e-18 96.3 198 37.4
Sed0000914 Sechium edule HOM05D000442 ORTHO05D006868 4.7e-18 95.9 201 37.3
CDE01G0362 Ceratophyllum demersum HOM05D000442 ORTHO05D006868 8.0e-18 95.1 198 36.4
MSTRG.7500 Avicennia marina HOM05D000442 ORTHO05D006868 1.4e-17 94.4 189 39.7
SalBow8G4075 Salvia bowleyana HOM05D000442 ORTHO05D006868 1.4e-17 94.4 93 57.0
HanXRQChr17g0557011 Helianthus annuus HOM05D000442 ORTHO05D006868 1.8e-17 94.0 182 38.5
Hund09657 Selenicereus undatus HOM05D000442 ORTHO05D006868 1.2e-16 91.3 198 35.4
ATR1098G152 Amborella trichopoda HOM05D000442 ORTHO05D006868 2.6e-16 90.1 198 36.9
EL10As5g23566 Beta vulgaris HOM05D000442 ORTHO05D006868 3.4e-16 89.7 197 36.0
PSO541G1231 Papaver somniferum HOM05D000442 ORTHO05D006868 3.4e-16 89.7 196 36.7
AUR62011772 Chenopodium quinoa HOM05D000442 ORTHO05D006868 5.8e-16 89.0 199 35.2
Oeu031181.1 Olea europaea HOM05D000442 ORTHO05D006868 2.2e-15 87.0 164 38.4
PSO675G4648 Papaver somniferum HOM05D000442 ORTHO05D006868 2.9e-15 86.7 196 35.7
arahy.Tifrunner.gnm1.ann1.L0M7VI Arachis hypogaea HOM05D000442 ORTHO05D006868 3.7e-15 86.3 92 53.3
Lj1C1172T8 Lonicera japonica HOM05D000442 ORTHO05D006868 4.9e-15 85.9 93 49.5
unitig_37.g12096 Utricularia gibba HOM05D000442 ORTHO05D006868 4.9e-15 85.9 160 36.2
Ah.02g112480 Amaranthus hybridus HOM05D000442 ORTHO05D006868 1.1e-14 84.7 91 56.0
AUR62024615 Chenopodium quinoa HOM05D000442 ORTHO05D006868 1.1e-14 84.7 180 36.1
Zm00001eb413550 Zea mays HOM05D000442 ORTHO05D006868 1.1e-14 84.7 160 34.4
Sc17g0000310 Simmondsia chinensis HOM05D000442 ORTHO05D006868 1.9e-14 84.0 93 54.8
Oeu034131.1 Olea europaea HOM05D000442 ORTHO05D006868 4.6e-13 79.3 112 44.6
BraA09t39602Z Brassica rapa HOM05D001111 ORTHO05D000939 4.7e-10 69.3 121 43.8
C05p22910 Brassica napus HOM05D001111 ORTHO05D000939 6.2e-10 68.9 114 46.5
MELO3C007123.2 Cucumis melo HOM05D000442 ORTHO05D006868 1.4e-09 67.8 202 32.7
BcaNung06891 Brassica carinata HOM05D001111 ORTHO05D000939 1.8e-09 67.4 114 45.6
BolC5t30991H Brassica oleracea HOM05D001111 ORTHO05D000939 1.8e-09 67.4 114 45.6
A09p41100 Brassica napus HOM05D001111 ORTHO05D000939 5.2e-09 65.9 121 42.1
BcaB07g32354 Brassica carinata HOM05D001111 ORTHO05D000939 2.6e-08 63.5 126 42.1
BraA03t13327Z Brassica rapa HOM05D000442 ORTHO05D019979 7.6e-08 62.0 131 38.2
SMO228G0173 Selaginella moellendorffii HOM05D000442 ORTHO05D001979 2.9e-07 60.1 73 46.6
CiPaw.10G090300 Carya illinoinensis HOM05D000442 ORTHO05D006868 1.1e-06 58.2 96 40.6
Mapoly0022s0041 Marchantia polymorpha HOM05D000442 ORTHO05D007032 1.1e-06 58.2 89 42.7
SEGI_25736 Sequoiadendron giganteum HOM05D000442 ORTHO05D007032 2.4e-06 57.0 74 40.5


User provided reference genes

Program Settings