Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p09630 Brassica napus HOM05D013065 ORTHO05D014530 3.4e-83 311.6 156 100.0
BolC9t54715H Brassica oleracea HOM05D013065 ORTHO05D014530 1.0e-79 300.1 156 96.2
C09p18190 Brassica napus HOM05D013065 ORTHO05D014530 3.3e-78 295.0 156 94.9
BcaC04g22874 Brassica carinata HOM05D034395 ORTHO05D031944 1.0e-26 124.0 65 87.7
BolC9t54336H Brassica oleracea HOM05D013065 ORTHO05D014530 1.3e-26 123.6 154 52.6
BolC7t44619H Brassica oleracea HOM05D013065 ORTHO05D014530 5.1e-23 111.7 71 88.7
C07p48340 Brassica napus HOM05D013065 ORTHO05D014530 4.4e-22 108.6 64 90.6
C07p48420 Brassica napus HOM05D013065 ORTHO05D014530 4.4e-22 108.6 64 90.6
BolC7t45356H Brassica oleracea HOM05D013065 ORTHO05D014530 1.7e-21 106.7 130 53.8
C09p14330 Brassica napus HOM05D013065 ORTHO05D014530 8.2e-21 104.4 71 85.9
BcaB03g14575 Brassica carinata HOM05D003631 ORTHO05D004219 1.9e-17 93.2 95 55.8
BcaC01g03273 Brassica carinata HOM05D003631 ORTHO05D004219 4.7e-16 88.6 73 68.5
A03p43790 Brassica napus HOM05D003631 ORTHO05D004219 4.7e-16 88.6 73 68.5
BraA03t13514Z Brassica rapa HOM05D003631 ORTHO05D004219 4.7e-16 88.6 73 68.5
BcaB06g26661 Brassica carinata HOM05D003631 ORTHO05D004219 2.3e-15 86.3 69 65.2
A07p07710 Brassica napus HOM05D003631 ORTHO05D004219 2.3e-15 86.3 69 65.2
BraA07t28564Z Brassica rapa HOM05D003631 ORTHO05D004219 2.3e-15 86.3 69 65.2
C07p11590 Brassica napus HOM05D003631 ORTHO05D004219 5.2e-15 85.1 69 63.8
BolC7t41632H Brassica oleracea HOM05D003631 ORTHO05D004219 5.2e-15 85.1 69 63.8
Thhalv10002655m.g Eutrema salsugineum HOM05D003631 ORTHO05D004219 6.7e-15 84.7 69 63.8
AL3G40110 Arabidopsis lyrata HOM05D003631 ORTHO05D004219 8.8e-15 84.3 73 64.4
Carub.0003s2496 Capsella rubella HOM05D003631 ORTHO05D004219 8.8e-15 84.3 69 65.2
BcaC06g35727 Brassica carinata HOM05D003631 ORTHO05D004219 1.1e-14 84.0 69 62.3
Sp3g22360 Schrenkiella parvula HOM05D003631 ORTHO05D004219 2.0e-14 83.2 69 63.8
THA.LOC104804593 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 3.3e-14 82.4 69 60.9
CARHR100800 Cardamine hirsuta HOM05D003631 ORTHO05D004219 5.7e-14 81.6 73 61.6
C03p54110 Brassica napus HOM05D003631 ORTHO05D004219 9.7e-14 80.9 64 67.2
CANSAT56G0429 Cannabis sativa HOM05D003631 ORTHO05D004219 6.3e-13 78.2 68 61.8
Gorai.010G072100 Gossypium raimondii HOM05D003631 ORTHO05D004219 6.3e-13 78.2 65 61.5
BcaC04g22528 Brassica carinata HOM05D000172 ORTHO05D014530 8.2e-13 77.8 34 97.1
THA.LOC104821638 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 1.1e-12 77.4 69 58.0
Potri.018G081600 Populus trichocarpa HOM05D003631 ORTHO05D004219 1.4e-12 77.0 67 59.7
Prupe.7G232500 Prunus persica HOM05D003631 ORTHO05D004219 1.8e-12 76.6 65 63.1
CANSAT56G1660 Cannabis sativa HOM05D003631 ORTHO05D004219 2.4e-12 76.3 68 60.3
FAN26G2044 Fragaria x ananassa HOM05D003631 ORTHO05D004219 4.1e-12 75.5 67 59.7
BraA03t15391Z Brassica rapa HOM05D013065 ORTHO05D014530 5.3e-12 75.1 38 100.0
Ciclev10009440m.g Citrus clementina HOM05D003631 ORTHO05D004219 5.3e-12 75.1 68 57.4
Gohir.A06G063200 Gossypium hirsutum HOM05D003631 ORTHO05D004219 5.3e-12 75.1 65 60.0
TAR636G2591 Trochodendron aralioides HOM05D003631 ORTHO05D004219 5.3e-12 75.1 63 61.9
A03p63150 Brassica napus HOM05D013065 ORTHO05D014530 7.0e-12 74.7 38 97.4
FvH4_1g04560 Fragaria vesca HOM05D003631 ORTHO05D004219 7.0e-12 74.7 67 59.7
FAN19G0016 Fragaria x ananassa HOM05D003631 ORTHO05D004219 7.0e-12 74.7 67 59.7
Phvul.010G165700 Phaseolus vulgaris HOM05D003631 ORTHO05D004219 7.0e-12 74.7 68 55.9
Lalb_Chr09g0331201 Lupinus albus HOM05D003631 ORTHO05D004219 1.2e-11 73.9 68 54.4
Thecc.09G108900 Theobroma cacao HOM05D003631 ORTHO05D004219 1.2e-11 73.9 67 56.7
TAR624G0826 Trochodendron aralioides HOM05D003631 ORTHO05D004219 1.2e-11 73.9 61 62.3
MD02G1045400 Malus domestica HOM05D003631 ORTHO05D004219 1.6e-11 73.6 68 57.4
Duzib150G1599 Durio zibethinus HOM05D003631 ORTHO05D004219 2.0e-11 73.2 68 58.8
Eucgr.C03819 Eucalyptus grandis HOM05D003631 ORTHO05D004219 2.0e-11 73.2 65 56.9
MBI01_g28041_MAGBIO Magnolia biondii HOM05D003631 ORTHO05D004219 2.0e-11 73.2 68 57.4
Aa31sc29G40 Aethionema arabicum HOM05D003631 ORTHO05D004219 3.5e-11 72.4 72 56.9
FAN23G2002 Fragaria x ananassa HOM05D003631 ORTHO05D004219 3.5e-11 72.4 67 58.2
Nn2g11722 Nelumbo nucifera HOM05D003631 ORTHO05D004219 3.5e-11 72.4 69 52.2
vmacro06223 Vaccinium macrocarpon HOM05D003631 ORTHO05D004219 3.5e-11 72.4 66 56.1
GSVIVG01015380001 Vitis vinifera HOM05D003631 ORTHO05D004219 3.5e-11 72.4 63 58.7
Atru.chr7.1365 Acer truncatum HOM05D003631 ORTHO05D004219 4.5e-11 72.0 65 56.9
Hma1.2p1_1151F.1_g262060 Hydrangea macrophylla HOM05D003631 ORTHO05D004219 4.5e-11 72.0 63 57.1
Oeu014652.1 Olea europaea HOM05D003631 ORTHO05D004219 4.5e-11 72.0 65 56.9
Oeu014653.1 Olea europaea HOM05D003631 ORTHO05D004219 4.5e-11 72.0 65 56.9
QL12p026381 Quercus lobata HOM05D003631 ORTHO05D004219 4.5e-11 72.0 66 56.1
AT3G24570 Arabidopsis thaliana HOM05D003631 ORTHO05D004219 5.9e-11 71.6 83 54.2
Cpa.g.sc23.96 Carica papaya HOM05D003631 ORTHO05D004219 5.9e-11 71.6 61 63.9
Cc06_g09780 Coffea canephora HOM05D003631 ORTHO05D004219 7.7e-11 71.2 68 55.9
COL.COLO4_34847 Corchorus olitorius HOM05D003631 ORTHO05D004219 7.7e-11 71.2 68 57.4
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 7.7e-11 71.2 68 52.9
Sabra18G0068700 Salix brachista HOM05D003631 ORTHO05D004219 1.0e-10 70.9 68 54.4
MELO3C004559.2 Cucumis melo HOM05D003631 ORTHO05D004219 1.3e-10 70.5 70 54.3
CsaV3_2G002230 Cucumis sativus L. HOM05D003631 ORTHO05D004219 1.3e-10 70.5 70 54.3
arahy.Tifrunner.gnm1.ann1.05GVWZ Arachis hypogaea HOM05D003631 ORTHO05D004219 1.7e-10 70.1 68 52.9
arahy.Tifrunner.gnm1.ann1.AAYU95 Arachis hypogaea HOM05D003631 ORTHO05D004219 1.7e-10 70.1 68 52.9
Ca_17334_v3 Cicer arietinum L. HOM05D003631 ORTHO05D004219 1.7e-10 70.1 65 53.8
COL.COLO4_18699 Corchorus olitorius HOM05D003631 ORTHO05D004219 1.7e-10 70.1 60 58.3
Glyma.14G141500 Glycine max HOM05D003631 ORTHO05D004219 1.7e-10 70.1 65 53.8
Manes.16G114800 Manihot esculenta HOM05D003631 ORTHO05D004219 1.7e-10 70.1 63 58.7
Rhsim03G0240900 Rhododendron simsii HOM05D003631 ORTHO05D004219 1.7e-10 70.1 66 53.0
ClCG11G002440 Citrullus lanatus HOM05D003631 ORTHO05D004219 2.2e-10 69.7 65 53.8
RcHm_v2.0_Chr2g0090261 Rosa chinensis HOM05D003631 ORTHO05D004219 2.2e-10 69.7 67 56.7
VMungo0331G0778 Vigna mungo HOM05D003631 ORTHO05D004219 3.8e-10 68.9 65 55.4
Actinidia15729 Actinidia chinensis HOM05D003631 ORTHO05D004219 5.0e-10 68.6 64 54.7
CiPaw.07G207400 Carya illinoinensis HOM05D003631 ORTHO05D004219 5.0e-10 68.6 63 55.6
Glyma.13G074500 Glycine max HOM05D003631 ORTHO05D004219 5.0e-10 68.6 68 51.5
Lalb_Chr11g0064321 Lupinus albus HOM05D003631 ORTHO05D004219 5.0e-10 68.6 65 55.4
MBI04_g29968_MAGBIO Magnolia biondii HOM05D003631 ORTHO05D004219 5.0e-10 68.6 66 54.5
arahy.Tifrunner.gnm1.ann1.YQ2GF9 Arachis hypogaea HOM05D003631 ORTHO05D004219 6.5e-10 68.2 61 55.7
Dinv36643 Davidia involucrata HOM05D003631 ORTHO05D004219 6.5e-10 68.2 51 60.8
Nn8g39151 Nelumbo nucifera HOM05D003631 ORTHO05D004219 6.5e-10 68.2 37 75.7
Nitab4.5_0001567g0050 Nicotiana tabacum HOM05D003631 ORTHO05D004219 6.5e-10 68.2 68 50.0
TWI63G0861 Tripterygium wilfordii HOM05D003631 ORTHO05D004219 6.5e-10 68.2 66 51.5
arahy.Tifrunner.gnm1.ann1.T1GT7D Arachis hypogaea HOM05D003631 ORTHO05D004219 8.5e-10 67.8 61 55.7
AUR62023018 Chenopodium quinoa HOM05D003631 ORTHO05D004219 8.5e-10 67.8 68 50.0
Lj7A707G38 Lonicera japonica HOM05D003631 ORTHO05D004219 8.5e-10 67.8 65 52.3
Phvul.001G078701 Phaseolus vulgaris HOM05D003631 ORTHO05D004219 8.5e-10 67.8 65 52.3
Thecc.09G039600 Theobroma cacao HOM05D003631 ORTHO05D004219 8.5e-10 67.8 60 55.0
MSTRG.1652 Avicennia marina HOM05D003631 ORTHO05D004219 1.1e-09 67.4 67 50.7
Cfa013342 Carpinus fangiana HOM05D003631 ORTHO05D004219 1.1e-09 67.4 63 54.0
Gohir.D05G025300 Gossypium hirsutum HOM05D003631 ORTHO05D004219 1.1e-09 67.4 67 50.7
Gorai.009G025400 Gossypium raimondii HOM05D003631 ORTHO05D004219 1.1e-09 67.4 67 50.7
Psat6g034240 Pisum sativum HOM05D003631 ORTHO05D004219 1.1e-09 67.4 59 59.3
GSVIVG01035673001 Vitis vinifera HOM05D003631 ORTHO05D004219 1.1e-09 67.4 67 52.2
Lsat_1_v5_gn_1_49860 Lactuca sativa HOM05D003631 ORTHO05D004219 1.5e-09 67.0 68 51.5
Rhsim07G0153300 Rhododendron simsii HOM05D003631 ORTHO05D004219 1.5e-09 67.0 67 50.7
Sc09g0009080 Simmondsia chinensis HOM05D003631 ORTHO05D004219 1.5e-09 67.0 67 52.2
VMungo0647G2237 Vigna mungo HOM05D003631 ORTHO05D004219 1.5e-09 67.0 65 55.4
Migut.E01509 Erythranthe guttata HOM05D003631 ORTHO05D004219 1.9e-09 66.6 71 50.7
Gohir.A08G250900 Gossypium hirsutum HOM05D003631 ORTHO05D004219 1.9e-09 66.6 62 56.5
Gohir.D06G061900 Gossypium hirsutum HOM05D003631 ORTHO05D004219 1.9e-09 66.6 34 79.4
Nitab4.5_0000664g0300 Nicotiana tabacum HOM05D003631 ORTHO05D004219 1.9e-09 66.6 68 48.5
Psat7g013480 Pisum sativum HOM05D003631 ORTHO05D004219 1.9e-09 66.6 68 50.0
MSTRG.14009 Avicennia marina HOM05D003631 ORTHO05D004219 2.5e-09 66.2 67 49.3
Lj4g0024734 Lotus japonicus HOM05D003631 ORTHO05D004219 2.5e-09 66.2 65 53.8
Sed0024476 Sechium edule HOM05D003631 ORTHO05D004219 2.5e-09 66.2 69 50.7
Ca_12813_v3 Cicer arietinum L. HOM05D003631 ORTHO05D004219 3.2e-09 65.9 63 57.1
Oeu012180.1 Olea europaea HOM05D003631 ORTHO05D004219 3.2e-09 65.9 65 50.8
Solyc11g071330.3 Solanum lycopersicum HOM05D003631 ORTHO05D004219 3.2e-09 65.9 68 48.5
Sopen11g029010 Solanum pennellii HOM05D003631 ORTHO05D004219 3.2e-09 65.9 68 48.5
TWI34G0985 Tripterygium wilfordii HOM05D003631 ORTHO05D004219 3.2e-09 65.9 66 50.0
Glyma.08G038300 Glycine max HOM05D003631 ORTHO05D004219 4.2e-09 65.5 67 50.7
Lalb_Chr23g0269431 Lupinus albus HOM05D003631 ORTHO05D004219 4.2e-09 65.5 59 57.6
PGSC0003DMG400018567 Solanum tuberosum HOM05D003631 ORTHO05D004219 4.2e-09 65.5 67 49.3
Ah.16g105220 Amaranthus hybridus HOM05D003631 ORTHO05D004219 5.5e-09 65.1 68 48.5
CAN.G309.79 Capsicum annuum HOM05D003631 ORTHO05D004219 5.5e-09 65.1 67 47.8
Duzib150G0491 Durio zibethinus HOM05D003631 ORTHO05D004219 5.5e-09 65.1 62 53.2
PSO782G4304 Papaver somniferum HOM05D003631 ORTHO05D004219 5.5e-09 65.1 74 45.9
PSO832G3257 Papaver somniferum HOM05D003631 ORTHO05D004219 5.5e-09 65.1 74 45.9
ECA233G4084 Erigeron canadensis HOM05D006435 ORTHO05D008262 7.2e-09 64.7 68 48.5
Eucgr.C02890 Eucalyptus grandis HOM05D003631 ORTHO05D004219 7.2e-09 64.7 63 50.8
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 7.2e-09 64.7 67 50.7
TPR.G23442 Trifolium pratense HOM05D003631 ORTHO05D004219 9.4e-09 64.3 67 50.7
Lj7A652G70 Lonicera japonica HOM05D003631 ORTHO05D004219 1.2e-08 63.9 59 55.9
PSO063G0959 Papaver somniferum HOM05D003631 ORTHO05D004219 1.2e-08 63.9 69 49.3
SGA_v2.0_scaffold163G38087 Striga asiatica HOM05D003631 ORTHO05D004219 1.2e-08 63.9 65 49.2
DCAR_024691 Daucus carota HOM05D003631 ORTHO05D004219 1.6e-08 63.5 67 49.3
DCAR_031967 Daucus carota HOM05D003631 ORTHO05D004219 1.6e-08 63.5 67 49.3
HanXRQChr01g0029581 Helianthus annuus HOM05D003631 ORTHO05D004219 1.6e-08 63.5 68 47.1
PGR044G0672 Punica granatum HOM05D003631 ORTHO05D004219 1.6e-08 63.5 65 52.3
BraA06t24906Z Brassica rapa HOM05D013065 ORTHO05D014530 2.1e-08 63.2 131 40.5
ECA248G3192 Erigeron canadensis HOM05D003631 ORTHO05D004219 2.1e-08 63.2 68 47.1
FvH4_2g36140 Fragaria vesca HOM05D003631 ORTHO05D004219 2.1e-08 63.2 60 53.3
FAN15G1152 Fragaria x ananassa HOM05D003631 ORTHO05D004219 2.1e-08 63.2 60 53.3
FAN20G1208 Fragaria x ananassa HOM05D003631 ORTHO05D004219 2.1e-08 63.2 60 53.3
FAN27G1133 Fragaria x ananassa HOM05D003631 ORTHO05D004219 2.1e-08 63.2 60 53.3
RcHm_v2.0_Chr6g0305731 Rosa chinensis HOM05D003631 ORTHO05D004219 2.1e-08 63.2 60 53.3
Aqoxy7G03847 Aquilegia oxysepala HOM05D003631 ORTHO05D004219 2.7e-08 62.8 64 51.6
CiPaw.08G023400 Carya illinoinensis HOM05D003631 ORTHO05D004219 2.7e-08 62.8 67 50.7
Gohir.A05G023800 Gossypium hirsutum HOM05D003631 ORTHO05D004219 2.7e-08 62.8 63 52.4
Lj1g0005663 Lotus japonicus HOM05D003631 ORTHO05D004219 2.7e-08 62.8 59 52.5
Medtr1g008350 Medicago truncatula HOM05D003631 ORTHO05D004219 2.7e-08 62.8 59 55.9
CDE05G3059 Ceratophyllum demersum HOM05D003631 ORTHO05D004219 3.6e-08 62.4 63 50.8
Duzib187G0575 Durio zibethinus HOM05D003631 ORTHO05D004219 3.6e-08 62.4 62 51.6
FAN28G0644 Fragaria x ananassa HOM05D003631 ORTHO05D004219 3.6e-08 62.4 72 52.8
CDE05G1732 Ceratophyllum demersum HOM05D004541 ORTHO05D006163 4.7e-08 62.0 63 50.8
HanXRQChr10g0313001 Helianthus annuus HOM05D003631 ORTHO05D004219 4.7e-08 62.0 65 50.8
Medtr8g103490 Medicago truncatula HOM05D003631 ORTHO05D004219 4.7e-08 62.0 65 49.2
Prupe.1G452800 Prunus persica HOM05D003631 ORTHO05D004219 4.7e-08 62.0 59 54.2
SMO301G0049 Selaginella moellendorffii HOM05D003631 ORTHO05D004219 4.7e-08 62.0 66 54.5
HPP92_000527 Vanilla planifolia HOM05D003631 ORTHO05D004219 4.7e-08 62.0 65 47.7
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 6.1e-08 61.6 65 47.7
MD15G1098000 Malus domestica HOM05D003631 ORTHO05D004219 6.1e-08 61.6 62 51.6
Manes.03G062700 Manihot esculenta HOM05D003631 ORTHO05D004219 6.1e-08 61.6 61 52.5
HanXRQChr02g0048081 Helianthus annuus HOM05D003631 ORTHO05D004219 8.0e-08 61.2 61 49.2
Potri.018G037100 Populus trichocarpa HOM05D003631 ORTHO05D004219 1.0e-07 60.8 66 47.0
THA.LOC104815150 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 1.0e-07 60.8 57 56.1
unitig_578.g16597 Utricularia gibba HOM05D003631 ORTHO05D004219 1.0e-07 60.8 65 47.7
CSS0042874 Camellia sinensis var. sinensis HOM05D003631 ORTHO05D004219 1.4e-07 60.5 63 50.8
Ciclev10009403m.g Citrus clementina HOM05D003631 ORTHO05D004219 1.4e-07 60.5 63 54.0
Gohir.D08G272400 Gossypium hirsutum HOM05D003631 ORTHO05D004219 1.4e-07 60.5 62 51.6
Sc08g0007510 Simmondsia chinensis HOM05D003631 ORTHO05D004219 1.4e-07 60.5 34 73.5
Gorai.004G290800 Gossypium raimondii HOM05D003631 ORTHO05D004219 1.8e-07 60.1 62 53.2
PSO210G4261 Papaver somniferum HOM05D003631 ORTHO05D004219 1.8e-07 60.1 62 54.8
vmacro05360 Vaccinium macrocarpon HOM05D003631 ORTHO05D004219 1.8e-07 60.1 60 53.3
Sabra18G0037800 Salix brachista HOM05D003631 ORTHO05D000007 2.3e-07 59.7 61 50.8
A06p18220 Brassica napus HOM05D013065 ORTHO05D014530 3.0e-07 59.3 135 40.7
PSO210G6180 Papaver somniferum HOM05D003631 ORTHO05D004219 3.0e-07 59.3 62 54.8
SalBow1G6702 Salvia bowleyana HOM05D003631 ORTHO05D004219 3.0e-07 59.3 63 47.6
SEGI_07691 Sequoiadendron giganteum HOM05D003631 ORTHO05D004219 3.0e-07 59.3 31 77.4
Os01g0228300 Oryza sativa ssp. japonica HOM05D003631 ORTHO05D004219 4.0e-07 58.9 63 46.0
Lsat_1_v5_gn_6_11000 Lactuca sativa HOM05D003631 ORTHO05D004219 1.2e-06 57.4 61 50.8
BcaC01g02689 Brassica carinata HOM05D003631 ORTHO05D004219 2.0e-06 56.6 68 52.9
Lalb_Chr05g0222891 Lupinus albus HOM05D003631 ORTHO05D004219 2.6e-06 56.2 68 42.6
Zm00001eb339190 Zea mays HOM05D003631 ORTHO05D004219 9.7e-06 54.3 57 50.9


User provided reference genes

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