Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 8.8e-47 189.9 92 100.0
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 5.7e-46 187.2 92 98.9
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 1.1e-17 93.2 70 71.4
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.6e-16 89.4 70 61.4
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 4.7e-16 87.8 71 62.0
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 4.7e-16 87.8 71 62.0
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 4.7e-16 87.8 71 62.0
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 4.7e-16 87.8 71 62.0
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 6.1e-16 87.4 71 62.0
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.0e-15 86.7 72 65.3
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 2.3e-15 85.5 71 59.2
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 2.3e-15 85.5 71 59.2
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 2.3e-15 85.5 71 59.2
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.0e-15 85.1 60 68.3
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.0e-15 85.1 69 60.9
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.0e-15 85.1 82 56.1
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 4.0e-15 84.7 71 59.2
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 5.2e-15 84.3 68 61.8
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 6.8e-15 84.0 71 57.7
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 2.6e-14 82.0 68 60.3
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 4.4e-14 81.3 71 57.7
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 4.4e-14 81.3 71 57.7
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.7e-13 79.3 58 65.5
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 2.2e-13 79.0 58 65.5
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.0e-11 72.4 61 55.7
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 2.7e-11 72.0 53 58.5
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.5e-11 71.6 60 55.0
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 4.5e-11 71.2 54 55.6
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 4.5e-11 71.2 58 53.4
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 5.9e-11 70.9 73 49.3
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 7.8e-11 70.5 53 54.7
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 7.8e-11 70.5 53 54.7
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 7.8e-11 70.5 53 54.7
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 7.8e-11 70.5 82 41.5
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.0e-10 70.1 53 56.6
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.7e-10 69.3 69 49.3
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.7e-10 69.3 54 53.7
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 2.3e-10 68.9 54 53.7
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.9e-10 68.6 54 51.9
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.9e-10 68.6 53 58.5
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.9e-10 68.6 54 53.7
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.9e-10 68.6 82 41.5
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 2.9e-10 68.6 57 59.6
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.9e-10 68.6 57 59.6
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.8e-10 68.2 76 44.7
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 3.8e-10 68.2 57 59.6
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 3.8e-10 68.2 57 52.6
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 3.8e-10 68.2 53 58.5
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 3.8e-10 68.2 51 56.9
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 5.0e-10 67.8 57 50.9
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 5.0e-10 67.8 57 59.6
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 6.6e-10 67.4 71 46.5
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 8.6e-10 67.0 54 51.9
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 8.6e-10 67.0 61 47.5
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 8.6e-10 67.0 61 47.5
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 8.6e-10 67.0 51 56.9
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.1e-09 66.6 72 41.7
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.5e-09 66.2 53 54.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.5e-09 66.2 60 48.3
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.5e-09 66.2 58 50.0
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.9e-09 65.9 54 53.7
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.9e-09 65.9 53 49.1
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.9e-09 65.9 50 58.0
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 1.9e-09 65.9 53 50.9
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 2.5e-09 65.5 54 51.9
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.3e-09 65.1 57 57.9
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.3e-09 65.1 54 50.0
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.3e-09 64.7 56 58.9
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.3e-09 64.7 56 58.9
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 5.6e-09 64.3 61 47.5
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 5.6e-09 64.3 53 50.9
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 7.3e-09 63.9 54 51.9
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 9.5e-09 63.5 54 53.7
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 9.5e-09 63.5 54 50.0
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.2e-08 63.2 51 54.9
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.2e-08 63.2 54 50.0
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.2e-08 63.2 54 48.1
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.6e-08 62.8 54 50.0
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.6e-08 62.8 54 48.1
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.6e-08 62.8 54 48.1
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.6e-08 62.8 58 46.6
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.6e-08 62.8 71 43.7
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 2.1e-08 62.4 69 44.9
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.8e-08 62.0 54 48.1
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.7e-08 61.2 71 42.3
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 4.7e-08 61.2 52 53.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 8.0e-08 60.5 51 47.1
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 8.0e-08 60.5 58 50.0
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.0e-08 60.5 53 49.1
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.0e-08 60.5 53 49.1
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-07 60.1 50 52.0
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.0e-07 60.1 54 46.3
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 1.4e-07 59.7 53 50.9
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 1.8e-07 59.3 59 44.1
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.8e-07 59.3 49 53.1
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.3e-07 58.9 51 52.9
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.3e-07 58.9 51 52.9
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 2.3e-07 58.9 51 49.0
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 2.3e-07 58.9 54 44.4
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 3.0e-07 58.5 54 44.4
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 3.0e-07 58.5 54 44.4
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 4.0e-07 58.2 54 42.6
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 4.0e-07 58.2 54 46.3
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 4.0e-07 58.2 51 54.9
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 5.2e-07 57.8 54 46.3
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 5.2e-07 57.8 54 44.4
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 5.2e-07 57.8 58 41.4
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.9e-07 57.0 53 45.3
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 8.9e-07 57.0 51 47.1
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 8.9e-07 57.0 54 46.3
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.2e-06 56.6 53 43.4
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.2e-06 56.6 51 51.0
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.5e-06 56.2 51 51.0
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.5e-06 56.2 51 51.0
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 2.6e-06 55.5 54 44.4
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 3.4e-06 55.1 51 49.0
BcaB06g26460 Brassica carinata HOM05D004405 ORTHO05D095050 3.4e-06 55.1 65 47.7
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.4e-06 55.1 51 49.0
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 4.4e-06 54.7 52 46.2
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 5.7e-06 54.3 50 48.0
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 9.8e-06 53.5 52 48.1
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 9.8e-06 53.5 53 45.3


User provided reference genes

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