Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-28 128.3 66 100.0
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 8.6e-20 99.8 54 92.6
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 3.3e-19 97.8 57 87.7
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 3.3e-19 97.8 54 88.9
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 3.3e-19 97.8 54 88.9
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 3.6e-18 94.4 50 94.0
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 3.6e-18 94.4 54 87.0
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 3.6e-18 94.4 50 94.0
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 3.6e-18 94.4 50 94.0
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 3.6e-18 94.4 50 94.0
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 3.6e-18 94.4 50 94.0
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 3.6e-18 94.4 50 94.0
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 3.6e-18 94.4 50 94.0
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 3.6e-18 94.4 50 94.0
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 3.6e-18 94.4 50 94.0
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 4.7e-18 94.0 50 92.0
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 1.0e-17 92.8 50 92.0
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.0e-17 92.8 50 92.0
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 3.0e-17 91.3 50 90.0
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 3.0e-17 91.3 50 92.0
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 3.0e-17 91.3 50 90.0
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 4.0e-17 90.9 50 90.0
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 5.2e-17 90.5 50 90.0
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 5.2e-17 90.5 50 90.0
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 6.8e-17 90.1 50 88.0
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 8.9e-17 89.7 50 88.0
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-16 89.4 50 88.0
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-16 89.4 50 90.0
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-16 89.4 50 90.0
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 1.2e-16 89.4 50 90.0
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.2e-16 89.4 50 88.0
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 1.2e-16 89.4 50 86.0
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 1.2e-16 89.4 50 86.0
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.2e-16 89.4 50 86.0
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 2.0e-16 88.6 50 86.0
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 2.0e-16 88.6 50 86.0
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 2.0e-16 88.6 50 86.0
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 2.0e-16 88.6 50 86.0
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 88.0
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 2.6e-16 88.2 51 90.2
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 2.6e-16 88.2 51 90.2
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 2.6e-16 88.2 51 90.2
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 2.6e-16 88.2 54 85.2
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 2.6e-16 88.2 50 84.0
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 3.4e-16 87.8 50 86.0
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 3.4e-16 87.8 49 87.8
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 3.4e-16 87.8 50 84.0
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 4.4e-16 87.4 50 86.0
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 4.4e-16 87.4 50 84.0
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 5.7e-16 87.0 50 86.0
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 5.7e-16 87.0 50 82.0
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 5.7e-16 87.0 50 84.0
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 5.7e-16 87.0 50 82.0
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 5.7e-16 87.0 50 84.0
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 5.7e-16 87.0 50 82.0
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 5.7e-16 87.0 50 82.0
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 5.7e-16 87.0 50 82.0
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 5.7e-16 87.0 50 82.0
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 7.5e-16 86.7 50 86.0
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 7.5e-16 86.7 50 80.0
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 7.5e-16 86.7 49 87.8
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 7.5e-16 86.7 49 87.8
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 7.5e-16 86.7 49 85.7
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 7.5e-16 86.7 50 82.0
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 9.8e-16 86.3 49 85.7
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 9.8e-16 86.3 49 85.7
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 9.8e-16 86.3 50 84.0
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 9.8e-16 86.3 56 73.2
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.3e-15 85.9 50 84.0
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.3e-15 85.9 50 84.0
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 1.3e-15 85.9 50 82.0
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 2.2e-15 85.1 50 82.0
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.2e-15 85.1 50 80.0
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.8e-15 84.7 50 80.0
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.8e-15 84.7 50 80.0
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 2.8e-15 84.7 50 80.0
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 2.8e-15 84.7 50 80.0
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 2.8e-15 84.7 50 82.0
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 2.8e-15 84.7 50 80.0
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 2.8e-15 84.7 50 82.0
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 3.7e-15 84.3 50 80.0
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 3.7e-15 84.3 50 80.0
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 3.7e-15 84.3 50 80.0
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 3.7e-15 84.3 50 76.0
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 3.7e-15 84.3 50 78.0
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 6.3e-15 83.6 50 78.0
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 6.3e-15 83.6 50 78.0
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 6.3e-15 83.6 50 82.0
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 8.3e-15 83.2 50 78.0
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 8.3e-15 83.2 50 82.0
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 8.3e-15 83.2 50 80.0
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 8.3e-15 83.2 50 78.0
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 8.3e-15 83.2 50 78.0
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.1e-14 82.8 50 80.0
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.1e-14 82.8 50 78.0
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 1.1e-14 82.8 50 76.0
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.1e-14 82.8 50 80.0
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.1e-14 82.8 50 80.0
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.1e-14 82.8 49 81.6
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 1.1e-14 82.8 49 81.6
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.1e-14 82.8 50 78.0
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 1.1e-14 82.8 50 76.0
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.1e-14 82.8 50 80.0
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 1.4e-14 82.4 50 78.0
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.4e-14 82.4 50 78.0
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.4e-14 82.4 50 78.0
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.8e-14 82.0 49 79.6
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.8e-14 82.0 49 79.6
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 1.8e-14 82.0 50 76.0
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 2.4e-14 81.6 50 76.0
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 2.4e-14 81.6 50 78.0
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 4.1e-14 80.9 49 77.6
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 4.1e-14 80.9 50 78.0
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 5.4e-14 80.5 50 74.0
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 5.4e-14 80.5 50 74.0
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 5.4e-14 80.5 47 85.1
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 9.2e-14 79.7 47 80.9
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 9.2e-14 79.7 46 80.4
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 9.2e-14 79.7 61 68.9
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 1.2e-13 79.3 50 74.0
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 1.2e-13 79.3 50 74.0
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.6e-13 79.0 56 73.2
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 2.7e-13 78.2 50 72.0
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 4.5e-13 77.4 47 76.6
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.0e-12 76.3 50 72.0
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.0e-12 76.3 50 72.0
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.3e-12 75.1 46 76.1
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.3e-12 75.1 46 76.1
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 2.9e-12 74.7 47 76.6
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 6.6e-12 73.6 40 87.5
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 1.9e-11 72.0 46 73.9
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.5e-11 71.6 78 53.8
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 4.3e-11 70.9 50 62.0
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 7.3e-11 70.1 52 73.1
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.2e-10 69.3 50 64.0
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.6e-10 67.8 39 87.2
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 4.7e-10 67.4 46 67.4
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 6.1e-10 67.0 50 66.0
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 6.1e-10 67.0 45 68.9
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 8.0e-10 66.6 45 64.4
BcaC07g37429 Brassica carinata HOM05D003833 ORTHO05D004209 5.2e-09 63.9 34 94.1
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 2.0e-08 62.0 50 52.0
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 5.8e-08 60.5 47 68.1
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 7.5e-08 60.1 50 52.0
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 7.5e-08 60.1 35 82.9
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 9.8e-08 59.7 45 66.7
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.3e-07 59.3 49 63.3
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.7e-07 58.9 50 52.0
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 1.7e-07 58.9 45 62.2
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-07 58.5 72 52.8
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 2.9e-07 58.2 33 84.8
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.9e-07 57.4 40 65.0
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 2.4e-06 55.1 30 80.0
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 3.2e-06 54.7 50 60.0


User provided reference genes

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