Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p08260 Brassica napus HOM05D000522 ORTHO05D042020 4.1e-47 191.0 95 100.0
BolC8t47678H Brassica oleracea HOM05D000522 ORTHO05D042020 4.1e-47 191.0 95 100.0
Carub.0007s2921 Capsella rubella HOM05D000522 ORTHO05D004380 1.4e-18 96.3 76 69.7
CARHR218930 Cardamine hirsuta HOM05D000522 ORTHO05D004380 5.2e-18 94.4 76 68.4
AL9U10300 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 6.8e-18 94.0 75 69.3
BcaB03g16093 Brassica carinata HOM05D000522 ORTHO05D004380 6.8e-18 94.0 75 69.3
BcaC02g09431 Brassica carinata HOM05D000522 ORTHO05D004380 6.8e-18 94.0 75 69.3
A04p08740 Brassica napus HOM05D000522 ORTHO05D004380 6.8e-18 94.0 75 69.3
BolC4t25830H Brassica oleracea HOM05D000522 ORTHO05D004380 6.8e-18 94.0 75 69.3
BraA04t16571Z Brassica rapa HOM05D000522 ORTHO05D004380 6.8e-18 94.0 75 69.3
Sp7g10940 Schrenkiella parvula HOM05D000522 ORTHO05D004380 6.8e-18 94.0 75 69.3
Thhalv10025298m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 8.8e-18 93.6 74 70.3
AT4G13360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 2.6e-17 92.0 75 68.0
C04p42550 Brassica napus HOM05D000522 ORTHO05D004380 2.6e-17 92.0 75 68.0
Aa31LG8G11100 Aethionema arabicum HOM05D000522 ORTHO05D004380 1.7e-16 89.4 62 74.2
THA.LOC104808747 Tarenaya hassleriana HOM05D000522 ORTHO05D004380 2.2e-16 89.0 76 63.2
Aa31LG9G4380 Aethionema arabicum HOM05D000522 ORTHO05D004380 3.7e-16 88.2 64 73.4
AL3G39830 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 4.8e-16 87.8 74 66.2
BcaB03g14587 Brassica carinata HOM05D000522 ORTHO05D004380 1.4e-15 86.3 64 68.8
Thhalv10002535m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 1.4e-15 86.3 64 68.8
AT3G24360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 1.8e-15 85.9 64 70.3
Duzib168G0832 Durio zibethinus HOM05D000522 ORTHO05D004380 1.8e-15 85.9 76 61.8
Manes.03G069100 Manihot esculenta HOM05D000522 ORTHO05D004380 1.8e-15 85.9 64 70.3
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 3.1e-15 85.1 64 65.6
FAN28G2217 Fragaria x ananassa HOM05D000522 ORTHO05D004380 3.1e-15 85.1 64 65.6
Atru.chr7.1299 Acer truncatum HOM05D000522 ORTHO05D004380 4.1e-15 84.7 52 78.8
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 4.1e-15 84.7 64 65.6
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 4.1e-15 84.7 64 65.6
Sp3g22170 Schrenkiella parvula HOM05D000522 ORTHO05D004380 4.1e-15 84.7 76 63.2
Cpa.g.sc23.137 Carica papaya HOM05D000522 ORTHO05D004380 5.4e-15 84.3 52 78.8
PSO063G3875 Papaver somniferum HOM05D000522 ORTHO05D004380 5.4e-15 84.3 64 68.8
BcaC01g03316 Brassica carinata HOM05D000522 ORTHO05D004380 7.0e-15 84.0 64 67.2
A03p43630 Brassica napus HOM05D000522 ORTHO05D004380 7.0e-15 84.0 64 67.2
C03p53740 Brassica napus HOM05D000522 ORTHO05D004380 7.0e-15 84.0 64 67.2
BolC3t17634H Brassica oleracea HOM05D000522 ORTHO05D004380 7.0e-15 84.0 64 67.2
BraA03t13500Z Brassica rapa HOM05D000522 ORTHO05D004380 7.0e-15 84.0 64 67.2
PSO782G3947 Papaver somniferum HOM05D000522 ORTHO05D004380 7.0e-15 84.0 64 67.2
Duzib150G0749 Durio zibethinus HOM05D000522 ORTHO05D004380 9.1e-15 83.6 64 67.2
Duzib187G0776 Durio zibethinus HOM05D000522 ORTHO05D004380 9.1e-15 83.6 64 68.8
Gohir.A07G003600 Gossypium hirsutum HOM05D000522 ORTHO05D004380 9.1e-15 83.6 76 60.5
Gohir.A13G196800 Gossypium hirsutum HOM05D000522 ORTHO05D004380 9.1e-15 83.6 64 67.2
Sc08g0007180 Simmondsia chinensis HOM05D000522 ORTHO05D004380 9.1e-15 83.6 76 60.5
Carub.0003s2470 Capsella rubella HOM05D000522 ORTHO05D004380 1.2e-14 83.2 74 63.5
FvH4_1g05350 Fragaria vesca HOM05D000522 ORTHO05D004380 1.2e-14 83.2 64 64.1
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.2e-14 83.2 64 64.1
MD15G1189500 Malus domestica HOM05D000522 ORTHO05D004380 1.2e-14 83.2 76 60.5
Nitab4.5_0008529g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 1.2e-14 83.2 76 60.5
Lalb_Chr05g0222651 Lupinus albus HOM05D000522 ORTHO05D004380 1.6e-14 82.8 64 68.8
Nn8g39261 Nelumbo nucifera HOM05D000522 ORTHO05D004380 1.6e-14 82.8 64 65.6
CANSAT56G3220 Cannabis sativa HOM05D000522 ORTHO05D004380 2.0e-14 82.4 64 65.6
CANSAT56G3667 Cannabis sativa HOM05D000522 ORTHO05D004380 2.0e-14 82.4 64 65.6
CDE02G2108 Ceratophyllum demersum HOM05D000522 ORTHO05D004380 2.0e-14 82.4 52 73.1
DCAR_012089 Daucus carota HOM05D000522 ORTHO05D004380 2.0e-14 82.4 76 55.3
Gohir.D13G202100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 2.0e-14 82.4 64 65.6
Gorai.013G231000 Gossypium raimondii HOM05D000522 ORTHO05D004380 2.0e-14 82.4 64 65.6
MD02G1056500 Malus domestica HOM05D000522 ORTHO05D004380 2.0e-14 82.4 76 60.5
QL02p086017 Quercus lobata HOM05D000522 ORTHO05D004380 2.0e-14 82.4 64 67.2
VMungo0251G1337 Vigna mungo HOM05D000522 ORTHO05D004380 2.0e-14 82.4 64 67.2
Prupe.7G227300 Prunus persica HOM05D000522 ORTHO05D004380 2.7e-14 82.0 64 65.6
RcHm_v2.0_Chr2g0091031 Rosa chinensis HOM05D000522 ORTHO05D004380 2.7e-14 82.0 64 64.1
Sed0015283 Sechium edule HOM05D000522 ORTHO05D004380 2.7e-14 82.0 64 65.6
CARHR100460 Cardamine hirsuta HOM05D000522 ORTHO05D004380 3.5e-14 81.6 64 68.8
Ciclev10008327m.g Citrus clementina HOM05D000522 ORTHO05D004380 3.5e-14 81.6 64 67.2
Eucgr.C01076 Eucalyptus grandis HOM05D000522 ORTHO05D004380 3.5e-14 81.6 64 65.6
Gohir.D07G004100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 3.5e-14 81.6 76 59.2
Gorai.001G003700 Gossypium raimondii HOM05D000522 ORTHO05D004380 3.5e-14 81.6 76 59.2
Lalb_Chr16g0387971 Lupinus albus HOM05D000522 ORTHO05D004380 3.5e-14 81.6 64 67.2
Nn2g11819 Nelumbo nucifera HOM05D000522 ORTHO05D004380 4.5e-14 81.3 64 65.6
Phvul.002G314900 Phaseolus vulgaris HOM05D000522 ORTHO05D004380 4.5e-14 81.3 64 65.6
Solyc05g018417.1 Solanum lycopersicum HOM05D000522 ORTHO05D004380 4.5e-14 81.3 64 67.2
Sopen05g015250 Solanum pennellii HOM05D000522 ORTHO05D004380 4.5e-14 81.3 64 67.2
Aqoxy7G01827 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 5.9e-14 80.9 64 67.2
Nitab4.5_0002363g0030 Nicotiana tabacum HOM05D000522 ORTHO05D004380 5.9e-14 80.9 76 59.2
Psat7g012360 Pisum sativum HOM05D000522 ORTHO05D004380 5.9e-14 80.9 76 57.9
Thecc.09G114500 Theobroma cacao HOM05D000522 ORTHO05D004380 5.9e-14 80.9 64 67.2
CAN.G32.1 Capsicum annuum HOM05D000522 ORTHO05D004380 7.7e-14 80.5 64 65.6
Actinidia20339 Actinidia chinensis HOM05D000522 ORTHO05D004380 1.0e-13 80.1 64 62.5
Glyma.08G040000 Glycine max HOM05D000522 ORTHO05D004380 1.0e-13 80.1 64 65.6
PGR102G1361 Punica granatum HOM05D000522 ORTHO05D004380 1.0e-13 80.1 52 73.1
arahy.Tifrunner.gnm1.ann1.E6IMKI Arachis hypogaea HOM05D000522 ORTHO05D004380 1.3e-13 79.7 64 65.6
arahy.Tifrunner.gnm1.ann1.R702JB Arachis hypogaea HOM05D000522 ORTHO05D004380 1.3e-13 79.7 64 65.6
AUR62033399 Chenopodium quinoa HOM05D000522 ORTHO05D004380 1.3e-13 79.7 84 54.8
COL.COLO4_34881 Corchorus olitorius HOM05D000522 ORTHO05D004380 1.3e-13 79.7 52 75.0
Eucgr.C04134 Eucalyptus grandis HOM05D000522 ORTHO05D004380 1.3e-13 79.7 52 71.2
MBI04_g25412_MAGBIO Magnolia biondii HOM05D000522 ORTHO05D004380 1.3e-13 79.7 52 71.2
GSVIVG01015428001 Vitis vinifera HOM05D000522 ORTHO05D004380 1.3e-13 79.7 52 73.1
Cfa003289 Carpinus fangiana HOM05D000522 ORTHO05D004380 1.7e-13 79.3 64 62.5
AUR62011039 Chenopodium quinoa HOM05D000522 ORTHO05D004380 1.7e-13 79.3 61 60.7
Ca_17345_v3 Cicer arietinum L. HOM05D000522 ORTHO05D004380 1.7e-13 79.3 64 65.6
Zm00001eb385980 Zea mays HOM05D000522 ORTHO05D004380 1.7e-13 79.3 64 59.4
ClCG11G002610 Citrullus lanatus HOM05D000522 ORTHO05D004380 2.3e-13 79.0 64 64.1
Dinv41579 Davidia involucrata HOM05D000993 ORTHO05D004380 2.3e-13 79.0 76 56.6
Nitab4.5_0002705g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 2.3e-13 79.0 64 65.6
Nitab4.5_0008625g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 2.3e-13 79.0 64 65.6
Peaxi162Scf00560g00617 Petunia axillaris HOM05D000522 ORTHO05D004380 2.3e-13 79.0 76 56.6
Potri.006G155700 Populus trichocarpa HOM05D000522 ORTHO05D004380 2.3e-13 79.0 64 67.2
Potri.006G156350 Populus trichocarpa HOM05D000522 ORTHO05D004380 2.3e-13 79.0 64 67.2
Sed0002571 Sechium edule HOM05D000522 ORTHO05D004380 2.3e-13 79.0 52 73.1
Solyc05g018410.3 Solanum lycopersicum HOM05D000522 ORTHO05D004380 2.3e-13 79.0 64 65.6
TPR.G21700 Trifolium pratense HOM05D000522 ORTHO05D004380 2.3e-13 79.0 64 64.1
Glyma.05G232600 Glycine max HOM05D000522 ORTHO05D004380 2.9e-13 78.6 64 64.1
Lj4g0021382 Lotus japonicus HOM05D000522 ORTHO05D004380 2.9e-13 78.6 64 65.6
CSS0032661 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 3.8e-13 78.2 76 55.3
Sabra06G0123500 Salix brachista HOM05D000522 ORTHO05D004380 3.8e-13 78.2 52 75.0
EL10Ac8g18536 Beta vulgaris HOM05D000522 ORTHO05D004380 5.0e-13 77.8 52 71.2
MELO3C004545.2 Cucumis melo HOM05D000522 ORTHO05D004380 5.0e-13 77.8 52 73.1
Migut.K00465 Erythranthe guttata HOM05D000522 ORTHO05D004380 5.0e-13 77.8 64 65.6
Medtr8g103840 Medicago truncatula HOM05D000522 ORTHO05D004380 5.0e-13 77.8 64 62.5
Os06g0594100 Oryza sativa ssp. japonica HOM05D000522 ORTHO05D004380 5.0e-13 77.8 64 59.4
PSO210G0429 Papaver somniferum HOM05D000522 ORTHO05D004380 5.0e-13 77.8 52 69.2
SalBow1G3152 Salvia bowleyana HOM05D000522 ORTHO05D004380 5.0e-13 77.8 64 65.6
Psat7g014120 Pisum sativum HOM05D000522 ORTHO05D004380 6.5e-13 77.4 52 71.2
Sopen07g011860 Solanum pennellii HOM05D000522 ORTHO05D004380 6.5e-13 77.4 64 62.5
HanXRQChr10g0317741 Helianthus annuus HOM05D000522 ORTHO05D004380 8.6e-13 77.0 76 56.6
Rhsim03G0244700 Rhododendron simsii HOM05D000522 ORTHO05D004380 8.6e-13 77.0 64 60.9
CAN.G300.3 Capsicum annuum HOM05D000522 ORTHO05D004380 1.1e-12 76.6 64 64.1
CsaV3_2G002430 Cucumis sativus L. HOM05D000522 ORTHO05D004380 1.1e-12 76.6 52 71.2
Peaxi162Scf00552g00512 Petunia axillaris HOM05D000522 ORTHO05D004380 1.1e-12 76.6 64 64.1
CSS0022610 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 1.5e-12 76.3 64 60.9
Haze_25684 Corylus avellana HOM05D000522 ORTHO05D004380 1.5e-12 76.3 64 60.9
HanXRQChr05g0138321 Helianthus annuus HOM05D000522 ORTHO05D004380 1.5e-12 76.3 76 53.9
TWI63G0481 Tripterygium wilfordii HOM05D000522 ORTHO05D004380 1.5e-12 76.3 64 64.1
AUR62033413 Chenopodium quinoa HOM05D000522 ORTHO05D004380 1.9e-12 75.9 52 69.2
ECA236G2754 Erigeron canadensis HOM05D000522 ORTHO05D004380 1.9e-12 75.9 76 53.9
Lj7A644G12 Lonicera japonica HOM05D000522 ORTHO05D004380 1.9e-12 75.9 64 62.5
Actinidia07420 Actinidia chinensis HOM05D000522 ORTHO05D004380 2.5e-12 75.5 64 57.8
Ah.09g227710 Amaranthus hybridus HOM05D000522 ORTHO05D004380 2.5e-12 75.5 52 69.2
ECA234G1779 Erigeron canadensis HOM05D000522 ORTHO05D004380 2.5e-12 75.5 76 55.3
Hund09185 Selenicereus undatus HOM05D000522 ORTHO05D004380 2.5e-12 75.5 52 69.2
Cc06_g09360 Coffea canephora HOM05D000522 ORTHO05D004380 3.2e-12 75.1 64 64.1
TAR383G0974 Trochodendron aralioides HOM05D000522 ORTHO05D004380 3.2e-12 75.1 52 71.2
Aqoxy7G03774 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 4.2e-12 74.7 64 59.4
MSTRG.26353 Avicennia marina HOM05D000522 ORTHO05D004380 5.5e-12 74.3 64 60.9
AUR62011027 Chenopodium quinoa HOM05D000522 ORTHO05D004380 5.5e-12 74.3 64 62.5
HPP92_006445 Vanilla planifolia HOM05D000522 ORTHO05D004380 7.2e-12 73.9 52 67.3
CiPaw.04G167000 Carya illinoinensis HOM05D000522 ORTHO05D004380 9.5e-12 73.6 52 65.4
Lsat_1_v5_gn_8_94761 Lactuca sativa HOM05D000522 ORTHO05D004380 9.5e-12 73.6 76 51.3
Pp3c14_25790 Physcomitrium patens HOM05D000522 ORTHO05D004380 1.2e-11 73.2 64 56.2
Pp3c2_2910 Physcomitrium patens HOM05D000522 ORTHO05D004380 1.6e-11 72.8 64 57.8
ATR0037G022 Amborella trichopoda HOM05D000522 ORTHO05D004380 2.1e-11 72.4 52 63.5
HanXRQChr13g0424731 Helianthus annuus HOM05D000522 ORTHO05D004380 2.8e-11 72.0 67 58.2
Hund26120 Selenicereus undatus HOM05D000522 ORTHO05D004380 2.8e-11 72.0 52 65.4
unitig_46.g18395 Utricularia gibba HOM05D000522 ORTHO05D004380 2.8e-11 72.0 64 59.4
Lsat_1_v5_gn_5_100220 Lactuca sativa HOM05D000522 ORTHO05D004380 6.1e-11 70.9 76 52.6
Oeu055871.1 Olea europaea HOM05D000522 ORTHO05D004380 1.4e-10 69.7 77 53.2
SMO147G0048 Selaginella moellendorffii HOM05D000522 ORTHO05D004380 1.8e-10 69.3 64 54.7
Mapoly0126s0026 Marchantia polymorpha HOM05D000522 ORTHO05D004380 3.0e-10 68.6 64 56.2
SGA_v2.0_scaffold183G39892 Striga asiatica HOM05D000522 ORTHO05D004380 4.0e-10 68.2 79 53.2
vmacro06199 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 7.5e-09 63.9 88 44.3
AagrBONN_evm.TU.Sc2ySwM_340.302 Anthoceros agrestis HOM05D000522 ORTHO05D004380 1.3e-08 63.2 52 53.8
vmacro06198 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 1.7e-08 62.8 71 50.7
Oeu058085.3 Olea europaea HOM05D000522 ORTHO05D004380 4.9e-08 61.2 115 38.3
A01p12550 Brassica napus HOM05D000522 ORTHO05D004380 8.3e-08 60.5 43 72.1
A03p21310 Brassica napus HOM05D000522 ORTHO05D004380 8.3e-08 60.5 43 72.1
BraA03t11366Z Brassica rapa HOM05D000522 ORTHO05D004380 8.3e-08 60.5 43 72.1
BolC9t53289H Brassica oleracea HOM05D000522 ORTHO05D004380 1.1e-07 60.1 41 75.6
Lj7C643G7 Lonicera japonica HOM05D000522 ORTHO05D004380 1.8e-07 59.3 39 71.8
AUR62033410 Chenopodium quinoa HOM05D000522 ORTHO05D004380 3.1e-07 58.5 55 54.5


User provided reference genes

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