Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p08250 Brassica napus HOM05D039156 ORTHO05D024576 1.3e-45 186.0 93 100.0
BolC8t47677H Brassica oleracea HOM05D039156 ORTHO05D024576 3.6e-32 141.4 75 94.7
BraA08t32709Z Brassica rapa HOM05D039156 ORTHO05D024576 1.1e-28 129.8 78 87.2
A08p06990 Brassica napus HOM05D000522 ORTHO05D024576 9.2e-28 126.7 94 73.4
AT4G13360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 6.4e-13 77.4 87 54.0
AL9U10300 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 7.1e-12 73.9 86 52.3
BcaC02g09431 Brassica carinata HOM05D000522 ORTHO05D004380 1.2e-11 73.2 87 51.7
C04p42550 Brassica napus HOM05D000522 ORTHO05D004380 1.2e-11 73.2 87 51.7
BolC4t25830H Brassica oleracea HOM05D000522 ORTHO05D004380 1.2e-11 73.2 87 51.7
BraA04t16571Z Brassica rapa HOM05D000522 ORTHO05D004380 1.2e-11 73.2 87 51.7
Sp7g10940 Schrenkiella parvula HOM05D000522 ORTHO05D004380 1.2e-11 73.2 87 51.7
Aa31LG9G4380 Aethionema arabicum HOM05D000522 ORTHO05D004380 2.1e-11 72.4 87 49.4
A04p08740 Brassica napus HOM05D000522 ORTHO05D004380 4.6e-11 71.2 87 50.6
Carub.0007s2921 Capsella rubella HOM05D000522 ORTHO05D004380 4.6e-11 71.2 95 48.4
Thhalv10025298m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 4.6e-11 71.2 86 51.2
CARHR218930 Cardamine hirsuta HOM05D000522 ORTHO05D004380 7.8e-11 70.5 87 50.6
BcaB03g16093 Brassica carinata HOM05D000522 ORTHO05D004380 1.7e-10 69.3 86 51.2
Manes.03G069100 Manihot esculenta HOM05D000522 ORTHO05D004380 1.7e-10 69.3 90 50.0
ECA234G1779 Erigeron canadensis HOM05D000522 ORTHO05D004380 2.3e-10 68.9 94 47.9
Lj7A644G12 Lonicera japonica HOM05D000522 ORTHO05D004380 2.3e-10 68.9 93 48.4
Lj7C643G7 Lonicera japonica HOM05D000522 ORTHO05D004380 2.3e-10 68.9 93 48.4
FAN28G2217 Fragaria x ananassa HOM05D000522 ORTHO05D004380 3.0e-10 68.6 80 50.0
Prupe.7G227300 Prunus persica HOM05D000522 ORTHO05D004380 3.0e-10 68.6 84 46.4
Potri.006G155700 Populus trichocarpa HOM05D000522 ORTHO05D004380 3.9e-10 68.2 87 48.3
Potri.006G156350 Populus trichocarpa HOM05D000522 ORTHO05D004380 3.9e-10 68.2 87 48.3
FvH4_1g05350 Fragaria vesca HOM05D000522 ORTHO05D004380 5.1e-10 67.8 80 50.0
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 5.1e-10 67.8 80 50.0
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 5.1e-10 67.8 80 50.0
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 5.1e-10 67.8 80 50.0
RcHm_v2.0_Chr2g0091031 Rosa chinensis HOM05D000522 ORTHO05D004380 6.6e-10 67.4 91 47.3
BcaC01g03316 Brassica carinata HOM05D000522 ORTHO05D004380 8.7e-10 67.0 87 46.0
C03p53740 Brassica napus HOM05D000522 ORTHO05D004380 8.7e-10 67.0 87 46.0
BolC3t17634H Brassica oleracea HOM05D000522 ORTHO05D004380 8.7e-10 67.0 87 46.0
MD02G1056500 Malus domestica HOM05D000522 ORTHO05D004380 1.1e-09 66.6 88 46.6
Nitab4.5_0008529g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 1.1e-09 66.6 92 42.4
BraA03t13500Z Brassica rapa HOM05D000522 ORTHO05D004380 1.5e-09 66.2 87 44.8
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.5e-09 66.2 80 48.8
MD15G1189500 Malus domestica HOM05D000522 ORTHO05D004380 1.5e-09 66.2 80 47.5
HanXRQChr10g0317641 Helianthus annuus HOM05D000522 ORTHO05D004380 1.9e-09 65.9 93 47.3
HanXRQChr10g0317691 Helianthus annuus HOM05D000522 ORTHO05D024576 1.9e-09 65.9 93 47.3
HanXRQChr10g0317741 Helianthus annuus HOM05D000522 ORTHO05D004380 1.9e-09 65.9 93 47.3
HanXRQChr13g0424731 Helianthus annuus HOM05D000522 ORTHO05D004380 1.9e-09 65.9 93 47.3
Lsat_1_v5_gn_5_100220 Lactuca sativa HOM05D000522 ORTHO05D004380 2.5e-09 65.5 93 45.2
CAN.G32.1 Capsicum annuum HOM05D000522 ORTHO05D004380 3.3e-09 65.1 86 45.3
Atru.chr7.1299 Acer truncatum HOM05D000522 ORTHO05D004380 4.3e-09 64.7 90 46.7
AL3G39830 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 4.3e-09 64.7 87 46.0
A03p43630 Brassica napus HOM05D000522 ORTHO05D004380 4.3e-09 64.7 84 45.2
Nitab4.5_0002363g0030 Nicotiana tabacum HOM05D000522 ORTHO05D004380 4.3e-09 64.7 94 43.6
Cfa003289 Carpinus fangiana HOM05D000522 ORTHO05D004380 5.6e-09 64.3 87 48.3
Cc06_g09360 Coffea canephora HOM05D000522 ORTHO05D004380 5.6e-09 64.3 86 47.7
Haze_25684 Corylus avellana HOM05D000522 ORTHO05D004380 5.6e-09 64.3 87 48.3
Duzib187G0776 Durio zibethinus HOM05D000522 ORTHO05D004380 5.6e-09 64.3 60 55.0
Sp3g22170 Schrenkiella parvula HOM05D000522 ORTHO05D004380 7.3e-09 63.9 84 44.0
Thecc.09G114500 Theobroma cacao HOM05D000522 ORTHO05D004380 7.3e-09 63.9 95 43.2
Ciclev10008327m.g Citrus clementina HOM05D000522 ORTHO05D004380 9.6e-09 63.5 88 48.9
CANSAT56G3220 Cannabis sativa HOM05D000522 ORTHO05D004380 1.3e-08 63.2 87 46.0
CANSAT56G3667 Cannabis sativa HOM05D000522 ORTHO05D004380 1.3e-08 63.2 87 46.0
COL.COLO4_34881 Corchorus olitorius HOM05D000522 ORTHO05D004380 1.3e-08 63.2 91 45.1
DCAR_012089 Daucus carota HOM05D000522 ORTHO05D004380 1.3e-08 63.2 92 43.5
Eucgr.C01076 Eucalyptus grandis HOM05D000522 ORTHO05D004380 1.3e-08 63.2 87 46.0
QL02p086017 Quercus lobata HOM05D000522 ORTHO05D004380 1.3e-08 63.2 87 47.1
Sabra06G0123500 Salix brachista HOM05D000522 ORTHO05D004380 1.3e-08 63.2 86 46.5
Aa31LG8G11100 Aethionema arabicum HOM05D000522 ORTHO05D004380 1.6e-08 62.8 41 70.7
Carub.0003s2470 Capsella rubella HOM05D000522 ORTHO05D004380 2.1e-08 62.4 84 44.0
CsaV3_2G002430 Cucumis sativus L. HOM05D000522 ORTHO05D004380 2.1e-08 62.4 91 42.9
ECA236G2754 Erigeron canadensis HOM05D000522 ORTHO05D004380 2.1e-08 62.4 90 41.1
TWI63G0481 Tripterygium wilfordii HOM05D000522 ORTHO05D004380 2.1e-08 62.4 41 68.3
BcaB03g14587 Brassica carinata HOM05D000522 ORTHO05D004380 2.8e-08 62.0 87 41.4
CiPaw.04G167000 Carya illinoinensis HOM05D000522 ORTHO05D004380 2.8e-08 62.0 91 45.1
Gohir.D13G202100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 2.8e-08 62.0 60 51.7
Gorai.013G231000 Gossypium raimondii HOM05D000522 ORTHO05D004380 2.8e-08 62.0 60 51.7
GSVIVG01015428001 Vitis vinifera HOM05D000522 ORTHO05D004380 2.8e-08 62.0 86 48.8
Actinidia20339 Actinidia chinensis HOM05D000522 ORTHO05D004380 3.6e-08 61.6 88 47.7
CARHR100460 Cardamine hirsuta HOM05D000522 ORTHO05D004380 3.6e-08 61.6 88 43.2
Lsat_1_v5_gn_8_94761 Lactuca sativa HOM05D000522 ORTHO05D004380 3.6e-08 61.6 93 41.9
Lalb_Chr05g0222651 Lupinus albus HOM05D000522 ORTHO05D004380 3.6e-08 61.6 87 42.5
Oeu058085.3 Olea europaea HOM05D000522 ORTHO05D004380 3.6e-08 61.6 90 45.6
CAN.G300.3 Capsicum annuum HOM05D000522 ORTHO05D004380 4.8e-08 61.2 60 53.3
Thhalv10002535m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 4.8e-08 61.2 41 68.3
Os06g0594100 Oryza sativa ssp. japonica HOM05D000522 ORTHO05D004380 4.8e-08 61.2 91 39.6
AT3G24360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 6.2e-08 60.8 84 41.7
AUR62033399 Chenopodium quinoa HOM05D000522 ORTHO05D004380 6.2e-08 60.8 90 45.6
MELO3C004545.2 Cucumis melo HOM05D000522 ORTHO05D004380 6.2e-08 60.8 87 44.8
PGR102G1361 Punica granatum HOM05D000522 ORTHO05D004380 6.2e-08 60.8 87 43.7
Peaxi162Scf00552g00512 Petunia axillaris HOM05D000522 ORTHO05D004380 8.1e-08 60.5 41 70.7
Phvul.002G314900 Phaseolus vulgaris HOM05D000522 ORTHO05D004380 8.1e-08 60.5 90 44.4
Rhsim03G0244700 Rhododendron simsii HOM05D000522 ORTHO05D004380 8.1e-08 60.5 60 53.3
Sed0002571 Sechium edule HOM05D000522 ORTHO05D004380 8.1e-08 60.5 90 45.6
CSS0032661 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 1.1e-07 60.1 90 45.6
Duzib150G0749 Durio zibethinus HOM05D000522 ORTHO05D004380 1.1e-07 60.1 91 41.8
Gohir.A13G196800 Gossypium hirsutum HOM05D000522 ORTHO05D004380 1.1e-07 60.1 60 50.0
Peaxi162Scf00560g00617 Petunia axillaris HOM05D000522 ORTHO05D004380 1.1e-07 60.1 81 44.4
arahy.Tifrunner.gnm1.ann1.E6IMKI Arachis hypogaea HOM05D000522 ORTHO05D004380 1.4e-07 59.7 87 44.8
arahy.Tifrunner.gnm1.ann1.R702JB Arachis hypogaea HOM05D000522 ORTHO05D004380 1.4e-07 59.7 87 44.8
CSS0022610 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 1.4e-07 59.7 40 72.5
Cpa.g.sc23.137 Carica papaya HOM05D000522 ORTHO05D004380 1.4e-07 59.7 41 65.9
Glyma.08G040000 Glycine max HOM05D000522 ORTHO05D004380 1.4e-07 59.7 92 40.2
unitig_46.g18395 Utricularia gibba HOM05D000522 ORTHO05D004380 1.4e-07 59.7 41 68.3
Solyc05g018417.1 Solanum lycopersicum HOM05D000522 ORTHO05D004380 1.8e-07 59.3 41 68.3
Sopen07g011860 Solanum pennellii HOM05D000522 ORTHO05D004380 1.8e-07 59.3 92 42.4
VMungo0251G1337 Vigna mungo HOM05D000522 ORTHO05D004380 1.8e-07 59.3 95 41.1
Actinidia07420 Actinidia chinensis HOM05D000522 ORTHO05D004380 2.4e-07 58.9 87 43.7
Dinv41579 Davidia involucrata HOM05D000993 ORTHO05D004380 2.4e-07 58.9 90 44.4
SGA_v2.0_scaffold183G39892 Striga asiatica HOM05D000522 ORTHO05D004380 2.4e-07 58.9 60 53.3
THA.LOC104808747 Tarenaya hassleriana HOM05D000522 ORTHO05D004380 2.4e-07 58.9 40 70.0
vmacro06199 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 2.4e-07 58.9 60 51.7
Zm00001eb385980 Zea mays HOM05D000522 ORTHO05D004380 2.4e-07 58.9 78 44.9
Hund09185 Selenicereus undatus HOM05D000522 ORTHO05D004380 3.1e-07 58.5 41 63.4
ClCG11G002610 Citrullus lanatus HOM05D000522 ORTHO05D004380 4.0e-07 58.2 85 44.7
Nn8g39261 Nelumbo nucifera HOM05D000522 ORTHO05D004380 4.0e-07 58.2 60 51.7
QL02p086054 Quercus lobata HOM05D000522 ORTHO05D004380 4.0e-07 58.2 94 41.5
AUR62011027 Chenopodium quinoa HOM05D000522 ORTHO05D004380 5.3e-07 57.8 90 43.3
AUR62011039 Chenopodium quinoa HOM05D000522 ORTHO05D004380 5.3e-07 57.8 92 41.3
AUR62033413 Chenopodium quinoa HOM05D000522 ORTHO05D004380 5.3e-07 57.8 88 44.3
Gohir.D07G004100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 6.9e-07 57.4 60 50.0
Gorai.001G003700 Gossypium raimondii HOM05D000522 ORTHO05D004380 6.9e-07 57.4 60 50.0
HanXRQChr05g0138321 Helianthus annuus HOM05D000522 ORTHO05D004380 6.9e-07 57.4 95 37.9
Lalb_Chr16g0387971 Lupinus albus HOM05D000522 ORTHO05D004380 6.9e-07 57.4 89 41.6
Sed0015283 Sechium edule HOM05D000522 ORTHO05D004380 6.9e-07 57.4 86 40.7
EL10Ac8g18536 Beta vulgaris HOM05D000522 ORTHO05D004380 9.0e-07 57.0 90 42.2
Ca_17345_v3 Cicer arietinum L. HOM05D000522 ORTHO05D004380 9.0e-07 57.0 41 65.9
Medtr8g103840 Medicago truncatula HOM05D000522 ORTHO05D004380 9.0e-07 57.0 85 44.7
Aqoxy7G01827 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 1.2e-06 56.6 81 40.7
Aqoxy7G03774 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 1.2e-06 56.6 78 43.6
MSTRG.26353 Avicennia marina HOM05D000522 ORTHO05D004380 1.2e-06 56.6 94 41.5
Gohir.A07G003600 Gossypium hirsutum HOM05D000522 ORTHO05D004380 1.2e-06 56.6 60 50.0
Lj4g0021382 Lotus japonicus HOM05D000522 ORTHO05D004380 1.2e-06 56.6 41 63.4
MBI04_g25412_MAGBIO Magnolia biondii HOM05D000522 ORTHO05D004380 1.2e-06 56.6 66 43.9
Nitab4.5_0002705g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 1.2e-06 56.6 95 41.1
Duzib168G0832 Durio zibethinus HOM05D000522 ORTHO05D004380 1.5e-06 56.2 67 46.3
Glyma.05G232600 Glycine max HOM05D000522 ORTHO05D004380 1.5e-06 56.2 41 63.4
Nitab4.5_0008625g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 1.5e-06 56.2 95 41.1
SalBow1G3152 Salvia bowleyana HOM05D000522 ORTHO05D004380 1.5e-06 56.2 96 39.6
CDE02G2108 Ceratophyllum demersum HOM05D000522 ORTHO05D004380 2.0e-06 55.8 78 42.3
TAR383G0974 Trochodendron aralioides HOM05D000522 ORTHO05D004380 2.0e-06 55.8 41 61.0
AUR62033410 Chenopodium quinoa HOM05D000522 ORTHO05D004380 2.6e-06 55.5 91 37.4
Psat7g012360 Pisum sativum HOM05D000522 ORTHO05D004380 3.4e-06 55.1 85 42.4
Hund26120 Selenicereus undatus HOM05D000522 ORTHO05D004380 3.4e-06 55.1 39 66.7
ATR0037G022 Amborella trichopoda HOM05D000522 ORTHO05D004380 4.4e-06 54.7 78 41.0
Migut.K00465 Erythranthe guttata HOM05D000522 ORTHO05D004380 4.4e-06 54.7 94 38.3
vmacro06197 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 4.4e-06 54.7 60 48.3
TPR.G21700 Trifolium pratense HOM05D000522 ORTHO05D004380 5.8e-06 54.3 39 61.5
HPP92_006445 Vanilla planifolia HOM05D000522 ORTHO05D004380 5.8e-06 54.3 81 35.8
Psat7g014120 Pisum sativum HOM05D000522 ORTHO05D004380 7.6e-06 53.9 39 64.1
PSO210G0429 Papaver somniferum HOM05D000522 ORTHO05D004380 9.9e-06 53.5 41 56.1


User provided reference genes

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