Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 9.9e-144 513.5 263 100.0
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 8.4e-143 510.4 263 99.6
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 9.0e-129 463.8 241 99.2
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 9.0e-129 463.8 241 99.2
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 7.6e-128 460.7 241 99.2
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.9e-119 432.2 242 93.8
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.8e-108 396.4 241 85.5
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.8e-108 396.4 241 85.5
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 6.7e-108 394.4 242 86.4
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 6.7e-108 394.4 242 86.4
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 3.3e-107 392.1 243 83.5
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 4.3e-107 391.7 241 85.5
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-106 390.2 242 86.0
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 3.6e-101 372.1 242 81.8
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.1e-97 360.5 242 79.8
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 3.4e-96 355.5 223 84.8
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.5e-91 340.1 260 70.4
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 9.4e-86 320.9 242 71.9
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.2e-85 320.5 244 72.5
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.5e-83 313.5 223 73.5
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 3.3e-83 312.4 185 85.4
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.8e-81 306.6 176 86.4
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 9.8e-75 284.3 229 63.8
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 2.2e-74 283.1 243 61.7
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 4.1e-73 278.9 233 62.7
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 4.1e-73 278.9 244 61.9
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 7.0e-73 278.1 241 61.8
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 7.0e-73 278.1 244 58.6
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.2e-72 277.3 247 59.1
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.6e-72 276.9 196 69.9
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.6e-72 276.9 209 66.0
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.7e-72 276.2 245 60.8
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.7e-72 276.2 247 61.1
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 3.5e-72 275.8 243 61.3
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 7.7e-72 274.6 241 61.4
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.3e-71 273.9 248 58.1
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.7e-71 273.5 183 71.6
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.3e-71 273.1 245 60.4
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.3e-71 273.1 241 59.3
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.9e-71 272.7 254 59.1
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.9e-71 272.7 227 63.0
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 3.8e-71 272.3 240 57.1
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 3.8e-71 272.3 237 59.9
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 3.8e-71 272.3 246 58.9
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.0e-71 271.9 201 67.2
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 5.0e-71 271.9 246 60.6
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.1e-70 270.8 241 58.9
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-70 270.4 244 59.0
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.5e-70 270.4 225 62.2
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.5e-70 269.6 239 60.3
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 3.2e-70 269.2 231 60.6
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 3.2e-70 269.2 242 56.2
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 4.2e-70 268.9 239 59.8
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 4.2e-70 268.9 226 61.1
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 5.5e-70 268.5 243 58.8
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 5.5e-70 268.5 243 58.8
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 5.5e-70 268.5 239 59.8
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.2e-70 268.1 239 60.3
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 9.5e-70 267.7 247 57.1
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.6e-69 266.9 240 59.2
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.6e-69 266.9 240 59.2
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.6e-69 266.9 186 68.8
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 2.1e-69 266.5 244 59.4
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 2.8e-69 266.2 190 67.4
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.8e-69 266.2 244 57.4
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.6e-69 265.8 240 60.0
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 3.6e-69 265.8 248 58.1
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 3.6e-69 265.8 193 69.4
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.6e-69 265.8 239 59.8
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 3.6e-69 265.8 243 58.4
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 4.7e-69 265.4 243 59.7
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.0e-69 264.6 239 59.0
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.0e-68 264.2 247 56.7
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.0e-68 264.2 179 70.9
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 1.8e-68 263.5 239 59.8
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.3e-68 263.1 239 60.7
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 5.2e-68 261.9 241 56.8
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.2e-68 261.9 178 71.9
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 6.8e-68 261.5 225 60.4
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 6.8e-68 261.5 241 56.0
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.2e-67 260.8 238 58.0
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 2.6e-67 259.6 207 60.4
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 7.5e-67 258.1 240 58.8
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 7.5e-67 258.1 193 67.9
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 9.8e-67 257.7 178 70.8
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 9.8e-67 257.7 251 57.4
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.3e-66 257.3 178 70.8
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.7e-66 256.9 178 70.2
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.7e-66 256.9 185 67.6
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 3.7e-66 255.8 176 71.0
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 8.3e-66 254.6 194 63.9
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.1e-65 254.2 245 55.5
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 3.1e-65 252.7 241 58.5
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 3.1e-65 252.7 243 57.6
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 4.1e-65 252.3 201 61.2
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 4.1e-65 252.3 244 56.1
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 5.4e-65 251.9 251 55.4
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 7.0e-65 251.5 226 56.2
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 9.2e-65 251.1 178 68.0
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 9.2e-65 251.1 241 54.8
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 2.7e-64 249.6 243 55.6
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.7e-64 249.6 261 51.3
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 4.5e-64 248.8 245 56.7
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.3e-63 247.3 193 61.7
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.3e-63 247.3 257 55.6
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.7e-63 246.9 220 60.5
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 3.8e-63 245.7 255 53.3
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 5.0e-63 245.4 185 62.7
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 5.0e-63 245.4 182 65.9
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 8.6e-63 244.6 151 78.8
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.5e-62 243.8 165 79.4
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.9e-62 243.4 244 55.7
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 5.6e-62 241.9 250 54.0
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 5.6e-62 241.9 241 53.1
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.6e-61 240.4 246 53.3
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 2.1e-61 240.0 183 65.0
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 4.7e-61 238.8 167 68.3
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 6.1e-61 238.4 163 71.2
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 6.1e-61 238.4 176 64.8
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 4.0e-60 235.7 230 55.7
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 6.8e-60 235.0 176 63.6
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 3.4e-59 232.6 175 64.0
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 9.8e-59 231.1 241 51.9
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 6.4e-58 228.4 231 55.0
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.1e-57 225.7 147 74.1
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 7.0e-57 224.9 231 54.1
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-56 223.8 163 65.6
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.6e-56 223.8 245 51.8
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.0e-56 223.4 230 56.1
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 2.7e-56 223.0 172 64.0
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 6.0e-56 221.9 187 57.8
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 6.0e-56 221.9 204 54.9
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.3e-55 219.9 221 53.4
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 2.3e-55 219.9 173 63.6
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 5.0e-55 218.8 208 53.4
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 1.5e-54 217.2 238 50.8
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 4.0e-52 209.1 188 54.8
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 4.4e-51 205.7 171 60.2
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.8e-51 204.5 164 64.0
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.4e-49 200.7 226 53.1
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.3e-46 189.5 132 66.7
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.7e-40 169.9 147 61.2
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 7.8e-40 168.3 112 70.5
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 2.3e-39 166.8 197 42.6
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 3.8e-34 149.4 110 62.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.9e-33 147.1 173 43.4
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 2.5e-30 136.7 150 50.7
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 9.6e-30 134.8 180 40.6
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 8.1e-29 131.7 151 43.7
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 4.4e-27 125.9 161 42.2
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.6e-24 115.9 76 71.1
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 2.2e-18 97.1 86 57.0
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 2.4e-17 93.6 154 35.1
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 2.5e-14 83.6 63 65.1
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 2.5e-14 83.6 87 44.8
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 3.3e-14 83.2 71 59.2
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 3.3e-14 83.2 71 59.2
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.4e-09 67.0 109 38.5
Aa31sc213G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 5.5e-09 65.9 54 70.4
BcaB06g26460 Brassica carinata HOM05D004405 ORTHO05D095050 3.9e-07 59.7 38 76.3


User provided reference genes

Program Settings