Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p05980 Brassica napus HOM05D006235 ORTHO05D003296 5.4e-114 414.5 225 100.0
BolC8t47409H Brassica oleracea HOM05D006235 ORTHO05D003296 1.6e-70 270.0 244 70.9
BcaC07g37196 Brassica carinata HOM05D006235 ORTHO05D003296 6.2e-70 268.1 244 70.5
A08p05440 Brassica napus HOM05D006235 ORTHO05D003296 1.9e-63 246.5 236 64.8
BraA08t32549Z Brassica rapa HOM05D006235 ORTHO05D003296 5.6e-63 245.0 236 64.8
BcaB04g17481 Brassica carinata HOM05D006235 ORTHO05D003296 1.7e-59 233.4 235 62.1
AL1G54110 Arabidopsis lyrata HOM05D006235 ORTHO05D003296 3.5e-57 225.7 245 57.1
AT1G47750 Arabidopsis thaliana HOM05D006235 ORTHO05D003296 3.0e-56 222.6 245 55.1
Thhalv10011736m.g Eutrema salsugineum HOM05D006235 ORTHO05D003296 4.3e-55 218.8 246 56.1
Carub.0001s3660 Capsella rubella HOM05D006235 ORTHO05D003296 8.1e-54 214.5 245 54.7
CARHR037350 Cardamine hirsuta HOM05D006235 ORTHO05D003296 4.5e-52 208.8 246 53.3
Sp1g34750 Schrenkiella parvula HOM05D006235 ORTHO05D003296 5.8e-52 208.4 245 55.9
SpUn0092_0030 Schrenkiella parvula HOM05D006235 ORTHO05D003296 5.8e-52 208.4 245 55.9
THA.LOC104816110 Tarenaya hassleriana HOM05D006235 ORTHO05D003296 2.4e-50 203.0 245 53.1
Aa31LG10G9710 Aethionema arabicum HOM05D006235 ORTHO05D003296 8.7e-48 194.5 245 51.4
Dinv36049 Davidia involucrata HOM05D006235 ORTHO05D003296 1.1e-45 187.6 257 47.9
Cpa.g.sc64.60 Carica papaya HOM05D006235 ORTHO05D003296 1.4e-45 187.2 236 49.2
CiPaw.15G074000 Carya illinoinensis HOM05D006235 ORTHO05D003296 3.1e-45 186.0 243 48.1
Gohir.A05G196101 Gossypium hirsutum HOM05D006235 ORTHO05D003296 4.0e-45 185.7 229 49.3
Sabra02G0104600 Salix brachista HOM05D000481 ORTHO05D003296 5.3e-45 185.3 252 46.4
Ciclev10002211m.g Citrus clementina HOM05D006235 ORTHO05D003296 6.9e-45 184.9 238 49.2
COL.COLO4_26358 Corchorus olitorius HOM05D006235 ORTHO05D003296 9.0e-45 184.5 236 46.2
CSS0007357 Camellia sinensis var. sinensis HOM05D006235 ORTHO05D003296 1.2e-44 184.1 233 48.9
CSS0035456 Camellia sinensis var. sinensis HOM05D006235 ORTHO05D003296 1.2e-44 184.1 233 48.9
QL01p055631 Quercus lobata HOM05D006235 ORTHO05D003296 1.5e-44 183.7 242 48.8
Gorai.009G204400 Gossypium raimondii HOM05D006235 ORTHO05D003296 2.6e-44 183.0 244 45.9
Migut.C00693 Erythranthe guttata HOM05D006235 ORTHO05D003296 3.4e-44 182.6 248 47.6
Solyc04g080000.1 Solanum lycopersicum HOM05D006235 ORTHO05D003296 3.4e-44 182.6 243 48.1
Sopen04g033590 Solanum pennellii HOM05D006235 ORTHO05D003296 3.4e-44 182.6 243 48.1
Oeu005368.1 Olea europaea HOM05D006235 ORTHO05D003296 7.6e-44 181.4 220 51.4
QL02p007721 Quercus lobata HOM05D006235 ORTHO05D003296 1.0e-43 181.0 242 47.9
Gohir.D05G199200 Gossypium hirsutum HOM05D006235 ORTHO05D003296 1.7e-43 180.3 236 45.8
Thecc.08G023000 Theobroma cacao HOM05D006235 ORTHO05D003296 2.2e-43 179.9 236 46.2
TWI56G0916 Tripterygium wilfordii HOM05D006235 ORTHO05D003296 2.2e-43 179.9 234 47.4
Nitab4.5_0003246g0120 Nicotiana tabacum HOM05D006235 ORTHO05D003296 3.8e-43 179.1 234 47.4
PGSC0003DMG400027850 Solanum tuberosum HOM05D006235 ORTHO05D003296 3.8e-43 179.1 243 47.7
Lj4P783T56 Lonicera japonica HOM05D006235 ORTHO05D003296 4.9e-43 178.7 232 49.1
BcaB02g11343 Brassica carinata HOM05D006235 ORTHO05D003296 6.5e-43 178.3 235 52.8
TWI36G1585 Tripterygium wilfordii HOM05D006235 ORTHO05D003296 6.5e-43 178.3 233 48.1
Atru.chr13.532 Acer truncatum HOM05D006235 ORTHO05D003296 1.1e-42 177.6 234 47.9
Cfa018433 Carpinus fangiana HOM05D006235 ORTHO05D003296 1.1e-42 177.6 234 47.0
CsaV3_2G028520 Cucumis sativus L. HOM05D006235 ORTHO05D003296 1.4e-42 177.2 245 47.8
Duzib093G1545 Durio zibethinus HOM05D006235 ORTHO05D003296 1.9e-42 176.8 236 45.3
Actinidia15304 Actinidia chinensis HOM05D006235 ORTHO05D003296 2.5e-42 176.4 237 48.9
Cc10_g03250 Coffea canephora HOM05D006235 ORTHO05D003296 2.5e-42 176.4 249 49.8
Manes.05G162800 Manihot esculenta HOM05D006235 ORTHO05D003296 4.2e-42 175.6 236 47.0
Nitab4.5_0000110g0280 Nicotiana tabacum HOM05D006235 ORTHO05D003296 4.2e-42 175.6 234 45.7
Peaxi162Scf00057g00614 Petunia axillaris HOM05D006235 ORTHO05D003296 9.3e-42 174.5 211 49.3
MD08G1032200 Malus domestica HOM05D006235 ORTHO05D003296 1.6e-41 173.7 244 43.9
Haze_17630 Corylus avellana HOM05D000100 ORTHO05D000052 2.7e-41 172.9 234 46.2
PGR031G3079 Punica granatum HOM05D006235 ORTHO05D003296 6.0e-41 171.8 241 46.1
CAN.G1126.24 Capsicum annuum HOM05D006235 ORTHO05D003296 7.9e-41 171.4 235 46.8
MELO3C010926.2 Cucumis melo HOM05D006235 ORTHO05D003296 1.3e-40 170.6 243 46.1
unitig_749.g13843 Utricularia gibba HOM05D006235 ORTHO05D003296 1.3e-40 170.6 243 45.3
VMungo0647G1754 Vigna mungo HOM05D006235 ORTHO05D003296 1.3e-40 170.6 238 47.1
FAN15G1700 Fragaria x ananassa HOM05D006235 ORTHO05D003296 1.8e-40 170.2 237 48.1
Potri.002G134000 Populus trichocarpa HOM05D006235 ORTHO05D003296 1.8e-40 170.2 252 44.0
CANSAT01G0611 Cannabis sativa HOM05D006235 ORTHO05D003296 2.3e-40 169.9 255 44.7
MD15G1028900 Malus domestica HOM05D006235 ORTHO05D003296 3.0e-40 169.5 236 45.3
Potri.014G042000 Populus trichocarpa HOM05D006235 ORTHO05D003296 3.0e-40 169.5 252 44.0
TAR381G0550 Trochodendron aralioides HOM05D006235 ORTHO05D003296 3.9e-40 169.1 240 46.2
A05p21390 Brassica napus HOM05D006235 ORTHO05D003296 5.1e-40 168.7 235 51.5
BraA05t21047Z Brassica rapa HOM05D006235 ORTHO05D003296 5.1e-40 168.7 235 51.5
FvH4_2g40140 Fragaria vesca HOM05D006235 ORTHO05D003296 5.1e-40 168.7 236 47.9
SGA_v2.0_scaffold48G18060 Striga asiatica HOM05D006235 ORTHO05D003296 5.1e-40 168.7 244 46.7
Ca_13341_v3 Cicer arietinum L. HOM05D006235 ORTHO05D003296 8.7e-40 167.9 234 45.7
HanXRQChr09g0268521 Helianthus annuus HOM05D006235 ORTHO05D003296 1.1e-39 167.5 247 46.2
BcaC05g27609 Brassica carinata HOM05D006235 ORTHO05D003296 1.5e-39 167.2 232 51.3
C05p35980 Brassica napus HOM05D006235 ORTHO05D003296 1.5e-39 167.2 232 51.3
Sed0027834 Sechium edule HOM05D006235 ORTHO05D003296 2.5e-39 166.4 243 46.9
Prupe.1G382600 Prunus persica HOM05D006235 ORTHO05D003296 7.4e-39 164.9 245 45.3
Aqoxy5G01690 Aquilegia oxysepala HOM05D006235 ORTHO05D003296 9.6e-39 164.5 245 46.1
Medtr1g021995 Medicago truncatula HOM05D006235 ORTHO05D003296 9.6e-39 164.5 248 45.2
Rhsim06G0035900 Rhododendron simsii HOM05D006235 ORTHO05D003296 9.6e-39 164.5 258 45.7
Sabra14G0030600 Salix brachista HOM05D006235 ORTHO05D003296 1.3e-38 164.1 249 42.6
arahy.Tifrunner.gnm1.ann1.6S3G4W Arachis hypogaea HOM05D006235 ORTHO05D003296 2.8e-38 162.9 260 43.1
arahy.Tifrunner.gnm1.ann1.M9U11V Arachis hypogaea HOM05D006235 ORTHO05D003296 2.8e-38 162.9 260 43.1
GSVIVG01009659001 Vitis vinifera HOM05D006235 ORTHO05D003296 3.7e-38 162.5 231 46.8
RcHm_v2.0_Chr6g0300611 Rosa chinensis HOM05D006235 ORTHO05D003296 6.3e-38 161.8 236 45.8
Ah.01g019680 Amaranthus hybridus HOM05D006235 ORTHO05D003296 3.1e-37 159.5 236 46.6
DCAR_019511 Daucus carota HOM05D006235 ORTHO05D003296 3.1e-37 159.5 247 44.1
Lj5g0012777 Lotus japonicus HOM05D006235 ORTHO05D003296 3.1e-37 159.5 249 43.4
BolC5t32323H Brassica oleracea HOM05D006235 ORTHO05D003296 6.9e-37 158.3 232 50.9
Phvul.001G016000 Phaseolus vulgaris HOM05D006235 ORTHO05D003296 6.9e-37 158.3 245 43.7
Lalb_Chr22g0355421 Lupinus albus HOM05D006235 ORTHO05D003296 1.5e-36 157.1 258 42.6
MBI16_g28233_MAGBIO Magnolia biondii HOM05D006235 ORTHO05D003296 1.5e-36 157.1 231 47.2
Nn5g29519 Nelumbo nucifera HOM05D006235 ORTHO05D003296 2.6e-36 156.4 243 44.0
PSO170G2537 Papaver somniferum HOM05D006235 ORTHO05D003296 2.6e-36 156.4 233 42.9
Glyma.14G076800 Glycine max HOM05D006235 ORTHO05D003296 4.5e-36 155.6 231 45.9
SalBow7G2606 Salvia bowleyana HOM05D006235 ORTHO05D003296 4.5e-36 155.6 263 42.6
PSO700G0260 Papaver somniferum HOM05D006235 ORTHO05D003296 2.2e-35 153.3 233 42.5
Glyma.17G249000 Glycine max HOM05D006235 ORTHO05D003296 2.9e-35 152.9 242 44.6
MSTRG.1294 Avicennia marina HOM05D006235 ORTHO05D003296 1.1e-34 151.0 250 44.4
Sed0009855 Sechium edule HOM05D006235 ORTHO05D003296 1.4e-34 150.6 243 43.6
Psat6g007000 Pisum sativum HOM05D006235 ORTHO05D003296 4.6e-33 145.6 236 43.6
ClCG08G015290 Citrullus lanatus HOM05D006235 ORTHO05D003296 6.1e-33 145.2 225 44.9
TPR.G15747 Trifolium pratense HOM05D006235 ORTHO05D003296 3.9e-32 142.5 236 40.7
ATR0787G130 Amborella trichopoda HOM05D006235 ORTHO05D003296 6.3e-30 135.2 235 38.7
Sc26g0003710 Simmondsia chinensis HOM05D006235 ORTHO05D003296 6.9e-29 131.7 231 41.6
Sc26g0003770 Simmondsia chinensis HOM05D006235 ORTHO05D003296 6.9e-29 131.7 231 41.6
CDE04G1780 Ceratophyllum demersum HOM05D006235 ORTHO05D003296 2.5e-26 123.2 223 39.9
HanXRQChr16g0508571 Helianthus annuus HOM05D006235 ORTHO05D003296 4.2e-26 122.5 196 42.3
Atru.chr13.531 Acer truncatum HOM05D006235 ORTHO05D003296 9.4e-26 121.3 223 39.0
HPP92_000097 Vanilla planifolia HOM05D006235 ORTHO05D003296 1.2e-25 120.9 250 38.8
SEGI_19994 Sequoiadendron giganteum HOM05D006235 ORTHO05D003296 1.0e-24 117.9 232 36.2
MSTRG.1292 Avicennia marina HOM05D006235 ORTHO05D003296 1.4e-24 117.5 243 39.5
Lj2P262T50 Lonicera japonica HOM05D006235 ORTHO05D003296 5.1e-24 115.5 119 51.3
Os03g0302000 Oryza sativa ssp. japonica HOM05D006235 ORTHO05D003296 1.1e-23 114.4 237 33.8
Pp3c2_11370 Physcomitrium patens HOM05D006235 ORTHO05D003296 4.8e-22 109.0 235 36.2
Zm00001eb014180 Zea mays HOM05D006235 ORTHO05D003296 4.8e-22 109.0 242 36.0
Atru.chr1.2828 Acer truncatum HOM05D006235 ORTHO05D003296 9.1e-21 104.8 241 34.9
SMO271G0112 Selaginella moellendorffii HOM05D006235 ORTHO05D003296 2.9e-19 99.8 254 34.3
AUR62011372 Chenopodium quinoa HOM05D006235 ORTHO05D003296 5.0e-19 99.0 177 39.5
Mapoly0002s0024 Marchantia polymorpha HOM05D006235 ORTHO05D003296 8.5e-19 98.2 243 31.7
CDE07G0964 Ceratophyllum demersum HOM05D006235 ORTHO05D003296 2.5e-18 96.7 233 33.5
AUR62016688 Chenopodium quinoa HOM05D006235 ORTHO05D003296 4.2e-18 95.9 177 39.0
Aa31LG8G12580 Aethionema arabicum HOM05D006235 ORTHO05D003296 5.5e-18 95.5 75 65.3
ECA232G0262 Erigeron canadensis HOM05D000853 ORTHO05D000723 2.7e-17 93.2 101 51.5
GSVIVG01009660001 Vitis vinifera HOM05D006235 ORTHO05D003296 1.4e-16 90.9 157 42.0
Os03g0301950 Oryza sativa ssp. japonica HOM05D006235 ORTHO05D003296 1.8e-16 90.5 254 31.9
Lsat_1_v5_gn_4_121700 Lactuca sativa HOM05D006235 ORTHO05D003296 1.1e-13 81.3 70 61.4
Atru.chr2.1709 Acer truncatum HOM05D006235 ORTHO05D003296 2.0e-12 77.0 76 53.9
Cre12.g540500 Chlamydomonas reinhardtii HOM05D006235 ORTHO05D003296 1.3e-11 74.3 237 30.8
Aqoxy517s001 Aquilegia oxysepala HOM05D006235 ORTHO05D003296 8.5e-11 71.6 168 36.9
MD02G1189800 Malus domestica HOM05D006235 ORTHO05D003296 1.2e-09 67.8 73 49.3
AagrBONN_evm.TU.Sc2ySwM_340.47 Anthoceros agrestis HOM05D006235 ORTHO05D003296 5.2e-08 62.4 238 26.5
Eucgr.E00144 Eucalyptus grandis HOM05D006235 ORTHO05D003296 1.1e-07 61.2 155 33.5


User provided reference genes

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