Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 2.4e-92 342.4 207 100.0
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 7.2e-65 251.1 298 50.7
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 1.7e-58 229.9 353 45.0
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 1.8e-55 219.9 325 45.2
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 4.0e-55 218.8 353 43.1
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 7.5e-54 214.5 353 46.2
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 1.7e-53 213.4 353 45.9
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 2.4e-52 209.5 348 42.0
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 7.0e-52 208.0 351 45.6
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 1.5e-49 200.3 351 42.7
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.2e-46 190.7 359 39.0
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 5.9e-43 178.3 305 38.4
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 1.2e-40 170.6 355 37.5
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 1.4e-39 167.2 350 39.7
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 1.4e-39 167.2 353 33.1
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 2.3e-39 166.4 301 37.2
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 3.0e-39 166.0 350 39.7
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 3.0e-39 166.0 350 39.7
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 5.2e-39 165.2 349 41.5
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 6.8e-39 164.9 350 39.4
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 6.8e-39 164.9 352 39.2
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 8.9e-39 164.5 310 34.8
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 1.2e-38 164.1 313 42.8
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 2.6e-38 162.9 348 38.5
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 3.4e-38 162.5 328 33.8
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 5.8e-38 161.8 349 38.7
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 5.8e-38 161.8 352 38.6
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 7.5e-38 161.4 352 38.6
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 9.8e-38 161.0 352 38.6
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 1.3e-37 160.6 352 36.9
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 2.9e-37 159.5 341 38.4
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 6.4e-37 158.3 342 32.7
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 1.1e-36 157.5 347 38.9
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 1.9e-36 156.8 351 35.9
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 2.4e-36 156.4 351 37.0
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 3.2e-36 156.0 341 38.7
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 4.1e-36 155.6 347 38.9
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 5.4e-36 155.2 348 35.6
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 7.0e-36 154.8 346 38.7
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 1.6e-35 153.7 344 36.6
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 2.0e-35 153.3 341 38.4
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 2.0e-35 153.3 347 34.0
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 3.5e-35 152.5 357 33.9
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 4.6e-35 152.1 346 37.9
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 4.6e-35 152.1 343 32.1
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 7.8e-35 151.4 341 31.4
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 7.8e-35 151.4 352 31.5
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 1.0e-34 151.0 297 38.4
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.3e-34 150.6 348 37.4
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 1.7e-34 150.2 344 38.4
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 2.3e-34 149.8 342 37.4
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 2.3e-34 149.8 349 36.4
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 3.0e-34 149.4 347 38.3
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 3.0e-34 149.4 343 35.9
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 3.9e-34 149.1 348 36.5
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 3.9e-34 149.1 348 33.6
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 3.9e-34 149.1 350 34.3
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 5.0e-34 148.7 349 36.7
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 5.0e-34 148.7 337 37.7
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 5.0e-34 148.7 348 37.4
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 5.0e-34 148.7 346 37.6
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 6.6e-34 148.3 350 32.9
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 6.6e-34 148.3 350 38.0
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 6.6e-34 148.3 382 34.0
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 6.6e-34 148.3 340 38.2
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 8.6e-34 147.9 348 36.5
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 8.6e-34 147.9 348 37.1
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 8.6e-34 147.9 350 36.0
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 8.6e-34 147.9 347 33.4
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 8.6e-34 147.9 343 35.6
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.1e-33 147.5 342 38.0
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 1.1e-33 147.5 344 37.8
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 1.1e-33 147.5 363 30.6
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 1.5e-33 147.1 343 37.0
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 2.5e-33 146.4 346 33.5
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 3.3e-33 146.0 343 38.5
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 3.3e-33 146.0 340 37.6
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 4.3e-33 145.6 339 37.8
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 4.3e-33 145.6 343 36.2
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 5.6e-33 145.2 344 38.1
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 7.3e-33 144.8 347 36.9
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 9.5e-33 144.4 346 37.0
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 1.2e-32 144.1 347 37.2
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 1.6e-32 143.7 345 35.9
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 2.1e-32 143.3 349 34.4
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 2.1e-32 143.3 344 36.3
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 4.7e-32 142.1 329 35.6
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 1.4e-31 140.6 343 37.0
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 1.8e-31 140.2 354 35.9
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 1.8e-31 140.2 354 35.9
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 2.3e-31 139.8 346 32.7
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 2.3e-31 139.8 350 33.7
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 8.9e-31 137.9 337 35.0
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 8.9e-31 137.9 349 34.1
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 1.2e-30 137.5 346 32.9
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 2.0e-30 136.7 351 29.9
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 3.7e-29 132.5 110 65.5
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 6.4e-29 131.7 350 33.4
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 1.1e-28 131.0 338 28.7
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 1.1e-28 131.0 345 38.0
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 1.4e-28 130.6 355 34.4
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 4.1e-28 129.0 349 29.5
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 2.1e-27 126.7 327 36.7
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 2.7e-27 126.3 326 35.9
CARHR262780 Cardamine hirsuta HOM05D004768 ORTHO05D005812 4.6e-27 125.6 89 69.7
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 1.3e-26 124.0 209 38.3
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 8.6e-26 121.3 348 34.5
CARHR114770 Cardamine hirsuta HOM05D004768 ORTHO05D005812 1.5e-25 120.6 74 78.4
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 1.9e-25 120.2 97 61.9
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 3.6e-24 115.9 260 35.8
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.8e-23 113.6 315 35.6
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 5.2e-23 112.1 352 33.2
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 4.9e-21 105.5 343 27.4
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 2.4e-20 103.2 114 46.5
DCAR_009162 Daucus carota HOM05D004768 ORTHO05D005812 3.2e-20 102.8 94 55.3
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 4.1e-20 102.4 114 46.5
BcaC07g37166 Brassica carinata HOM05D004768 ORTHO05D005812 5.4e-20 102.1 274 38.3
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 2.7e-19 99.8 115 46.1
BcaC01g04899 Brassica carinata HOM05D004768 ORTHO05D005812 3.5e-19 99.4 53 90.6
DCAR_009163 Daucus carota HOM05D004768 ORTHO05D005812 6.0e-19 98.6 110 46.4
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 7.8e-19 98.2 141 44.0
Zm00001eb304430 Zea mays HOM05D004768 ORTHO05D005812 7.8e-19 98.2 78 59.0
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 3.9e-18 95.9 113 45.1
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 5.1e-18 95.5 107 46.7
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 8.6e-18 94.7 114 44.7
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 1.1e-17 94.4 106 48.1
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 3.3e-17 92.8 345 24.3
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 4.3e-17 92.4 339 31.9
BolC3t15591H Brassica oleracea HOM05D000416 ORTHO05D000322 1.6e-16 90.5 49 87.8
Potri.001G221150 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.6e-16 90.5 71 59.2
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 1.6e-16 90.5 113 43.4
TAR636G3610 Trochodendron aralioides HOM05D004768 ORTHO05D005812 3.4e-14 82.8 108 44.4
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 5.8e-14 82.0 82 51.2
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 9.9e-14 81.3 93 45.2
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 2.2e-13 80.1 80 53.8
AagrBONN_evm.TU.Sc2ySwM_344.3396 Anthoceros agrestis HOM05D004768 ORTHO05D005812 2.9e-13 79.7 147 32.7
Nn2g14155 Nelumbo nucifera HOM05D004768 ORTHO05D005812 2.9e-13 79.7 47 78.7
Solyc09g009410.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 5.4e-12 75.5 68 51.5
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 1.6e-11 73.9 93 40.9
Sopen09g004150 Solanum pennellii HOM05D004768 ORTHO05D005812 2.1e-11 73.6 68 50.0
Aa31LG7G14190 Aethionema arabicum HOM05D004768 ORTHO05D005812 3.5e-11 72.8 93 47.3
SalBow1G3573 Salvia bowleyana HOM05D004768 ORTHO05D005812 3.5e-11 72.8 71 50.7
SalBow1G7826 Salvia bowleyana HOM05D004768 ORTHO05D005812 1.5e-09 67.4 233 27.9
DCAR_020750 Daucus carota HOM05D004768 ORTHO05D005812 3.3e-09 66.2 290 23.4
arahy.Tifrunner.gnm1.ann1.14B96B Arachis hypogaea HOM05D004768 ORTHO05D005812 1.8e-07 60.5 44 61.4
SHI23990 Sapria himalayana HOM05D000002 ORTHO05D000001 9.0e-07 58.2 52 57.7


User provided reference genes

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