Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 1.5e-156 556.2 301 100.0
BcaC04g19063 Brassica carinata HOM05D000496 ORTHO05D000411 8.0e-57 224.9 171 76.0
BcaB03g13495 Brassica carinata HOM05D000496 ORTHO05D000411 7.5e-47 191.8 183 61.7
BcaB07g33002 Brassica carinata HOM05D000496 ORTHO05D024163 1.9e-45 187.2 195 61.5
BcaB04g17809 Brassica carinata HOM05D000496 ORTHO05D000411 1.7e-38 164.1 197 53.3
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 6.6e-35 152.1 76 98.7
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 6.6e-35 152.1 76 98.7
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 6.6e-35 152.1 76 98.7
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 2.5e-34 150.2 76 97.4
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 2.5e-34 150.2 76 97.4
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 2.5e-34 150.2 76 97.4
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 2.5e-34 150.2 76 97.4
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 3.3e-34 149.8 76 97.4
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 5.6e-34 149.1 76 96.1
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 9.6e-34 148.3 76 96.1
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.2e-33 147.9 76 96.1
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-33 147.9 76 96.1
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 1.6e-33 147.5 76 94.7
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 1.6e-33 147.5 76 94.7
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 1.6e-33 147.5 76 94.7
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 4.7e-33 146.0 76 94.7
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 4.7e-33 146.0 76 94.7
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 3.1e-32 143.3 76 92.1
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 9.9e-31 138.3 76 92.1
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.4e-29 134.4 79 88.6
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 7.8e-28 128.6 83 79.5
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.1e-26 124.8 76 84.2
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.5e-26 124.4 83 75.9
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 1.9e-26 124.0 77 81.8
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 3.3e-26 123.2 80 78.8
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 3.3e-26 123.2 80 78.8
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 4.3e-26 122.9 79 79.7
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 4.3e-26 122.9 77 80.5
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 9.6e-26 121.7 80 77.5
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 9.6e-26 121.7 80 78.8
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 9.6e-26 121.7 80 77.5
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 9.6e-26 121.7 80 77.5
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.3e-25 121.3 79 78.5
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-25 120.6 80 77.5
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-25 120.6 80 77.5
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 2.1e-25 120.6 80 77.5
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 2.1e-25 120.6 80 77.5
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 2.1e-25 120.6 80 77.5
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 3.6e-25 119.8 80 76.2
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.8e-24 117.5 79 77.2
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 6.9e-24 115.5 81 74.1
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.5e-23 114.4 81 72.8
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.5e-23 114.4 81 72.8
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 3.4e-23 113.2 80 73.8
BcaB03g15751 Brassica carinata HOM05D000496 ORTHO05D023995 2.9e-22 110.2 175 46.9
BcaC09g48062 Brassica carinata HOM05D000496 ORTHO05D000411 1.8e-19 100.9 194 40.2
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 3.9e-19 99.8 74 68.9
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 1.2e-15 88.2 72 66.7
BcaB05g23101 Brassica carinata HOM05D012785 ORTHO05D014887 5.8e-15 85.9 152 40.8
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 5.8e-15 85.9 71 59.2
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 5.8e-15 85.9 71 59.2
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 7.6e-15 85.5 71 59.2
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 7.6e-15 85.5 71 59.2
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 9.9e-15 85.1 73 58.9
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 9.9e-15 85.1 73 64.4
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 1.3e-14 84.7 72 62.5
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.3e-14 84.7 74 64.9
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 1.3e-14 84.7 71 60.6
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 3.8e-14 83.2 72 61.1
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 3.8e-14 83.2 72 61.1
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 3.8e-14 83.2 72 58.3
BcaC05g28148 Brassica carinata HOM05D000496 ORTHO05D000411 4.9e-14 82.8 202 36.1
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 4.9e-14 82.8 73 61.6
BcaB08g36546 Brassica carinata HOM05D000496 ORTHO05D000411 6.4e-14 82.4 152 41.4
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 6.4e-14 82.4 71 54.9
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 6.4e-14 82.4 72 56.9
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 8.4e-14 82.0 73 61.6
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 1.1e-13 81.6 72 62.5
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.1e-13 81.6 72 62.5
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 1.1e-13 81.6 74 58.1
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 1.4e-13 81.3 73 58.9
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 1.4e-13 81.3 75 57.3
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 1.4e-13 81.3 73 61.6
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 1.4e-13 81.3 72 58.3
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 1.4e-13 81.3 72 61.1
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 1.9e-13 80.9 72 56.9
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.9e-13 80.9 72 59.7
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 1.9e-13 80.9 72 59.7
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 2.5e-13 80.5 71 60.6
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.5e-13 80.5 71 59.2
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 2.5e-13 80.5 72 59.7
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 3.2e-13 80.1 72 59.7
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 4.2e-13 79.7 72 56.9
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 5.5e-13 79.3 72 56.9
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 5.5e-13 79.3 73 56.2
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 5.5e-13 79.3 72 55.6
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 5.5e-13 79.3 72 58.3
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 9.3e-13 78.6 69 60.9
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 9.3e-13 78.6 72 56.9
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 1.2e-12 78.2 73 53.4
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 1.6e-12 77.8 72 58.3
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.6e-12 77.8 72 58.3
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.6e-12 77.8 72 58.3
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.6e-12 77.8 71 59.2
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 2.1e-12 77.4 71 57.7
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 2.1e-12 77.4 72 58.3
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 2.1e-12 77.4 72 56.9
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 2.7e-12 77.0 72 56.9
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 2.7e-12 77.0 72 56.9
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 3.5e-12 76.6 79 53.2
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 3.5e-12 76.6 72 59.7
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 3.5e-12 76.6 71 54.9
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.5e-12 76.6 71 56.3
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 4.6e-12 76.3 72 58.3
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 4.6e-12 76.3 75 57.3
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 6.0e-12 75.9 69 58.0
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 6.0e-12 75.9 72 55.6
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 7.9e-12 75.5 72 56.9
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 7.9e-12 75.5 75 53.3
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 1.0e-11 75.1 74 56.8
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 1.3e-11 74.7 72 54.2
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 1.8e-11 74.3 71 56.3
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 3.0e-11 73.6 69 56.5
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 3.0e-11 73.6 69 55.1
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 5.1e-11 72.8 76 53.9
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 5.1e-11 72.8 69 50.7
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 8.7e-11 72.0 82 50.0
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 8.7e-11 72.0 72 54.2
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.5e-10 71.2 74 50.0
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 1.9e-10 70.9 77 51.9
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 2.5e-10 70.5 71 54.9
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 3.3e-10 70.1 69 53.6
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 3.3e-10 70.1 72 52.8
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 4.3e-10 69.7 72 52.8
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 5.6e-10 69.3 78 51.3
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 5.6e-10 69.3 69 53.6
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 5.6e-10 69.3 71 52.1
C02p40890 Brassica napus HOM05D039579 ORTHO05D024163 9.6e-10 68.6 77 58.4
BcaB04g20795 Brassica carinata HOM05D000496 ORTHO05D000411 1.6e-09 67.8 184 35.3
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 2.8e-09 67.0 89 40.4
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 2.8e-09 67.0 83 45.8
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.8e-09 67.0 69 52.2
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 3.7e-09 66.6 74 50.0
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 4.8e-09 66.2 70 50.0
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 6.2e-09 65.9 71 49.3
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 1.4e-08 64.7 71 50.7
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 3.1e-08 63.5 71 50.7
BolC2t10107H Brassica oleracea HOM05D039579 ORTHO05D024163 3.1e-08 63.5 48 72.9
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 4.0e-08 63.2 69 49.3
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 4.0e-08 63.2 71 50.7
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 9.0e-08 62.0 82 47.6
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 9.0e-08 62.0 69 50.7
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 9.0e-08 62.0 68 52.9
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 9.0e-08 62.0 71 45.1
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 1.2e-07 61.6 71 49.3
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.0e-06 58.5 71 42.3
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 3.8e-06 56.6 89 39.3
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 4.9e-06 56.2 69 42.0
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 4.9e-06 56.2 59 54.2
Sp6g05340 Schrenkiella parvula HOM05D011300 ORTHO05D014887 4.9e-06 56.2 173 34.7


User provided reference genes

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