Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 2.1e-55 218.8 111 100.0
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 1.5e-53 212.6 116 95.7
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 1.6e-47 192.6 131 79.4
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 8.4e-28 127.1 71 91.5
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.9e-27 125.9 71 90.1
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.9e-27 125.9 71 90.1
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.9e-27 125.9 71 90.1
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.2e-26 123.2 71 88.7
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.2e-26 123.2 71 88.7
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 1.3e-25 119.8 111 63.1
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 1.9e-24 115.9 71 80.3
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 4.3e-24 114.8 71 80.3
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 9.6e-24 113.6 71 77.5
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 9.6e-24 113.6 89 67.4
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.3e-23 113.2 71 76.1
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.1e-23 112.5 70 78.6
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 2.1e-23 112.5 71 76.1
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 2.1e-23 112.5 71 76.1
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 2.1e-23 112.5 89 65.2
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 2.8e-23 112.1 71 78.9
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 3.7e-23 111.7 71 78.9
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 4.8e-23 111.3 71 74.6
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 4.8e-23 111.3 71 74.6
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 4.8e-23 111.3 71 76.1
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 6.2e-23 110.9 71 74.6
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 1.4e-22 109.8 79 74.7
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 6.9e-22 107.5 70 71.4
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 3.4e-21 105.1 70 71.4
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.4e-21 105.1 70 71.4
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.4e-21 105.1 70 71.4
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.6e-21 104.0 70 70.0
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 7.6e-21 104.0 70 67.1
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.0e-20 103.6 72 66.7
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 1.0e-20 103.6 70 68.6
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 1.7e-20 102.8 70 65.7
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 1.7e-20 102.8 70 70.0
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 2.2e-20 102.4 70 64.3
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 2.2e-20 102.4 70 68.6
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 2.2e-20 102.4 70 67.1
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 2.2e-20 102.4 70 67.1
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 2.9e-20 102.1 70 68.6
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 2.9e-20 102.1 70 67.1
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.8e-20 101.7 70 68.6
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 3.8e-20 101.7 70 64.3
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 3.8e-20 101.7 70 64.3
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 4.9e-20 101.3 64 75.0
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 4.9e-20 101.3 70 67.1
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 4.9e-20 101.3 70 68.6
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 6.5e-20 100.9 70 70.0
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 6.5e-20 100.9 70 68.6
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 8.4e-20 100.5 70 67.1
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 8.4e-20 100.5 70 68.6
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 8.4e-20 100.5 71 70.4
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 1.1e-19 100.1 72 65.3
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 1.1e-19 100.1 70 65.7
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 1.1e-19 100.1 70 67.1
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.4e-19 99.8 70 65.7
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.9e-19 99.4 70 65.7
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.9e-19 99.4 70 65.7
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 2.5e-19 99.0 70 62.9
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 3.2e-19 98.6 70 67.1
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.2e-19 98.6 73 64.4
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.2e-19 98.6 73 64.4
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 3.2e-19 98.6 70 67.1
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 3.2e-19 98.6 70 62.9
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 3.2e-19 98.6 70 65.7
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 3.2e-19 98.6 89 57.3
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 3.2e-19 98.6 70 67.1
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 4.2e-19 98.2 70 64.3
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 4.2e-19 98.2 70 64.3
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 4.2e-19 98.2 70 64.3
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 4.2e-19 98.2 70 64.3
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 5.5e-19 97.8 70 62.9
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 5.5e-19 97.8 70 65.7
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 9.3e-19 97.1 70 62.9
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 9.3e-19 97.1 70 62.9
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 1.2e-18 96.7 70 60.0
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.2e-18 96.7 72 61.1
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 1.2e-18 96.7 70 62.9
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.2e-18 96.7 70 64.3
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.6e-18 96.3 70 62.9
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 1.6e-18 96.3 70 64.3
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 2.1e-18 95.9 70 62.9
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 2.7e-18 95.5 70 64.3
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 3.5e-18 95.1 72 58.3
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 4.6e-18 94.7 70 65.7
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 6.0e-18 94.4 70 62.9
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 6.0e-18 94.4 70 61.4
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 7.9e-18 94.0 70 61.4
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 7.9e-18 94.0 70 61.4
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 7.9e-18 94.0 70 62.9
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.0e-17 93.6 70 62.9
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 1.0e-17 93.6 70 64.3
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.0e-17 93.6 70 61.4
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 1.3e-17 93.2 70 61.4
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.3e-17 93.2 70 61.4
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 1.8e-17 92.8 72 62.5
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.8e-17 92.8 70 61.4
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 1.8e-17 92.8 70 62.9
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 2.3e-17 92.4 70 60.0
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 2.3e-17 92.4 70 62.9
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 5.1e-17 91.3 70 62.9
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 5.1e-17 91.3 70 62.9
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 6.7e-17 90.9 70 60.0
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.3e-16 88.2 72 59.7
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 5.7e-16 87.8 70 62.9
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 7.4e-16 87.4 72 62.5
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 9.7e-16 87.0 70 58.6
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 9.7e-16 87.0 70 58.6
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 1.3e-15 86.7 70 60.0
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 1.3e-15 86.7 73 56.2
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 3.7e-15 85.1 70 60.0
BcaC04g19635 Brassica carinata HOM05D023231 ORTHO05D005058 8.2e-15 84.0 85 55.3
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 8.2e-15 84.0 73 53.4
BcaC04g21293 Brassica carinata HOM05D023231 ORTHO05D090933 1.8e-14 82.8 42 95.2
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 1.8e-14 82.8 70 58.6
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 1.8e-14 82.8 70 58.6
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 3.1e-14 82.0 71 59.2
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 4.1e-14 81.6 70 54.3
C09p33470 Brassica napus HOM05D000209 ORTHO05D000129 6.9e-14 80.9 67 68.7
BolC9t56183H Brassica oleracea HOM05D000209 ORTHO05D000129 6.9e-14 80.9 67 68.7
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 9.0e-14 80.5 70 61.4
BcaC07g38878 Brassica carinata HOM05D023231 ORTHO05D031966 2.0e-13 79.3 45 86.7
BolC8t49461H Brassica oleracea HOM05D023231 ORTHO05D031966 2.0e-13 79.3 75 61.3
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 2.0e-13 79.3 70 58.6
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.4e-13 78.6 72 54.2
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 1.1e-11 73.6 70 50.0
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 4.2e-11 71.6 70 55.7
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 1.2e-10 70.1 49 59.2
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 1.2e-10 70.1 49 59.2
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 1.6e-10 69.7 73 46.6
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 3.9e-09 65.1 55 63.6
C08p18260 Brassica napus HOM05D023231 ORTHO05D031966 1.1e-08 63.5 35 88.6
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 1.1e-08 63.5 76 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.9e-08 62.8 74 44.6
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 5.7e-08 61.2 89 39.3
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 7.4e-08 60.8 91 42.9
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 7.4e-08 60.8 80 41.2
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.3e-07 60.1 72 40.3
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 2.2e-07 59.3 89 40.4
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 8.2e-07 57.4 45 51.1
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 1.8e-06 56.2 75 40.0
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 4.1e-06 55.1 72 44.4
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 5.3e-06 54.7 70 41.4
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 5.3e-06 54.7 40 70.0


User provided reference genes

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