Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 9.0e-223 776.5 378 100.0
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 2.2e-83 313.5 222 73.9
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 8.2e-83 311.6 194 80.9
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 1.8e-82 310.5 194 80.4
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 5.3e-82 308.9 194 80.4
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 6.9e-82 308.5 193 79.8
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 9.1e-82 308.1 194 80.9
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 9.1e-82 308.1 194 79.9
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 9.1e-82 308.1 194 79.9
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 2.0e-81 307.0 194 79.4
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 1.0e-80 304.7 194 79.9
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 1.0e-80 304.7 194 78.4
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 9.4e-79 298.1 194 78.9
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 2.7e-78 296.6 194 77.3
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 1.1e-76 291.2 194 77.3
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.9e-71 273.9 193 72.0
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 8.2e-67 258.5 194 64.4
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 1.6e-65 254.2 527 34.5
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 7.2e-63 245.4 124 94.4
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 2.3e-56 223.8 197 55.3
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 1.1e-55 221.5 192 53.1
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 1.5e-55 221.1 193 55.4
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 1.5e-55 221.1 216 51.4
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.5e-55 220.3 194 55.2
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 3.2e-55 219.9 196 54.1
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 4.2e-55 219.5 216 50.5
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 2.1e-54 217.2 195 53.8
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 2.8e-54 216.9 194 54.6
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 3.6e-54 216.5 220 49.1
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 3.6e-54 216.5 220 49.1
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 3.6e-54 216.5 192 54.7
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 3.6e-54 216.5 195 55.4
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 6.1e-54 215.7 196 53.6
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 1.4e-53 214.5 194 53.1
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 2.3e-53 213.8 220 49.5
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 2.3e-53 213.8 194 52.6
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 2.3e-53 213.8 194 52.6
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 4.0e-53 213.0 194 53.6
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.0e-53 213.0 195 54.9
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 5.2e-53 212.6 193 53.9
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 8.8e-53 211.8 217 50.2
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 8.8e-53 211.8 192 52.6
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 1.2e-52 211.5 193 52.8
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 1.2e-52 211.5 195 52.3
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 1.5e-52 211.1 193 53.9
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 2.0e-52 210.7 194 55.2
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 2.6e-52 210.3 193 52.8
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 2.6e-52 210.3 193 52.8
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.6e-52 210.3 217 50.2
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 3.4e-52 209.9 217 49.8
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.4e-52 209.9 217 49.8
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.4e-52 209.5 217 50.2
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 4.4e-52 209.5 192 52.6
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 5.7e-52 209.1 196 55.1
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 9.8e-52 208.4 192 51.6
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 9.8e-52 208.4 217 49.3
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 1.3e-51 208.0 192 52.1
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 1.3e-51 208.0 195 51.3
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 1.3e-51 208.0 192 52.6
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 2.2e-51 207.2 195 50.8
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 2.8e-51 206.8 194 51.0
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 3.7e-51 206.5 195 53.3
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 3.7e-51 206.5 195 51.3
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 4.9e-51 206.1 194 51.5
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 6.3e-51 205.7 192 51.0
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 6.3e-51 205.7 193 52.3
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 8.3e-51 205.3 195 50.8
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 1.4e-50 204.5 193 50.3
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 1.4e-50 204.5 194 51.5
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 3.1e-50 203.4 208 56.2
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 3.1e-50 203.4 208 56.2
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 3.1e-50 203.4 197 51.3
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 3.1e-50 203.4 198 49.0
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 3.1e-50 203.4 192 51.0
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 4.1e-50 203.0 196 52.6
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 4.1e-50 203.0 195 50.3
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 5.4e-50 202.6 192 54.2
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 9.2e-50 201.8 192 50.0
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 2.0e-49 200.7 197 52.3
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 2.7e-49 200.3 194 50.0
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 2.7e-49 200.3 196 50.0
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 3.5e-49 199.9 195 48.7
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 3.5e-49 199.9 195 48.2
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 3.5e-49 199.9 196 53.1
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 3.5e-49 199.9 192 49.5
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 3.5e-49 199.9 218 50.5
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 4.5e-49 199.5 192 50.0
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 4.5e-49 199.5 192 49.5
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 7.8e-49 198.7 197 50.8
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 1.0e-48 198.4 195 49.2
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 1.3e-48 198.0 195 48.2
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 1.7e-48 197.6 192 50.5
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 2.3e-48 197.2 196 49.0
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 3.8e-48 196.4 197 49.2
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 8.6e-48 195.3 215 47.4
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 8.6e-48 195.3 197 49.2
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 1.1e-47 194.9 196 49.5
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 1.1e-47 194.9 195 49.7
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 1.9e-47 194.1 196 48.0
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.1e-46 190.7 195 50.3
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 4.7e-46 189.5 197 48.7
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 1.0e-45 188.3 164 54.9
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 3.7e-43 179.9 170 52.9
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.8e-42 177.6 208 43.3
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 7.0e-42 175.6 203 47.8
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 5.9e-41 172.6 203 46.8
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 1.7e-40 171.0 169 48.5
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 7.3e-39 165.6 207 42.0
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 1.3e-35 154.8 213 39.9
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 1.3e-32 144.8 212 39.2
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 2.6e-28 130.6 185 40.5
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 3.4e-28 130.2 103 67.0
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 1.4e-18 98.2 62 74.2
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 8.7e-16 89.0 99 48.5
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 2.5e-15 87.4 69 56.5
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 3.3e-15 87.0 166 37.3
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 1.2e-14 85.1 235 28.1
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.1e-14 84.3 106 40.6
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 8.1e-14 82.4 80 61.2
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.8e-13 81.3 48 81.2
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 6.9e-13 79.3 100 44.0
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 3.4e-12 77.0 90 52.2
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 5.8e-12 76.3 114 35.1
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 2.2e-11 74.3 165 34.5
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 3.8e-11 73.6 135 34.1
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 4.9e-11 73.2 212 29.7
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 8.4e-11 72.4 145 32.4
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 8.4e-11 72.4 101 38.6
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 5.1e-08 63.2 116 38.8
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 7.3e-07 59.3 197 28.9


User provided reference genes

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