Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 1.8e-73 279.3 148 100.0
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 6.2e-26 121.3 60 93.3
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 6.2e-26 121.3 60 93.3
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 1.1e-25 120.6 69 85.5
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 1.1e-25 120.6 69 85.5
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 1.1e-25 120.6 69 85.5
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 1.1e-25 120.6 60 93.3
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 1.4e-25 120.2 60 91.7
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 1.4e-25 120.2 69 84.1
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 2.3e-25 119.4 60 93.3
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 2.3e-25 119.4 69 84.1
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 2.3e-25 119.4 69 84.1
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 3.1e-25 119.0 69 82.6
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 4.0e-25 118.6 69 84.1
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 5.2e-25 118.2 69 84.1
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 6.8e-25 117.9 69 82.6
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 8.9e-25 117.5 69 82.6
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 8.9e-25 117.5 78 75.6
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 8.9e-25 117.5 60 93.3
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 1.2e-24 117.1 69 81.2
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.0e-24 116.3 71 83.1
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 2.0e-24 116.3 60 91.7
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 5.8e-24 114.8 69 81.2
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 5.8e-24 114.8 78 73.1
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 7.5e-24 114.4 60 91.7
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 1.3e-23 113.6 70 78.6
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.7e-23 113.2 60 88.3
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.7e-23 113.2 60 88.3
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 1.7e-23 113.2 60 88.3
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 1.7e-23 113.2 60 88.3
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 2.9e-23 112.5 60 86.7
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 2.9e-23 112.5 69 81.2
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 3.7e-23 112.1 69 78.3
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 3.7e-23 112.1 60 86.7
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 4.9e-23 111.7 69 78.3
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 4.9e-23 111.7 60 88.3
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 6.4e-23 111.3 69 76.8
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 6.4e-23 111.3 60 86.7
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 6.4e-23 111.3 60 86.7
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 6.4e-23 111.3 69 79.7
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 6.4e-23 111.3 69 76.8
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 6.4e-23 111.3 69 76.8
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 6.4e-23 111.3 69 81.2
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 6.4e-23 111.3 60 85.0
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 8.3e-23 110.9 60 86.7
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 8.3e-23 110.9 69 81.2
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 8.3e-23 110.9 64 81.2
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 8.3e-23 110.9 60 85.0
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 1.1e-22 110.5 69 79.7
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 1.1e-22 110.5 69 79.7
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 1.1e-22 110.5 69 78.3
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.1e-22 110.5 69 82.6
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 1.4e-22 110.2 60 85.0
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 1.4e-22 110.2 69 78.3
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 1.4e-22 110.2 60 85.0
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 1.9e-22 109.8 69 73.9
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 1.9e-22 109.8 60 86.7
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 2.4e-22 109.4 69 76.8
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 2.4e-22 109.4 69 76.8
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 3.2e-22 109.0 60 86.7
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 3.2e-22 109.0 60 86.7
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 4.1e-22 108.6 60 83.3
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 4.1e-22 108.6 69 76.8
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 4.1e-22 108.6 69 73.9
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 5.4e-22 108.2 60 83.3
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 9.2e-22 107.5 60 85.0
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 9.2e-22 107.5 69 76.8
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 9.2e-22 107.5 60 81.7
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 9.2e-22 107.5 71 70.4
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 1.2e-21 107.1 69 75.4
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.2e-21 107.1 69 76.8
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 1.6e-21 106.7 69 76.8
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 1.6e-21 106.7 60 83.3
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 2.7e-21 105.9 69 73.9
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 2.7e-21 105.9 60 80.0
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 2.7e-21 105.9 64 78.1
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 2.7e-21 105.9 60 85.0
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 3.5e-21 105.5 69 73.9
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 3.5e-21 105.5 69 73.9
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 4.6e-21 105.1 60 80.0
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 4.6e-21 105.1 69 75.4
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 4.6e-21 105.1 60 83.3
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.6e-21 105.1 60 83.3
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.6e-21 105.1 60 83.3
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.6e-21 105.1 60 83.3
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 4.6e-21 105.1 69 76.8
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 4.6e-21 105.1 70 75.7
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 6.0e-21 104.8 60 80.0
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 6.0e-21 104.8 69 73.9
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 7.8e-21 104.4 69 75.4
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 7.8e-21 104.4 69 75.4
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 1.0e-20 104.0 69 72.5
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 2.3e-20 102.8 69 78.3
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 2.3e-20 102.8 69 72.5
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 2.3e-20 102.8 60 78.3
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.0e-20 102.4 69 73.9
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 3.0e-20 102.4 69 73.9
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 3.9e-20 102.1 56 83.9
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 5.1e-20 101.7 60 80.0
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 5.1e-20 101.7 60 80.0
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 1.1e-19 100.5 66 77.3
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 1.6e-18 96.7 90 60.0
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 6.2e-18 94.7 55 78.2
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 5.2e-17 91.7 69 65.2
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 8.9e-17 90.9 56 73.2
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 9.9e-16 87.4 53 73.6
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 2.2e-15 86.3 56 69.6
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.5e-13 79.0 77 59.7
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 1.3e-12 77.0 60 63.3
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 1.1e-11 73.9 55 63.6
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.9e-11 73.2 73 53.4
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.4e-09 66.2 69 53.6
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 2.4e-09 66.2 53 54.7
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 2.9e-07 59.3 66 45.5
RcHm_v2.0_Chr7g0200991 Rosa chinensis HOM05D004962 ORTHO05D006249 2.4e-06 56.2 27 88.9
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 7.1e-06 54.7 40 67.5


User provided reference genes

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