Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 0.0e+00 1250.0 823 100.0
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 0.0e+00 1207.6 823 96.1
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 0.0e+00 1163.3 824 93.7
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 0.0e+00 1105.1 824 91.0
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 6.0e-280 967.6 822 82.1
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 3.3e-278 961.8 865 79.7
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 8.4e-266 920.6 862 74.7
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 4.2e-257 891.7 843 77.7
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 4.1e-252 875.2 860 75.9
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 7.6e-251 870.9 851 73.1
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 5.9e-235 818.1 858 75.2
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 7.6e-174 615.1 862 60.6
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 7.6e-134 482.3 896 46.4
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 2.8e-112 410.6 887 42.3
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 2.5e-108 397.5 789 44.4
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 5.5e-108 396.4 778 43.1
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 4.4e-105 386.7 768 43.6
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 5.7e-105 386.3 770 45.2
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 8.2e-104 382.5 792 42.6
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 4.5e-102 376.7 705 43.7
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.9e-101 374.0 804 41.4
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 5.0e-101 373.2 947 35.8
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 8.5e-101 372.5 811 41.7
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 1.1e-100 372.1 811 41.4
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 2.5e-100 370.9 815 41.7
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 8.0e-99 365.9 814 44.0
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 3.4e-97 360.5 943 38.1
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 9.8e-97 359.0 449 52.8
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 2.2e-96 357.8 808 38.1
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 1.8e-95 354.8 852 39.1
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 1.6e-94 351.7 812 41.0
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 5.9e-94 349.7 835 39.3
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 7.7e-94 349.4 842 38.0
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 5.0e-93 346.7 777 41.3
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 2.5e-92 344.4 782 38.0
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 4.2e-92 343.6 863 38.7
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 1.6e-91 341.7 741 40.9
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 6.1e-91 339.7 802 39.3
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 6.1e-91 339.7 700 43.9
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 8.0e-91 339.3 805 37.9
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 1.4e-90 338.6 434 48.6
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 3.0e-90 337.4 815 39.1
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 4.0e-90 337.0 782 35.5
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.2e-89 335.5 697 41.0
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.2e-89 335.5 777 43.5
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.4e-89 334.0 698 40.7
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 9.8e-89 332.4 832 40.5
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 1.3e-88 332.0 430 48.1
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 2.2e-88 331.3 471 49.5
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 2.8e-88 330.9 739 40.7
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 4.1e-87 327.0 873 38.4
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 4.1e-87 327.0 703 39.8
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 5.4e-87 326.6 698 41.5
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 2.0e-86 324.7 432 46.3
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 3.5e-86 323.9 888 38.0
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 5.9e-86 323.2 670 39.9
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 2.3e-85 321.2 670 39.9
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 2.3e-85 321.2 442 51.4
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 1.1e-84 318.9 735 39.9
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.1e-84 318.9 704 42.5
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 1.5e-84 318.5 644 40.5
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.9e-84 318.2 781 37.0
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 2.5e-84 317.8 557 43.4
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 2.5e-84 317.8 726 38.6
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 2.5e-84 317.8 760 42.0
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 1.6e-83 315.1 360 55.6
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 1.6e-83 315.1 455 45.9
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 3.0e-82 310.8 802 40.1
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 3.0e-82 310.8 375 53.1
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 2.2e-80 304.7 431 47.6
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 3.7e-80 303.9 434 48.6
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 3.7e-80 303.9 368 50.8
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 4.9e-80 303.5 438 48.4
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 8.3e-80 302.8 442 45.2
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 1.4e-79 302.0 659 38.2
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 1.8e-79 301.6 374 53.5
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 2.3e-77 294.7 910 33.7
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 2.3e-77 294.7 443 43.8
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 1.9e-76 291.6 647 37.1
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 5.6e-76 290.0 697 35.7
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.0e-74 285.8 698 35.5
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 9.8e-73 279.3 712 38.9
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 2.9e-72 277.7 355 48.7
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 3.2e-71 274.2 795 37.7
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 2.0e-70 271.6 356 47.2
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.3e-69 268.9 362 47.5
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.9e-68 265.0 430 42.3
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 6.2e-67 260.0 360 46.1
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 1.1e-66 259.2 728 33.7
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 1.4e-66 258.8 556 40.5
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 4.0e-66 257.3 382 47.9
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 5.2e-66 256.9 370 47.0
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 1.4e-63 248.8 667 39.6
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 4.1e-63 247.3 360 46.9
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 8.6e-61 239.6 730 36.7
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.0e-53 216.1 304 45.1
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.0e-53 216.1 304 45.1
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 9.3e-47 193.0 336 43.8
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 1.8e-34 152.1 370 37.3
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 6.4e-32 143.7 544 39.0
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.9e-31 142.1 303 39.3
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 4.2e-31 141.0 313 36.7
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 8.4e-24 116.7 125 54.4
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 1.9e-23 115.5 133 49.6
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.7e-22 111.7 509 33.4
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 6.3e-19 100.5 177 40.7
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 1.5e-17 95.9 145 44.8
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 2.0e-17 95.5 193 39.9
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 6.9e-10 70.5 113 41.6
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 2.0e-09 68.9 47 74.5
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 1.3e-08 66.2 117 38.5
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 2.1e-06 58.9 140 38.6


User provided reference genes

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