Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p03110 Brassica napus HOM05D004372 ORTHO05D004331 3.5e-51 204.5 94 100.0
BolC8t47109H Brassica oleracea HOM05D004372 ORTHO05D004331 3.5e-51 204.5 94 100.0
Sp1g06230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 2.4e-36 155.2 94 77.7
A08p35620 Brassica napus HOM05D004372 ORTHO05D004331 3.5e-35 151.4 94 78.7
BraA08t35468Z Brassica rapa HOM05D004372 ORTHO05D004331 3.5e-35 151.4 94 78.7
BcaB02g06736 Brassica carinata HOM05D004372 ORTHO05D004331 1.0e-34 149.8 94 76.6
BcaB03g13391 Brassica carinata HOM05D004372 ORTHO05D004331 1.1e-33 146.4 93 75.3
AL1G17680 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 5.8e-30 134.0 88 76.1
A10p06030 Brassica napus HOM05D004372 ORTHO05D004331 7.6e-30 133.7 94 69.1
BraA10t42865Z Brassica rapa HOM05D004372 ORTHO05D004331 7.6e-30 133.7 94 69.1
BcaC05g24693 Brassica carinata HOM05D004372 ORTHO05D004331 2.9e-29 131.7 94 68.1
C05p05520 Brassica napus HOM05D004372 ORTHO05D004331 2.9e-29 131.7 94 69.1
BolC5t29323H Brassica oleracea HOM05D004372 ORTHO05D004331 2.9e-29 131.7 94 69.1
Carub.0001s0682 Capsella rubella HOM05D004372 ORTHO05D004331 7.4e-25 117.1 73 74.0
THA.LOC109117261 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 1.9e-17 92.4 92 51.1
Aa31LG1G6940 Aethionema arabicum HOM05D004372 ORTHO05D004331 9.7e-17 90.1 83 59.0
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 2.1e-11 72.4 61 57.4
COL.COLO4_18555 Corchorus olitorius HOM05D004372 ORTHO05D004331 3.0e-10 68.6 97 43.3
Thecc.09G318100 Theobroma cacao HOM05D004372 ORTHO05D004331 6.7e-10 67.4 56 57.1
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 2.5e-09 65.5 72 52.8
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 2.5e-09 65.5 72 52.8
Ciclev10029728m.g Citrus clementina HOM05D004372 ORTHO05D004331 3.3e-09 65.1 66 50.0
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 4.3e-09 64.7 72 47.2
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 4.3e-09 64.7 72 48.6
AT1G07500 Arabidopsis thaliana HOM05D004372 ORTHO05D004331 5.7e-09 64.3 35 74.3
Eucgr.J01238 Eucalyptus grandis HOM05D004372 ORTHO05D004331 7.4e-09 63.9 71 43.7
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 1.3e-08 63.2 76 47.4
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 2.2e-08 62.4 88 42.0
Manes.07G117700 Manihot esculenta HOM05D004372 ORTHO05D004331 3.7e-08 61.6 74 45.9
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 4.8e-08 61.2 66 45.5
CDE02G0964 Ceratophyllum demersum HOM05D000511 ORTHO05D000413 8.2e-08 60.5 82 41.5
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 8.2e-08 60.5 68 52.9
CsaV3_3G034820 Cucumis sativus L. HOM05D004372 ORTHO05D004331 1.1e-07 60.1 76 47.4
QL01p030934 Quercus lobata HOM05D004372 ORTHO05D004331 1.8e-07 59.3 67 49.3
Gorai.009G097700 Gossypium raimondii HOM05D004372 ORTHO05D004331 2.4e-07 58.9 68 50.0
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 4.1e-07 58.2 82 40.2
Sed0010480 Sechium edule HOM05D004372 ORTHO05D004331 6.9e-07 57.4 78 43.6
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 6.9e-07 57.4 82 40.2
Atru.chr3.3970 Acer truncatum HOM05D004372 ORTHO05D004331 1.5e-06 56.2 72 41.7
Phvul.008G231900 Phaseolus vulgaris HOM05D004372 ORTHO05D004331 1.5e-06 56.2 63 46.0
Rhsim04G0158600 Rhododendron simsii HOM05D004372 ORTHO05D004331 2.0e-06 55.8 85 40.0
Lsat_1_v5_gn_5_169301 Lactuca sativa HOM05D004372 ORTHO05D004331 3.4e-06 55.1 76 43.4
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 4.5e-06 54.7 58 51.7
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 4.5e-06 54.7 58 50.0
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 5.9e-06 54.3 58 50.0
Medtr5g080040 Medicago truncatula HOM05D004372 ORTHO05D004331 5.9e-06 54.3 71 36.6
TAR623G0224 Trochodendron aralioides HOM05D004372 ORTHO05D004331 5.9e-06 54.3 55 49.1
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 7.7e-06 53.9 86 40.7
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 7.7e-06 53.9 58 50.0
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 7.7e-06 53.9 58 50.0
MD12G1144200 Malus domestica HOM05D004372 ORTHO05D004331 7.7e-06 53.9 69 46.4
Manes.02G130300 Manihot esculenta HOM05D004372 ORTHO05D004331 7.7e-06 53.9 85 43.5


User provided reference genes

Program Settings